Cp4.1LG19g03850 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG19g03850
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Transcription factor, TCP
Location	Cp4.1LG19: 3820926 .. 3821555 (-)
RNA-Seq Expression	Cp4.1LG19g03850
Synteny	Cp4.1LG19g03850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATCCGAAATCCTTCCCCACAAATTTCCCTCTTCCTCCGATCCCCATTCTCAGCCCACCGCTTCTCACTCACTTGCAGTCGCCACTGATTCATCTCTGCCCAACACCACGCAACCCGTCGTCCATCGCAAATCCTCCACCGCTTTGTCCTCGTCATCTTCGAGGGACCGCCACACCAAGGTCAACGGCAGAGGGCGCCGTGTCCGCATGCCGGCTCTCTGTGCCTCTCGCATCTTTCAGTTGACGTGCGAGCTTGGCCATCGTTCTGATGGTGAGACCATCGAGTGGCTTCTCCGTCAGGCTGAGCCCTCTATCATCGCAGCCACTGGTACTGGGACTGTTCCGGCTGCTCCGATCTCCACCGTTTCTTCGGTTATGGCGTCGTCTGCTCCGTCGGTTGCTTGTAGGGTTCAGCCGGTGGCAGTGGCTGCTGCTGGTGGGCAGGGAATGTTCGGGATGCCACCGCCGAGCTGCCGTTTGAATTTATGCCAGCCGGCCGGGATGGATTACTCTAATGGCGGGGATGATTACCGGTACATGCCGTTCACTGCGCTTCTGTTGCAGCCGGCGACGGCGGACGAGGCGGAGGAGAGACATGAGGCGGAGGAGATCTTCAGAGAACAATAG

mRNA sequence

ATGGTATCCGAAATCCTTCCCCACAAATTTCCCTCTTCCTCCGATCCCCATTCTCAGCCCACCGCTTCTCACTCACTTGCAGTCGCCACTGATTCATCTCTGCCCAACACCACGCAACCCGTCGTCCATCGCAAATCCTCCACCGCTTTGTCCTCGTCATCTTCGAGGGACCGCCACACCAAGGTCAACGGCAGAGGGCGCCGTGTCCGCATGCCGGCTCTCTGTGCCTCTCGCATCTTTCAGTTGACGTGCGAGCTTGGCCATCGTTCTGATGGTGAGACCATCGAGTGGCTTCTCCGTCAGGCTGAGCCCTCTATCATCGCAGCCACTGGTACTGGGACTGTTCCGGCTGCTCCGATCTCCACCGTTTCTTCGGTTATGGCGTCGTCTGCTCCGTCGGTTGCTTGTAGGGTTCAGCCGGTGGCAGTGGCTGCTGCTGGTGGGCAGGGAATGTTCGGGATGCCACCGCCGAGCTGCCGTTTGAATTTATGCCAGCCGGCCGGGATGGATTACTCTAATGGCGGGGATGATTACCGGTACATGCCGTTCACTGCGCTTCTGTTGCAGCCGGCGACGGCGGACGAGGCGGAGGAGAGACATGAGGCGGAGGAGATCTTCAGAGAACAATAG

Coding sequence (CDS)

ATGGTATCCGAAATCCTTCCCCACAAATTTCCCTCTTCCTCCGATCCCCATTCTCAGCCCACCGCTTCTCACTCACTTGCAGTCGCCACTGATTCATCTCTGCCCAACACCACGCAACCCGTCGTCCATCGCAAATCCTCCACCGCTTTGTCCTCGTCATCTTCGAGGGACCGCCACACCAAGGTCAACGGCAGAGGGCGCCGTGTCCGCATGCCGGCTCTCTGTGCCTCTCGCATCTTTCAGTTGACGTGCGAGCTTGGCCATCGTTCTGATGGTGAGACCATCGAGTGGCTTCTCCGTCAGGCTGAGCCCTCTATCATCGCAGCCACTGGTACTGGGACTGTTCCGGCTGCTCCGATCTCCACCGTTTCTTCGGTTATGGCGTCGTCTGCTCCGTCGGTTGCTTGTAGGGTTCAGCCGGTGGCAGTGGCTGCTGCTGGTGGGCAGGGAATGTTCGGGATGCCACCGCCGAGCTGCCGTTTGAATTTATGCCAGCCGGCCGGGATGGATTACTCTAATGGCGGGGATGATTACCGGTACATGCCGTTCACTGCGCTTCTGTTGCAGCCGGCGACGGCGGACGAGGCGGAGGAGAGACATGAGGCGGAGGAGATCTTCAGAGAACAATAG

Protein sequence

MVSEILPHKFPSSSDPHSQPTASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRHTKVNGRGRRVRMPALCASRIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPISTVSSVMASSAPSVACRVQPVAVAAAGGQGMFGMPPPSCRLNLCQPAGMDYSNGGDDYRYMPFTALLLQPATADEAEERHEAEEIFREQ

Homology

[Close]

BLAST of Cp4.1LG19g03850 vs. ExPASy Swiss-Prot
Match: Q9SJK7 (Transcription factor TCP11 OS=Arabidopsis thaliana OX=3702 GN=TCP11 PE=1 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-29
Identity = 89/180 (49.44%), Postives = 109/180 (60.56%), Query Frame = 0


Query: 27  AVATDSSLPNTTQPVVHRKSST--ALSSSSSRDRHTKVNGRGRRVRMPALCASRIFQLTC 86
           A+A++S   + TQ  V + SS+     S+ ++DRHTKVNGR RRV MPAL A+RIFQLT 
Sbjct: 15  AIASESR--SQTQFGVSKSSSSGGGCISARTKDRHTKVNGRSRRVTMPALAAARIFQLTR 74

Query: 87  ELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPISTVSSVMASSAPSVACRVQPVAVA 146
           ELGH+++GETIEWLL QAEPSIIAATG GT     IS    V A  + S +    P    
Sbjct: 75  ELGHKTEGETIEWLLSQAEPSIIAATGYGT---KLISNWVDVAADDSSSSSSMTSPQTQT 134

Query: 147 AAGGQGMFGMPPPSCRLNLCQPAGMDYSNGGDDYRYMPFTALLLQPATADEAEERHEAEE 205
                       PSCRL+LCQP G+ Y   G  Y +MPFTA+LL+P T     E   AEE
Sbjct: 135 QT-------PQSPSCRLDLCQPIGIQYPVNG--YSHMPFTAMLLEPMTTTAESEVEIAEE 180

[Close]

BLAST of Cp4.1LG19g03850 vs. ExPASy Swiss-Prot
Match: Q9C518 (Transcription factor TCP8 OS=Arabidopsis thaliana OX=3702 GN=TCP8 PE=1 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 7.0e-25
Identity = 67/119 (56.30%), Postives = 91/119 (76.47%), Query Frame = 0


Query: 23  SHSLAVATDSSLPNTTQP---VVHRKSSTALSSS---SSRDRHTKVNGRGRRVRMPALCA 82
           +  L  A+ S +P +T P    +   SSTA +++   S++DRHTKV+GRGRR+RMPALCA
Sbjct: 22  ARQLVDASLSIVPRSTPPEDSTLATTSSTATATTTKRSTKDRHTKVDGRGRRIRMPALCA 81

Query: 83  SRIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPISTVSSVMASSAPSVA 136
           +R+FQLT ELGH+SDGETIEWLL+QAEP+I+AATGTGT+P A  ST+S  + SS  +++
Sbjct: 82  ARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIP-ANFSTLSVSLRSSGSTLS 139

[Close]

BLAST of Cp4.1LG19g03850 vs. ExPASy Swiss-Prot
Match: Q93Z00 (Transcription factor TCP14 OS=Arabidopsis thaliana OX=3702 GN=TCP14 PE=1 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.2e-24
Identity = 71/130 (54.62%), Postives = 85/130 (65.38%), Query Frame = 0


Query: 8   HKFPSSSDPHSQPTASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRHTKVNGRGR 67
           H+  S S P SQ   S       +         VV  K    L  +S++DRHTKV+GRGR
Sbjct: 71  HQQLSQSQPQSQSQKSQPQTTQKELLQTQEESAVVAAK-KPPLKRASTKDRHTKVDGRGR 130

Query: 68  RVRMPALCASRIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPA----APISTV 127
           R+RMPALCA+R+FQLT ELGH+SDGETIEWLL+QAEPS+IAATGTGT+PA      IS  
Sbjct: 131 RIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTSLNISLR 190

Query: 128 SSVMASSAPS 134
           SS  + S PS
Sbjct: 191 SSGSSMSLPS 199

[Close]

BLAST of Cp4.1LG19g03850 vs. ExPASy Swiss-Prot
Match: Q9LSD5 (Transcription factor TCP20 OS=Arabidopsis thaliana OX=3702 GN=TCP20 PE=1 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.5e-24
Identity = 61/112 (54.46%), Postives = 80/112 (71.43%), Query Frame = 0


Query: 14  SDPHSQPTA---SHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRHTKVNGRGRRVR 73
           SD + +PT       + V+     PN        ++      SS++DRHTKV GRGRR+R
Sbjct: 37  SDENRKPTTEIKDFQIVVSASDKEPNKKS---QNQNQLGPKRSSNKDRHTKVEGRGRRIR 96

Query: 74  MPALCASRIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPIST 123
           MPALCA+RIFQLT ELGH+SDGETI+WLL+QAEPSIIAATG+GT+PA+ +++
Sbjct: 97  MPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALAS 145

[Close]

BLAST of Cp4.1LG19g03850 vs. ExPASy Swiss-Prot
Match: Q53PH2 (Transcription factor PCF3 OS=Oryza sativa subsp. japonica OX=39947 GN=PCF3 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.9e-24
Identity = 55/86 (63.95%), Postives = 72/86 (83.72%), Query Frame = 0


Query: 55  SRDRHTKVNGRGRRVRMPALCASRIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGT 114
           ++DRHTKV GRGRR+RMPALCA+R+FQLT ELGH++DGETIEWLL+QAEP+I+AATGTGT
Sbjct: 152 TKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGT 211

Query: 115 VPAAPISTVSSVMASSAPSVACRVQP 141
           +PA   S   S+ ++++ S + R  P
Sbjct: 212 IPANFSSLAVSLRSAASHSSSPRAAP 237

[Close]

BLAST of Cp4.1LG19g03850 vs. NCBI nr
Match: XP_023518605.1 (transcription factor TCP11-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 401 bits (1030), Expect = 1.28e-140
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0


Query: 1   MVSEILPHKFPSSSDPHSQPTASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRHT 60
           MVSEILPHKFPSSSDPHSQPTASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRHT
Sbjct: 1   MVSEILPHKFPSSSDPHSQPTASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRHT 60

Query: 61  KVNGRGRRVRMPALCASRIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPI 120
           KVNGRGRRVRMPALCASRIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPI
Sbjct: 61  KVNGRGRRVRMPALCASRIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPI 120

Query: 121 STVSSVMASSAPSVACRVQPVAVAAAGGQGMFGMPPPSCRLNLCQPAGMDYSNGGDDYRY 180
           STVSSVMASSAPSVACRVQPVAVAAAGGQGMFGMPPPSCRLNLCQPAGMDYSNGGDDYRY
Sbjct: 121 STVSSVMASSAPSVACRVQPVAVAAAGGQGMFGMPPPSCRLNLCQPAGMDYSNGGDDYRY 180

Query: 181 MPFTALLLQPATADEAEERHEAEEIFREQ 209
           MPFTALLLQPATADEAEERHEAEEIFREQ
Sbjct: 181 MPFTALLLQPATADEAEERHEAEEIFREQ 209

[Close]

BLAST of Cp4.1LG19g03850 vs. NCBI nr
Match: XP_022972643.1 (transcription factor TCP11-like [Cucurbita maxima])

HSP 1 Score: 389 bits (998), Expect = 9.65e-136
Identity = 203/209 (97.13%), Postives = 204/209 (97.61%), Query Frame = 0


Query: 1   MVSEILPHKFPSSSDPHSQPTASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRHT 60
           MVSEILPHKFPSSSDPHSQPTASHSLAV TDSSLPNTTQPVVHRKSSTALSSSSSRDRHT
Sbjct: 1   MVSEILPHKFPSSSDPHSQPTASHSLAVDTDSSLPNTTQPVVHRKSSTALSSSSSRDRHT 60

Query: 61  KVNGRGRRVRMPALCASRIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPI 120
           KVNGRGRRVRMPALCA+RIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPI
Sbjct: 61  KVNGRGRRVRMPALCAARIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPI 120

Query: 121 STVSSVMASSAPSVACRVQPVAVAAAGGQGMFGMPPPSCRLNLCQPAGMDYSNGGDDYRY 180
           STVS VMASSAPSVACRVQPVAVAAA GQGMFGMPPPSCRLNLCQP GMDYS GGDDYRY
Sbjct: 121 STVSPVMASSAPSVACRVQPVAVAAASGQGMFGMPPPSCRLNLCQPVGMDYSAGGDDYRY 180

Query: 181 MPFTALLLQPATADEAEERHEAEEIFREQ 209
           MPFTALLLQPATADEAEERHEAEEIFREQ
Sbjct: 181 MPFTALLLQPATADEAEERHEAEEIFREQ 209

[Close]

BLAST of Cp4.1LG19g03850 vs. NCBI nr
Match: KAG6595232.1 (Transcription factor TCP11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 384 bits (985), Expect = 9.59e-134
Identity = 203/210 (96.67%), Postives = 205/210 (97.62%), Query Frame = 0


Query: 1   MVSEILPHKFPSSSDPHSQPTASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRHT 60
           MVSEILPH FPSSSDPHSQPTASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRHT
Sbjct: 1   MVSEILPHIFPSSSDPHSQPTASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRHT 60

Query: 61  KVNGRGRRVRMPALCASRIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPI 120
           KVNGRGRRVRMPALCA+RIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPI
Sbjct: 61  KVNGRGRRVRMPALCAARIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPI 120

Query: 121 STVSSVMASSAPSVACRVQPVAVAAA-GGQGMFGMPPPSCRLNLCQPAGMDYSNGGDDYR 180
           STVS VMASSAPSVACRVQPVAVAAA GGQGMFGMPPPSCRLNLCQP GM+YS GGDDYR
Sbjct: 121 STVSPVMASSAPSVACRVQPVAVAAAAGGQGMFGMPPPSCRLNLCQPVGMNYSAGGDDYR 180

Query: 181 YMPFTALLLQPATADEAEERHEAEEIFREQ 209
           YMPFTALLLQPATADEAEERHEAEEIFREQ
Sbjct: 181 YMPFTALLLQPATADEAEERHEAEEIFREQ 210

[Close]

BLAST of Cp4.1LG19g03850 vs. NCBI nr
Match: KAG7027254.1 (Transcription factor TCP11, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 383 bits (983), Expect = 1.93e-133
Identity = 202/210 (96.19%), Postives = 204/210 (97.14%), Query Frame = 0


Query: 1   MVSEILPHKFPSSSDPHSQPTASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRHT 60
           MVSEILPHKFPSSSDPH QPTASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRHT
Sbjct: 1   MVSEILPHKFPSSSDPHPQPTASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRHT 60

Query: 61  KVNGRGRRVRMPALCASRIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPI 120
           KVNGRGRRVRMPALCA+RIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPI
Sbjct: 61  KVNGRGRRVRMPALCAARIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPI 120

Query: 121 STVSSVMASSAPSVACRVQPVAVAAA-GGQGMFGMPPPSCRLNLCQPAGMDYSNGGDDYR 180
           STVS VMASSAPSVACRVQPVAVAAA GG GMFGMPPPSCRLNLCQP GM+YS GGDDYR
Sbjct: 121 STVSPVMASSAPSVACRVQPVAVAAAAGGHGMFGMPPPSCRLNLCQPVGMNYSAGGDDYR 180

Query: 181 YMPFTALLLQPATADEAEERHEAEEIFREQ 209
           YMPFTALLLQPATADEAEERHEAEEIFREQ
Sbjct: 181 YMPFTALLLQPATADEAEERHEAEEIFREQ 210

[Close]

BLAST of Cp4.1LG19g03850 vs. NCBI nr
Match: XP_022962907.1 (transcription factor TCP11-like [Cucurbita moschata])

HSP 1 Score: 378 bits (971), Expect = 1.31e-131
Identity = 200/210 (95.24%), Postives = 203/210 (96.67%), Query Frame = 0


Query: 1   MVSEILPHKFPSSSDPHSQPTASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRHT 60
           MVSEILPHKFPSSSDPH Q TASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRHT
Sbjct: 1   MVSEILPHKFPSSSDPHPQTTASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRHT 60

Query: 61  KVNGRGRRVRMPALCASRIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPI 120
           KVNGRGRRVRMPALCA+RIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGT+PAAPI
Sbjct: 61  KVNGRGRRVRMPALCAARIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTIPAAPI 120

Query: 121 STVSSVMASSAPSVACRVQPVAVAAA-GGQGMFGMPPPSCRLNLCQPAGMDYSNGGDDYR 180
           STVS VMASSAPSVACRVQPVAVAAA GGQ MFGMPPPSCRLNLCQP GM+YS GGDDYR
Sbjct: 121 STVSPVMASSAPSVACRVQPVAVAAAAGGQRMFGMPPPSCRLNLCQPVGMNYSAGGDDYR 180

Query: 181 YMPFTALLLQPATADEAEERHEAEEIFREQ 209
           YMPFTALLLQPATADEAEERHEAEEIFREQ
Sbjct: 181 YMPFTALLLQPATADEAEERHEAEEIFREQ 210

[Close]

BLAST of Cp4.1LG19g03850 vs. ExPASy TrEMBL
Match: A0A6J1IAL2 (transcription factor TCP11-like OS=Cucurbita maxima OX=3661 GN=LOC111471177 PE=4 SV=1)

HSP 1 Score: 389 bits (998), Expect = 4.67e-136
Identity = 203/209 (97.13%), Postives = 204/209 (97.61%), Query Frame = 0


Query: 1   MVSEILPHKFPSSSDPHSQPTASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRHT 60
           MVSEILPHKFPSSSDPHSQPTASHSLAV TDSSLPNTTQPVVHRKSSTALSSSSSRDRHT
Sbjct: 1   MVSEILPHKFPSSSDPHSQPTASHSLAVDTDSSLPNTTQPVVHRKSSTALSSSSSRDRHT 60

Query: 61  KVNGRGRRVRMPALCASRIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPI 120
           KVNGRGRRVRMPALCA+RIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPI
Sbjct: 61  KVNGRGRRVRMPALCAARIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPI 120

Query: 121 STVSSVMASSAPSVACRVQPVAVAAAGGQGMFGMPPPSCRLNLCQPAGMDYSNGGDDYRY 180
           STVS VMASSAPSVACRVQPVAVAAA GQGMFGMPPPSCRLNLCQP GMDYS GGDDYRY
Sbjct: 121 STVSPVMASSAPSVACRVQPVAVAAASGQGMFGMPPPSCRLNLCQPVGMDYSAGGDDYRY 180

Query: 181 MPFTALLLQPATADEAEERHEAEEIFREQ 209
           MPFTALLLQPATADEAEERHEAEEIFREQ
Sbjct: 181 MPFTALLLQPATADEAEERHEAEEIFREQ 209

[Close]

BLAST of Cp4.1LG19g03850 vs. ExPASy TrEMBL
Match: A0A6J1HDU7 (transcription factor TCP11-like OS=Cucurbita moschata OX=3662 GN=LOC111463270 PE=4 SV=1)

HSP 1 Score: 378 bits (971), Expect = 6.32e-132
Identity = 200/210 (95.24%), Postives = 203/210 (96.67%), Query Frame = 0


Query: 1   MVSEILPHKFPSSSDPHSQPTASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRHT 60
           MVSEILPHKFPSSSDPH Q TASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRHT
Sbjct: 1   MVSEILPHKFPSSSDPHPQTTASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRHT 60

Query: 61  KVNGRGRRVRMPALCASRIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPI 120
           KVNGRGRRVRMPALCA+RIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGT+PAAPI
Sbjct: 61  KVNGRGRRVRMPALCAARIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTIPAAPI 120

Query: 121 STVSSVMASSAPSVACRVQPVAVAAA-GGQGMFGMPPPSCRLNLCQPAGMDYSNGGDDYR 180
           STVS VMASSAPSVACRVQPVAVAAA GGQ MFGMPPPSCRLNLCQP GM+YS GGDDYR
Sbjct: 121 STVSPVMASSAPSVACRVQPVAVAAAAGGQRMFGMPPPSCRLNLCQPVGMNYSAGGDDYR 180

Query: 181 YMPFTALLLQPATADEAEERHEAEEIFREQ 209
           YMPFTALLLQPATADEAEERHEAEEIFREQ
Sbjct: 181 YMPFTALLLQPATADEAEERHEAEEIFREQ 210

[Close]

BLAST of Cp4.1LG19g03850 vs. ExPASy TrEMBL
Match: A0A6J1EK07 (transcription factor TCP11-like OS=Cucurbita moschata OX=3662 GN=LOC111433306 PE=4 SV=1)

HSP 1 Score: 285 bits (728), Expect = 6.07e-95
Identity = 163/210 (77.62%), Postives = 178/210 (84.76%), Query Frame = 0


Query: 1   MVSEILPHKFPSSSDPHSQPTASHSLAVATDSSLPNTTQP-VVHRKSSTALSSSSS-RDR 60
           M SEI  HKFPSSSD HSQPTA+    V +++S  N TQ  VV RKS+ +LSSSSS RDR
Sbjct: 1   MGSEIALHKFPSSSDHHSQPTAASHSVVRSNASPTNVTQQSVVPRKSTASLSSSSSSRDR 60

Query: 61  HTKVNGRGRRVRMPALCASRIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAA 120
           HTKVNGRGRRVRMPALCA+RIFQLT ELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAA
Sbjct: 61  HTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAA 120

Query: 121 PISTVSSVMASSAPSVACRVQPVAVAAAGGQGMFGMPPPSCRLNLCQPAGMDYSNGGDDY 180
           PIST+S  MASSA SV+CRVQ V VAA   QGMF MPPPSCRL+LCQP G+DYS  G+DY
Sbjct: 121 PISTISPAMASSALSVSCRVQSVGVAA-DEQGMFAMPPPSCRLDLCQPVGLDYSAAGNDY 180

Query: 181 RYMPFTALLLQPATADEAEERHEAEEIFRE 208
           R+MPFTALLLQP+TADEAEER E EE+FRE
Sbjct: 181 RHMPFTALLLQPSTADEAEERQE-EEVFRE 208

[Close]

BLAST of Cp4.1LG19g03850 vs. ExPASy TrEMBL
Match: A0A0A0KH86 (TCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G446400 PE=4 SV=1)

HSP 1 Score: 284 bits (726), Expect = 2.18e-94
Identity = 154/207 (74.40%), Postives = 174/207 (84.06%), Query Frame = 0


Query: 1   MVSEILPHKFPSSSDPHSQP-TASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRH 60
           M S+I+ HKFPSSSDPHSQP TASHS+  +  S +  T Q ++ RKS+T LSSSSS+DRH
Sbjct: 1   MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRH 60

Query: 61  TKVNGRGRRVRMPALCASRIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAP 120
            KVNGRGRRVRMPALCA+RIFQLT ELGHRS+GETIEWLLRQAEPSIIAATGTGTVP+ P
Sbjct: 61  IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 120

Query: 121 ISTVSSVMASSAPSVACRVQPVAVAAAGGQGMFGMPPPSCRLNLCQPAGMDYSNGGDDYR 180
           ISTVSS MASS  SV+CRVQPV V  +G QGMF MPPPSCRL+LCQP GM+YS  G+DYR
Sbjct: 121 ISTVSSAMASSGRSVSCRVQPVTVGGSG-QGMFAMPPPSCRLDLCQPVGMEYSAAGNDYR 180

Query: 181 YMPFTALLLQPATADEAEERHEAEEIF 206
           +MPFTALLLQP+TA+E EER E E  F
Sbjct: 181 HMPFTALLLQPSTAEETEERQEEELFF 206

[Close]

BLAST of Cp4.1LG19g03850 vs. ExPASy TrEMBL
Match: A0A5D3C791 (Transcription factor TCP11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00190 PE=4 SV=1)

HSP 1 Score: 280 bits (717), Expect = 2.77e-93
Identity = 152/209 (72.73%), Postives = 176/209 (84.21%), Query Frame = 0


Query: 1   MVSEILPHKFPSSSDPHSQP-TASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRH 60
           M S+I+ H FPSSSDPHSQP TASHS+  +  S    + Q ++ RKS+T+LSSSSS+DRH
Sbjct: 1   MGSDIVLHNFPSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRH 60

Query: 61  TKVNGRGRRVRMPALCASRIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAP 120
            KVNGRGRRVRMPALCA+RIFQLT ELGHRS+GETIEWLLRQAEPSIIAATGTGTVP+ P
Sbjct: 61  IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 120

Query: 121 ISTVSSVMASSAPSVACRVQPVAVAAAGGQGMFGMPPPSCRLNLCQPAGMDYSNGGDDYR 180
           ISTVSS MASS  SV+CR+QPV V  +G QGMF +PPPSCRL+LCQP GM+YS  G+DYR
Sbjct: 121 ISTVSSAMASSGRSVSCRIQPVTVGGSG-QGMFSLPPPSCRLDLCQPVGMEYSAAGNDYR 180

Query: 181 YMPFTALLLQPATADEAEERHEAEEIFRE 208
           +MPFTALLLQP+T +E EER E EE+FRE
Sbjct: 181 HMPFTALLLQPSTGEETEERQE-EEVFRE 207

[Close]

BLAST of Cp4.1LG19g03850 vs. TAIR 10
Match: AT2G37000.1 (TCP family transcription factor )

HSP 1 Score: 131.3 bits (329), Expect = 8.8e-31
Identity = 89/180 (49.44%), Postives = 109/180 (60.56%), Query Frame = 0


Query: 27  AVATDSSLPNTTQPVVHRKSST--ALSSSSSRDRHTKVNGRGRRVRMPALCASRIFQLTC 86
           A+A++S   + TQ  V + SS+     S+ ++DRHTKVNGR RRV MPAL A+RIFQLT 
Sbjct: 15  AIASESR--SQTQFGVSKSSSSGGGCISARTKDRHTKVNGRSRRVTMPALAAARIFQLTR 74

Query: 87  ELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPISTVSSVMASSAPSVACRVQPVAVA 146
           ELGH+++GETIEWLL QAEPSIIAATG GT     IS    V A  + S +    P    
Sbjct: 75  ELGHKTEGETIEWLLSQAEPSIIAATGYGT---KLISNWVDVAADDSSSSSSMTSPQTQT 134

Query: 147 AAGGQGMFGMPPPSCRLNLCQPAGMDYSNGGDDYRYMPFTALLLQPATADEAEERHEAEE 205
                       PSCRL+LCQP G+ Y   G  Y +MPFTA+LL+P T     E   AEE
Sbjct: 135 QT-------PQSPSCRLDLCQPIGIQYPVNG--YSHMPFTAMLLEPMTTTAESEVEIAEE 180

[Close]

BLAST of Cp4.1LG19g03850 vs. TAIR 10
Match: AT1G58100.1 (TCP family transcription factor )

HSP 1 Score: 115.5 bits (288), Expect = 5.0e-26
Identity = 67/119 (56.30%), Postives = 91/119 (76.47%), Query Frame = 0


Query: 23  SHSLAVATDSSLPNTTQP---VVHRKSSTALSSS---SSRDRHTKVNGRGRRVRMPALCA 82
           +  L  A+ S +P +T P    +   SSTA +++   S++DRHTKV+GRGRR+RMPALCA
Sbjct: 22  ARQLVDASLSIVPRSTPPEDSTLATTSSTATATTTKRSTKDRHTKVDGRGRRIRMPALCA 81

Query: 83  SRIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPISTVSSVMASSAPSVA 136
           +R+FQLT ELGH+SDGETIEWLL+QAEP+I+AATGTGT+P A  ST+S  + SS  +++
Sbjct: 82  ARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIP-ANFSTLSVSLRSSGSTLS 139

[Close]

BLAST of Cp4.1LG19g03850 vs. TAIR 10
Match: AT3G47620.1 (TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 )

HSP 1 Score: 114.8 bits (286), Expect = 8.5e-26
Identity = 71/130 (54.62%), Postives = 85/130 (65.38%), Query Frame = 0


Query: 8   HKFPSSSDPHSQPTASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRHTKVNGRGR 67
           H+  S S P SQ   S       +         VV  K    L  +S++DRHTKV+GRGR
Sbjct: 71  HQQLSQSQPQSQSQKSQPQTTQKELLQTQEESAVVAAK-KPPLKRASTKDRHTKVDGRGR 130

Query: 68  RVRMPALCASRIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPA----APISTV 127
           R+RMPALCA+R+FQLT ELGH+SDGETIEWLL+QAEPS+IAATGTGT+PA      IS  
Sbjct: 131 RIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTSLNISLR 190

Query: 128 SSVMASSAPS 134
           SS  + S PS
Sbjct: 191 SSGSSMSLPS 199

[Close]

BLAST of Cp4.1LG19g03850 vs. TAIR 10
Match: AT3G27010.1 (TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 )

HSP 1 Score: 113.2 bits (282), Expect = 2.5e-25
Identity = 61/112 (54.46%), Postives = 80/112 (71.43%), Query Frame = 0


Query: 14  SDPHSQPTA---SHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRHTKVNGRGRRVR 73
           SD + +PT       + V+     PN        ++      SS++DRHTKV GRGRR+R
Sbjct: 37  SDENRKPTTEIKDFQIVVSASDKEPNKKS---QNQNQLGPKRSSNKDRHTKVEGRGRRIR 96

Query: 74  MPALCASRIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPIST 123
           MPALCA+RIFQLT ELGH+SDGETI+WLL+QAEPSIIAATG+GT+PA+ +++
Sbjct: 97  MPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALAS 145

[Close]

BLAST of Cp4.1LG19g03850 vs. TAIR 10
Match: AT5G08330.1 (TCP family transcription factor )

HSP 1 Score: 112.5 bits (280), Expect = 4.2e-25
Identity = 61/106 (57.55%), Postives = 79/106 (74.53%), Query Frame = 0


Query: 49  ALSSSSSRDRHTKVNGRGRRVRMPALCASRIFQLTCELGHRSDGETIEWLLRQAEPSIIA 108
           A+    S+DRH+KV+GRGRR+RMP +CA+R+FQLT ELGH+SDG+TIEWLLRQAEPSIIA
Sbjct: 25  AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIA 84

Query: 109 ATGTGTVPAAPISTVSSVMASSAPSVACRVQPVAVAAAGGQGMFGM 155
           ATGTGT PA+   + +S+  SS  ++  RV       +GG G  G+
Sbjct: 85  ATGTGTTPAS--FSTASLSTSSPFTLGKRVVRAEEGESGGGGGGGL 128

The following BLAST results are available for this feature:

BLAST of Cp4.1LG19g03850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJK7	1.2e-29	49.44	Transcription factor TCP11 OS=Arabidopsis thaliana OX=3702 GN=TCP11 PE=1 SV=1	[more]
Q9C518	7.0e-25	56.30	Transcription factor TCP8 OS=Arabidopsis thaliana OX=3702 GN=TCP8 PE=1 SV=1	[more]
Q93Z00	1.2e-24	54.62	Transcription factor TCP14 OS=Arabidopsis thaliana OX=3702 GN=TCP14 PE=1 SV=1	[more]
Q9LSD5	3.5e-24	54.46	Transcription factor TCP20 OS=Arabidopsis thaliana OX=3702 GN=TCP20 PE=1 SV=1	[more]
Q53PH2	5.9e-24	63.95	Transcription factor PCF3 OS=Oryza sativa subsp. japonica OX=39947 GN=PCF3 PE=2 ...	[more]

BLAST of Cp4.1LG19g03850 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023518605.1	1.28e-140	100.00	transcription factor TCP11-like [Cucurbita pepo subsp. pepo]	[more]
XP_022972643.1	9.65e-136	97.13	transcription factor TCP11-like [Cucurbita maxima]	[more]
KAG6595232.1	9.59e-134	96.67	Transcription factor TCP11, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7027254.1	1.93e-133	96.19	Transcription factor TCP11, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022962907.1	1.31e-131	95.24	transcription factor TCP11-like [Cucurbita moschata]	[more]

BLAST of Cp4.1LG19g03850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IAL2	4.67e-136	97.13	transcription factor TCP11-like OS=Cucurbita maxima OX=3661 GN=LOC111471177 PE=4...	[more]
A0A6J1HDU7	6.32e-132	95.24	transcription factor TCP11-like OS=Cucurbita moschata OX=3662 GN=LOC111463270 PE...	[more]
A0A6J1EK07	6.07e-95	77.62	transcription factor TCP11-like OS=Cucurbita moschata OX=3662 GN=LOC111433306 PE...	[more]
A0A0A0KH86	2.18e-94	74.40	TCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G446400 PE=4 SV...	[more]
A0A5D3C791	2.77e-93	72.73	Transcription factor TCP11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of Cp4.1LG19g03850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37000.1	8.8e-31	49.44	TCP family transcription factor	[more]
AT1G58100.1	5.0e-26	56.30	TCP family transcription factor	[more]
AT3G47620.1	8.5e-26	54.62	TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14	[more]
AT3G27010.1	2.5e-25	54.46	TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20	[more]
AT5G08330.1	4.2e-25	57.55	TCP family transcription factor	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017887	Transcription factor TCP subgroup	PFAM	PF03634	TCP	coord: 54..131 e-value: 6.9E-28 score: 98.2
IPR017887	Transcription factor TCP subgroup	PROSITE	PS51369	TCP	coord: 55..109 score: 25.143118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..57
None	No IPR available	PANTHER	PTHR31072:SF4	TRANSCRIPTION FACTOR TCP16-RELATED	coord: 41..134
IPR005333	Transcription factor, TCP	PANTHER	PTHR31072	TRANSCRIPTION FACTOR TCP4-RELATED	coord: 41..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG19g03850.1	Cp4.1LG19g03850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity