Cp4.1LG19g03090 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG19g03090
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	Cp4.1LG19: 2526940 .. 2528401 (-)
RNA-Seq Expression	Cp4.1LG19g03090
Synteny	Cp4.1LG19g03090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGTCAGATGGATTCGTCTCACAATCCAACGGACATAAAATCCTCACGAACAGATTATGTGGCAATCGCCGATCACAATACCCTTTTCAAAACCACATAAAATCCGAACCACAATCCCTACTTCCATCTCATTCTCCTTCCTCAATCCCCCGTTCTCGACTCGCCGTCGTAATGGCCGCCACTTCCGCCGCCACCTCCTCCTTCATCGGAACACGCCTCGCCGACGTGCGGTCAAGTTCCGGCCGAGTCCAAGCCCGATTCTCATTCGGCAAAAAGAAAAGCCCGGCGAAGAAATCGCCTTCGTCAAAGCAGATTCCCGACCGACCTCTATGGTTCCCCGGAGCCAAGGCGCCGGAATGGCTCGACGGAAGCTTGGTCGGCGACTACGGATTCGATCCGTTCGGATTGGGGAAACCAGCAGAGTATCTGCAATACGATTTGGACTCGTTGGATCAGAATCTGGCGAAGAATGTGGCTGGAGATCTAATAGGGACGAGATTTGAGAATTCCGAAGTGAAATCGACGCCGTTTCAACCGTACACGGAGGTTTTTGGATTACAGAGATTTCGTGAGTGCGAGCTGATCCATGGAAGATGGGCAATGCTAGCAACCCTCGGCGCTCTCACCGTCGAATGGCTCACTGGCGTCACTTGGCAAGATGCTGGAAAGGTCAGTCAGTTGGTTCCATTTGATAGAGTGTTTTATTGTCCACTTTGAGCAGAAGTTTTGGTAGCTTTTCTTTAGACTTACGAGGGAAGCCTATACCAATAGAGATTTATTTCTTACTTATATCAACCTCTTACTTAGCTAATTTAGACCTATGGAGCCCTCGAACAACCTTCCCTTTATCGAGGCTCGATTTCTTCTTTGGAGTCCTGGAACAAACTACCTCATTTGTTCAACATTTGAAAATTCTATTCCATGTTAAGAATCATGATATTTGAGCATAAGTTTGTGACTCTCGAGAATGATATAATATTGTCCACTTTGAGCATAAGCTCTCGTAGCTTTGTTTTGGGTTTTCCCAGCCGGCTTGGTAGGAATGAAGATTCATTCTTGCTGACGTGGGACTCCCTCCCAACAAACTTGGTTGCAGGTAGAATTGGTGGAAGGGTCATCGTACCTCGGGCAGCCGCTTCCGTTCTCGCTCACGGCATTGATCTGGATCGAAGTTCTGGTGATCGGATACATCGAGTTTCAGAGGAACGCGGAGCTAGAGCCGGAGAAGAGATTGTACCCTGGAGGGAAGTTTTTCGACCCGCTGGGGTTGGCGGAGGATCCTGAGAAGAAAGCTGTTCTTCAACTGGCTGAGATCAAACACGCTCGCCTCGCCATGGTTGCCTTCCTTGGGTTCGCTGTTCAAGCTGCTGTGACGGGGAAAGGACCGCTCAATAACTGGGCCACCCATCTCAGCGACCCCCTCCACACCACCATCATTGACAACTTCTCCTCCTCTTCCTAA

mRNA sequence

CCGTCAGATGGATTCGTCTCACAATCCAACGGACATAAAATCCTCACGAACAGATTATGTGGCAATCGCCGATCACAATACCCTTTTCAAAACCACATAAAATCCGAACCACAATCCCTACTTCCATCTCATTCTCCTTCCTCAATCCCCCGTTCTCGACTCGCCGTCGTAATGGCCGCCACTTCCGCCGCCACCTCCTCCTTCATCGGAACACGCCTCGCCGACGTGCGGTCAAGTTCCGGCCGAGTCCAAGCCCGATTCTCATTCGGCAAAAAGAAAAGCCCGGCGAAGAAATCGCCTTCGTCAAAGCAGATTCCCGACCGACCTCTATGGTTCCCCGGAGCCAAGGCGCCGGAATGGCTCGACGGAAGCTTGGTCGGCGACTACGGATTCGATCCGTTCGGATTGGGGAAACCAGCAGAGTATCTGCAATACGATTTGGACTCGTTGGATCAGAATCTGGCGAAGAATGTGGCTGGAGATCTAATAGGGACGAGATTTGAGAATTCCGAAGTGAAATCGACGCCGTTTCAACCGTACACGGAGGTTTTTGGATTACAGAGATTTCGTGAGTGCGAGCTGATCCATGGAAGATGGGCAATGCTAGCAACCCTCGGCGCTCTCACCGTCGAATGGCTCACTGGCCCGCTTCCGTTCTCGCTCACGGCATTGATCTGGATCGAAGTTCTGGTGATCGGATACATCGAGTTTCAGAGGAACGCGGAGCTAGAGCCGGAGAAGAGATTGTACCCTGGAGGGAAGTTTTTCGACCCGCTGGGGTTGGCGGAGGATCCTGAGAAGAAAGCTGTTCTTCAACTGGCTGAGATCAAACACGCTCGCCTCGCCATGGTTGCCTTCCTTGGGTTCGCTGTTCAAGCTGCTGTGACGGGGAAAGGACCGCTCAATAACTGGGCCACCCATCTCAGCGACCCCCTCCACACCACCATCATTGACAACTTCTCCTCCTCTTCCTAA

Coding sequence (CDS)

CCGTCAGATGGATTCGTCTCACAATCCAACGGACATAAAATCCTCACGAACAGATTATGTGGCAATCGCCGATCACAATACCCTTTTCAAAACCACATAAAATCCGAACCACAATCCCTACTTCCATCTCATTCTCCTTCCTCAATCCCCCGTTCTCGACTCGCCGTCGTAATGGCCGCCACTTCCGCCGCCACCTCCTCCTTCATCGGAACACGCCTCGCCGACGTGCGGTCAAGTTCCGGCCGAGTCCAAGCCCGATTCTCATTCGGCAAAAAGAAAAGCCCGGCGAAGAAATCGCCTTCGTCAAAGCAGATTCCCGACCGACCTCTATGGTTCCCCGGAGCCAAGGCGCCGGAATGGCTCGACGGAAGCTTGGTCGGCGACTACGGATTCGATCCGTTCGGATTGGGGAAACCAGCAGAGTATCTGCAATACGATTTGGACTCGTTGGATCAGAATCTGGCGAAGAATGTGGCTGGAGATCTAATAGGGACGAGATTTGAGAATTCCGAAGTGAAATCGACGCCGTTTCAACCGTACACGGAGGTTTTTGGATTACAGAGATTTCGTGAGTGCGAGCTGATCCATGGAAGATGGGCAATGCTAGCAACCCTCGGCGCTCTCACCGTCGAATGGCTCACTGGCCCGCTTCCGTTCTCGCTCACGGCATTGATCTGGATCGAAGTTCTGGTGATCGGATACATCGAGTTTCAGAGGAACGCGGAGCTAGAGCCGGAGAAGAGATTGTACCCTGGAGGGAAGTTTTTCGACCCGCTGGGGTTGGCGGAGGATCCTGAGAAGAAAGCTGTTCTTCAACTGGCTGAGATCAAACACGCTCGCCTCGCCATGGTTGCCTTCCTTGGGTTCGCTGTTCAAGCTGCTGTGACGGGGAAAGGACCGCTCAATAACTGGGCCACCCATCTCAGCGACCCCCTCCACACCACCATCATTGACAACTTCTCCTCCTCTTCCTAA

Protein sequence

PSDGFVSQSNGHKILTNRLCGNRRSQYPFQNHIKSEPQSLLPSHSPSSIPRSRLAVVMAATSAATSSFIGTRLADVRSSSGRVQARFSFGKKKSPAKKSPSSKQIPDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDLIGTRFENSEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGPLPFSLTALIWIEVLVIGYIEFQRNAELEPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSSSS

Homology

[Close]

BLAST of Cp4.1LG19g03090 vs. ExPASy Swiss-Prot
Match: Q07473 (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 422.5 bits (1085), Expect = 4.2e-117
Identity = 217/290 (74.83%), Postives = 236/290 (81.38%), Query Frame = 0


Query: 58  MAATS---AATSSFIGTRLA-DVRSSSGRVQARFSFGKKKSPAKKSPSSKQIPDRPLWFP 117
           MAATS   AA SS +GTR+A  +   SGR  A F FGKKK+  KKS       DRPLW+P
Sbjct: 1   MAATSAAAAAASSIMGTRVAPGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYP 60

Query: 118 GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDLIGTRFENSEVK 177
           GA +P+WLDGSLVGDYGFDPFGLGKPAEYLQ+D+DSLDQNLAKN+AGD+IGTR E ++ K
Sbjct: 61  GAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAK 120

Query: 178 STPFQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG------------------ 237
           STPFQPY+EVFG+QRFRECELIHGRWAMLATLGAL+VEWLTG                  
Sbjct: 121 STPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYL 180

Query: 238 --PLPFSLTALIWIEVLVIGYIEFQRNAELEPEKRLYPGGKFFDPLGLAEDPEKKAVLQL 297
             PLPFS++ LIWIEVLVIGYIEFQRNAEL+ EKRLYPGGKFFDPLGLA DPEK A LQL
Sbjct: 181 GQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQL 240

Query: 298 AEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSSS 324
           AEIKHARLAMVAFLGFAVQAA TGKGPLNNWATHLSDPLHTTIID FSSS
Sbjct: 241 AEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 290

[Close]

BLAST of Cp4.1LG19g03090 vs. ExPASy Swiss-Prot
Match: Q9XF88 (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 418.7 bits (1075), Expect = 6.0e-116
Identity = 218/289 (75.43%), Postives = 238/289 (82.35%), Query Frame = 0


Query: 58  MAATS--AATSSFIGTR-LADVRSSSGRVQARFSFGKKKSPAKKSPSSKQIPDRPLWFPG 117
           MAATS  AA SS +GTR ++D+ S+S R  ARF FG KK+  KK+ +   I DRPLWFPG
Sbjct: 1   MAATSTAAAASSIMGTRVVSDISSNSSRFTARFGFGTKKASPKKAKT--VISDRPLWFPG 60

Query: 118 AKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDLIGTRFENSEVKS 177
           AK+PE+LDGSLVGDYGFDPFGLGKPAEYLQ+DLDSLDQNLAKN+ G++IGTR E  + KS
Sbjct: 61  AKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKS 120

Query: 178 TPFQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG------------------- 237
           TPFQPY+EVFGLQRFRECELIHGRWAMLATLGA+TVEWLTG                   
Sbjct: 121 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLG 180

Query: 238 -PLPFSLTALIWIEVLVIGYIEFQRNAELEPEKRLYPGGKFFDPLGLAEDPEKKAVLQLA 297
            PLPFS++ LIWIEVLVIGYIEFQRNAEL+ EKRLYPGGKFFDPLGLA DP KKA LQLA
Sbjct: 181 QPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLA 240

Query: 298 EIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSSS 324
           EIKHARLAMV FLGFAVQAA TGKGPLNNWATHLSDPLHTTIID FSSS
Sbjct: 241 EIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 287

[Close]

BLAST of Cp4.1LG19g03090 vs. ExPASy Swiss-Prot
Match: Q9S7W1 (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.3 PE=2 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 3.4e-95
Identity = 184/270 (68.15%), Postives = 206/270 (76.30%), Query Frame = 0


Query: 61  TSAATSSFIGTRLADVRSSSGRVQAR--FSFGKKK--SPAKKSPSSKQIPDRPLWFPGAK 120
           T+AA S   G R+ D R  +GRVQAR  FSFGKKK   P KKS   +   DR +WFPGA 
Sbjct: 5   TAAAASGIFGIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFPGAN 64

Query: 121 APEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDLIGTRFENSEVKSTP 180
            PEWLDGS++GD GFDPFGLGKPAEYLQYD D LDQNLAKNVAGD+IG   E+SE+K TP
Sbjct: 65  PPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTP 124

Query: 181 FQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG--------------------P 240
           FQPYTEVFG+QRFRECELIHGRWAML TLGA+ VE LTG                    P
Sbjct: 125 FQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQP 184

Query: 241 LPFSLTALIWIEVLVIGYIEFQRNAELEPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEI 300
           LPFSLT LIWIEVLV+GYIEFQRN+EL+PEKR+YPGG +FDPLGLA DPEK   L+LAEI
Sbjct: 185 LPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGG-YFDPLGLAADPEKLDTLKLAEI 244

Query: 301 KHARLAMVAFLGFAVQAAVTGKGPLNNWAT 307
           KH+RLAMVAFL FA+QAA TGKGP++  AT
Sbjct: 245 KHSRLAMVAFLIFALQAAFTGKGPVSFLAT 273

[Close]

BLAST of Cp4.1LG19g03090 vs. ExPASy Swiss-Prot
Match: Q93WD2 (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii OX=3055 GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 213.0 bits (541), Expect = 5.0e-54
Identity = 118/218 (54.13%), Postives = 138/218 (63.30%), Query Frame = 0


Query: 110 LWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDLIG-TRFE 169
           LW P    PEWLDGSL GD GFDP GL KP+E++   +D  DQN AKN  G +    +  
Sbjct: 52  LWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQAT 111

Query: 170 NSEVKS-TPFQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG------------ 229
             EV S     PY+EVFGL RFRECELIHGRWAMLA LGAL  E  TG            
Sbjct: 112 PDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVELD 171

Query: 230 -------PLPFSLTALIWIEVLVIGYIEFQRNAELEPEKRLYPGGKFFDPLGLAEDPEKK 289
                   LPFS+T LIWIEV+++G  EF RN+E  PEKR YPGG  FDPL LA + E++
Sbjct: 172 GASYAGLSLPFSITQLIWIEVILVGGAEFYRNSETNPEKRCYPGG-VFDPLKLASEDEER 231

Query: 290 AV-LQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWA 306
           A  L+ AEIKHARLAMV+F G+ VQA  TG+G L + A
Sbjct: 232 AFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLA 268

[Close]

BLAST of Cp4.1LG19g03090 vs. ExPASy Swiss-Prot
Match: Q01667 (Chlorophyll a-b binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA1 PE=1 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.4e-32
Identity = 90/233 (38.63%), Postives = 118/233 (50.64%), Query Frame = 0


Query: 111 WFPGAKAPEWLDGSLVGDYGFDPFGLGK-PAEYLQYDLDSLDQNLAKNVAGDLIGTRFEN 170
           W PG   P +LDGS  GD+GFDP GLG+ PA                             
Sbjct: 48  WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPA----------------------------- 107

Query: 171 SEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALTVE------------------ 230
                           L+R++E ELIH RWAMLA  G L  E                  
Sbjct: 108 ---------------NLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPG 167

Query: 231 ----WLTGPLPF-SLTALIWIEVLVIGYIEFQRNAELEPEKRLYPGGKFFDPLGLAEDPE 290
               +L  P+P+ +L  ++ IE L I ++E QR+ E +PEK+ YPGG  FDPLG ++DP+
Sbjct: 168 GQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGA-FDPLGYSKDPK 227

Query: 291 KKAVLQLAEIKHARLAMVAFLGFAV-QAAVTGKGPLNNWATHLSDPLHTTIID 319
           K   L++ EIK+ RLA++AF+GF V Q+A  G GPL N ATHL+DP H  I D
Sbjct: 228 KLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 235

[Close]

BLAST of Cp4.1LG19g03090 vs. NCBI nr
Match: XP_022966541.1 (chlorophyll a-b binding protein CP29.1, chloroplastic-like [Cucurbita maxima] >XP_023517083.1 chlorophyll a-b binding protein CP29.1, chloroplastic-like [Cucurbita pepo subsp. pepo] >KAG7027389.1 Chlorophyll a-b binding protein CP29.2, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 519 bits (1337), Expect = 3.54e-184
Identity = 267/287 (93.03%), Postives = 267/287 (93.03%), Query Frame = 0


Query: 58  MAATSAATSSFIGTRLADVRSSSGRVQARFSFGKKKSPAKKSPSSKQIPDRPLWFPGAKA 117
           MAATSAATSSFIGTRLADVRSSSGRVQARFSFGKKKSPAKKSPSSKQIPDRPLWFPGAKA
Sbjct: 1   MAATSAATSSFIGTRLADVRSSSGRVQARFSFGKKKSPAKKSPSSKQIPDRPLWFPGAKA 60

Query: 118 PEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDLIGTRFENSEVKSTPF 177
           PEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDLIGTRFENSEVKSTPF
Sbjct: 61  PEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDLIGTRFENSEVKSTPF 120

Query: 178 QPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG--------------------PL 237
           QPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG                    PL
Sbjct: 121 QPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPL 180

Query: 238 PFSLTALIWIEVLVIGYIEFQRNAELEPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIK 297
           PFSLTALIWIEVLVIGYIEFQRNAELEPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIK
Sbjct: 181 PFSLTALIWIEVLVIGYIEFQRNAELEPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIK 240

Query: 298 HARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSSSS 324
           HARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSSSS
Sbjct: 241 HARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSSSS 287

[Close]

BLAST of Cp4.1LG19g03090 vs. NCBI nr
Match: XP_022931964.1 (chlorophyll a-b binding protein CP29.1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 516 bits (1328), Expect = 8.01e-183
Identity = 265/286 (92.66%), Postives = 265/286 (92.66%), Query Frame = 0


Query: 58  MAATSAATSSFIGTRLADVRSSSGRVQARFSFGKKKSPAKKSPSSKQIPDRPLWFPGAKA 117
           MAATSAATSSFIGTRLADVRSSSGRVQARFSFGKKKSPAKK PSSKQIPDRPLWFPGAKA
Sbjct: 1   MAATSAATSSFIGTRLADVRSSSGRVQARFSFGKKKSPAKKLPSSKQIPDRPLWFPGAKA 60

Query: 118 PEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDLIGTRFENSEVKSTPF 177
           PEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDLIGTRFENSEVKSTPF
Sbjct: 61  PEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDLIGTRFENSEVKSTPF 120

Query: 178 QPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG--------------------PL 237
           QPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG                    PL
Sbjct: 121 QPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPL 180

Query: 238 PFSLTALIWIEVLVIGYIEFQRNAELEPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIK 297
           PFSLTALIWIEVLVIGYIEFQRNAELEPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIK
Sbjct: 181 PFSLTALIWIEVLVIGYIEFQRNAELEPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIK 240

Query: 298 HARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSSS 323
           HARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSSS
Sbjct: 241 HARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSSS 286

[Close]

BLAST of Cp4.1LG19g03090 vs. NCBI nr
Match: XP_008449241.1 (PREDICTED: chlorophyll a-b binding protein CP29.1, chloroplastic-like [Cucumis melo] >KAA0045037.1 chlorophyll a-b binding protein CP29.1 [Cucumis melo var. makuwa] >TYJ96289.1 chlorophyll a-b binding protein CP29.1 [Cucumis melo var. makuwa])

HSP 1 Score: 488 bits (1257), Expect = 4.85e-172
Identity = 248/283 (87.63%), Postives = 256/283 (90.46%), Query Frame = 0


Query: 60  ATSAATSSFIGTRLADVRSSSGRVQARFSFGKKKSPAKKSPSSKQIPDRPLWFPGAKAPE 119
           AT+AATSSFIGTRLA++  SSGRVQARF FGKKKSP KKSPSSK I DRPLWFPGAKAPE
Sbjct: 2   ATAAATSSFIGTRLAEIVPSSGRVQARFGFGKKKSPPKKSPSSKGISDRPLWFPGAKAPE 61

Query: 120 WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDLIGTRFENSEVKSTPFQP 179
           WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGD+IGTRFE++EVKSTPFQP
Sbjct: 62  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQP 121

Query: 180 YTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG--------------------PLPF 239
           YTEVFGLQRFRECELIHGRWAMLATLGAL+VEWLTG                    PLPF
Sbjct: 122 YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF 181

Query: 240 SLTALIWIEVLVIGYIEFQRNAELEPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 299
           SLT LIWIEVLVIGYIEFQRNAEL+PEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA
Sbjct: 182 SLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 241

Query: 300 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 322
           RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS
Sbjct: 242 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 284

[Close]

BLAST of Cp4.1LG19g03090 vs. NCBI nr
Match: XP_004147887.1 (chlorophyll a-b binding protein CP29.1, chloroplastic [Cucumis sativus] >KGN54365.1 hypothetical protein Csa_017948 [Cucumis sativus])

HSP 1 Score: 487 bits (1253), Expect = 1.97e-171
Identity = 246/283 (86.93%), Postives = 256/283 (90.46%), Query Frame = 0


Query: 60  ATSAATSSFIGTRLADVRSSSGRVQARFSFGKKKSPAKKSPSSKQIPDRPLWFPGAKAPE 119
           AT+AATSSF+GTRLA++  SSGRVQARF FGKKKSP KKSPSSK I DRPLWFPGAKAPE
Sbjct: 2   ATAAATSSFLGTRLAEIVPSSGRVQARFGFGKKKSPPKKSPSSKVISDRPLWFPGAKAPE 61

Query: 120 WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDLIGTRFENSEVKSTPFQP 179
           WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGD+IGTRFE++EVKSTPFQP
Sbjct: 62  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQP 121

Query: 180 YTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG--------------------PLPF 239
           YTEVFGLQRFRECELIHGRWAMLATLGAL+VEWLTG                    PLPF
Sbjct: 122 YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF 181

Query: 240 SLTALIWIEVLVIGYIEFQRNAELEPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 299
           S+T LIWIEVLVIGYIEFQRNAEL+PEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA
Sbjct: 182 SITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 241

Query: 300 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 322
           RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS
Sbjct: 242 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 284

[Close]

BLAST of Cp4.1LG19g03090 vs. NCBI nr
Match: XP_038882769.1 (chlorophyll a-b binding protein CP29.1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 487 bits (1253), Expect = 1.97e-171
Identity = 246/283 (86.93%), Postives = 255/283 (90.11%), Query Frame = 0


Query: 60  ATSAATSSFIGTRLADVRSSSGRVQARFSFGKKKSPAKKSPSSKQIPDRPLWFPGAKAPE 119
           AT+AATSSFIGTRLA++R  SGRVQARF FGKKKSP KKSPSSK I DRPLWFPGAKAPE
Sbjct: 2   ATAAATSSFIGTRLAELRPCSGRVQARFGFGKKKSPPKKSPSSKTISDRPLWFPGAKAPE 61

Query: 120 WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDLIGTRFENSEVKSTPFQP 179
           WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGD+IGTRFE++EVKSTPFQP
Sbjct: 62  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQP 121

Query: 180 YTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG--------------------PLPF 239
           YTEVFGLQRFRECELIHGRWAMLATLGAL+VEWLTG                    PLPF
Sbjct: 122 YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF 181

Query: 240 SLTALIWIEVLVIGYIEFQRNAELEPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 299
           S+T LIWIEVLVIGYIEFQRNAEL+PEKRLYPGGKFFDPLGLAEDPEKK VLQLAEIKHA
Sbjct: 182 SITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKVVLQLAEIKHA 241

Query: 300 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 322
           RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS
Sbjct: 242 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 284

[Close]

BLAST of Cp4.1LG19g03090 vs. ExPASy TrEMBL
Match: A0A6J1HPL7 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111466190 PE=3 SV=1)

HSP 1 Score: 519 bits (1337), Expect = 1.71e-184
Identity = 267/287 (93.03%), Postives = 267/287 (93.03%), Query Frame = 0


Query: 58  MAATSAATSSFIGTRLADVRSSSGRVQARFSFGKKKSPAKKSPSSKQIPDRPLWFPGAKA 117
           MAATSAATSSFIGTRLADVRSSSGRVQARFSFGKKKSPAKKSPSSKQIPDRPLWFPGAKA
Sbjct: 1   MAATSAATSSFIGTRLADVRSSSGRVQARFSFGKKKSPAKKSPSSKQIPDRPLWFPGAKA 60

Query: 118 PEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDLIGTRFENSEVKSTPF 177
           PEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDLIGTRFENSEVKSTPF
Sbjct: 61  PEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDLIGTRFENSEVKSTPF 120

Query: 178 QPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG--------------------PL 237
           QPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG                    PL
Sbjct: 121 QPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPL 180

Query: 238 PFSLTALIWIEVLVIGYIEFQRNAELEPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIK 297
           PFSLTALIWIEVLVIGYIEFQRNAELEPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIK
Sbjct: 181 PFSLTALIWIEVLVIGYIEFQRNAELEPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIK 240

Query: 298 HARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSSSS 324
           HARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSSSS
Sbjct: 241 HARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSSSS 287

[Close]

BLAST of Cp4.1LG19g03090 vs. ExPASy TrEMBL
Match: A0A6J1EVQ5 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111438232 PE=3 SV=1)

HSP 1 Score: 516 bits (1328), Expect = 3.88e-183
Identity = 265/286 (92.66%), Postives = 265/286 (92.66%), Query Frame = 0


Query: 58  MAATSAATSSFIGTRLADVRSSSGRVQARFSFGKKKSPAKKSPSSKQIPDRPLWFPGAKA 117
           MAATSAATSSFIGTRLADVRSSSGRVQARFSFGKKKSPAKK PSSKQIPDRPLWFPGAKA
Sbjct: 1   MAATSAATSSFIGTRLADVRSSSGRVQARFSFGKKKSPAKKLPSSKQIPDRPLWFPGAKA 60

Query: 118 PEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDLIGTRFENSEVKSTPF 177
           PEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDLIGTRFENSEVKSTPF
Sbjct: 61  PEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDLIGTRFENSEVKSTPF 120

Query: 178 QPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG--------------------PL 237
           QPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG                    PL
Sbjct: 121 QPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPL 180

Query: 238 PFSLTALIWIEVLVIGYIEFQRNAELEPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIK 297
           PFSLTALIWIEVLVIGYIEFQRNAELEPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIK
Sbjct: 181 PFSLTALIWIEVLVIGYIEFQRNAELEPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIK 240

Query: 298 HARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSSS 323
           HARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSSS
Sbjct: 241 HARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSSS 286

[Close]

BLAST of Cp4.1LG19g03090 vs. ExPASy TrEMBL
Match: A0A5D3BBB3 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00840 PE=3 SV=1)

HSP 1 Score: 488 bits (1257), Expect = 2.35e-172
Identity = 248/283 (87.63%), Postives = 256/283 (90.46%), Query Frame = 0


Query: 60  ATSAATSSFIGTRLADVRSSSGRVQARFSFGKKKSPAKKSPSSKQIPDRPLWFPGAKAPE 119
           AT+AATSSFIGTRLA++  SSGRVQARF FGKKKSP KKSPSSK I DRPLWFPGAKAPE
Sbjct: 2   ATAAATSSFIGTRLAEIVPSSGRVQARFGFGKKKSPPKKSPSSKGISDRPLWFPGAKAPE 61

Query: 120 WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDLIGTRFENSEVKSTPFQP 179
           WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGD+IGTRFE++EVKSTPFQP
Sbjct: 62  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQP 121

Query: 180 YTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG--------------------PLPF 239
           YTEVFGLQRFRECELIHGRWAMLATLGAL+VEWLTG                    PLPF
Sbjct: 122 YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF 181

Query: 240 SLTALIWIEVLVIGYIEFQRNAELEPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 299
           SLT LIWIEVLVIGYIEFQRNAEL+PEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA
Sbjct: 182 SLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 241

Query: 300 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 322
           RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS
Sbjct: 242 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 284

[Close]

BLAST of Cp4.1LG19g03090 vs. ExPASy TrEMBL
Match: A0A1S3BMH8 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491174 PE=3 SV=1)

HSP 1 Score: 488 bits (1257), Expect = 2.35e-172
Identity = 248/283 (87.63%), Postives = 256/283 (90.46%), Query Frame = 0


Query: 60  ATSAATSSFIGTRLADVRSSSGRVQARFSFGKKKSPAKKSPSSKQIPDRPLWFPGAKAPE 119
           AT+AATSSFIGTRLA++  SSGRVQARF FGKKKSP KKSPSSK I DRPLWFPGAKAPE
Sbjct: 2   ATAAATSSFIGTRLAEIVPSSGRVQARFGFGKKKSPPKKSPSSKGISDRPLWFPGAKAPE 61

Query: 120 WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDLIGTRFENSEVKSTPFQP 179
           WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGD+IGTRFE++EVKSTPFQP
Sbjct: 62  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQP 121

Query: 180 YTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG--------------------PLPF 239
           YTEVFGLQRFRECELIHGRWAMLATLGAL+VEWLTG                    PLPF
Sbjct: 122 YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF 181

Query: 240 SLTALIWIEVLVIGYIEFQRNAELEPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 299
           SLT LIWIEVLVIGYIEFQRNAEL+PEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA
Sbjct: 182 SLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 241

Query: 300 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 322
           RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS
Sbjct: 242 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 284

[Close]

BLAST of Cp4.1LG19g03090 vs. ExPASy TrEMBL
Match: A0A0A0KXI3 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_4G308550 PE=3 SV=1)

HSP 1 Score: 487 bits (1253), Expect = 9.55e-172
Identity = 246/283 (86.93%), Postives = 256/283 (90.46%), Query Frame = 0


Query: 60  ATSAATSSFIGTRLADVRSSSGRVQARFSFGKKKSPAKKSPSSKQIPDRPLWFPGAKAPE 119
           AT+AATSSF+GTRLA++  SSGRVQARF FGKKKSP KKSPSSK I DRPLWFPGAKAPE
Sbjct: 2   ATAAATSSFLGTRLAEIVPSSGRVQARFGFGKKKSPPKKSPSSKVISDRPLWFPGAKAPE 61

Query: 120 WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDLIGTRFENSEVKSTPFQP 179
           WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGD+IGTRFE++EVKSTPFQP
Sbjct: 62  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQP 121

Query: 180 YTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG--------------------PLPF 239
           YTEVFGLQRFRECELIHGRWAMLATLGAL+VEWLTG                    PLPF
Sbjct: 122 YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF 181

Query: 240 SLTALIWIEVLVIGYIEFQRNAELEPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 299
           S+T LIWIEVLVIGYIEFQRNAEL+PEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA
Sbjct: 182 SITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 241

Query: 300 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 322
           RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS
Sbjct: 242 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 284

[Close]

BLAST of Cp4.1LG19g03090 vs. TAIR 10
Match: AT5G01530.1 (light harvesting complex photosystem II )

HSP 1 Score: 422.5 bits (1085), Expect = 3.0e-118
Identity = 217/290 (74.83%), Postives = 236/290 (81.38%), Query Frame = 0


Query: 58  MAATS---AATSSFIGTRLA-DVRSSSGRVQARFSFGKKKSPAKKSPSSKQIPDRPLWFP 117
           MAATS   AA SS +GTR+A  +   SGR  A F FGKKK+  KKS       DRPLW+P
Sbjct: 1   MAATSAAAAAASSIMGTRVAPGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYP 60

Query: 118 GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDLIGTRFENSEVK 177
           GA +P+WLDGSLVGDYGFDPFGLGKPAEYLQ+D+DSLDQNLAKN+AGD+IGTR E ++ K
Sbjct: 61  GAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAK 120

Query: 178 STPFQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG------------------ 237
           STPFQPY+EVFG+QRFRECELIHGRWAMLATLGAL+VEWLTG                  
Sbjct: 121 STPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYL 180

Query: 238 --PLPFSLTALIWIEVLVIGYIEFQRNAELEPEKRLYPGGKFFDPLGLAEDPEKKAVLQL 297
             PLPFS++ LIWIEVLVIGYIEFQRNAEL+ EKRLYPGGKFFDPLGLA DPEK A LQL
Sbjct: 181 GQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQL 240

Query: 298 AEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSSS 324
           AEIKHARLAMVAFLGFAVQAA TGKGPLNNWATHLSDPLHTTIID FSSS
Sbjct: 241 AEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 290

[Close]

BLAST of Cp4.1LG19g03090 vs. TAIR 10
Match: AT3G08940.2 (light harvesting complex photosystem II )

HSP 1 Score: 418.7 bits (1075), Expect = 4.3e-117
Identity = 218/289 (75.43%), Postives = 238/289 (82.35%), Query Frame = 0


Query: 58  MAATS--AATSSFIGTR-LADVRSSSGRVQARFSFGKKKSPAKKSPSSKQIPDRPLWFPG 117
           MAATS  AA SS +GTR ++D+ S+S R  ARF FG KK+  KK+ +   I DRPLWFPG
Sbjct: 1   MAATSTAAAASSIMGTRVVSDISSNSSRFTARFGFGTKKASPKKAKT--VISDRPLWFPG 60

Query: 118 AKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDLIGTRFENSEVKS 177
           AK+PE+LDGSLVGDYGFDPFGLGKPAEYLQ+DLDSLDQNLAKN+ G++IGTR E  + KS
Sbjct: 61  AKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKS 120

Query: 178 TPFQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG------------------- 237
           TPFQPY+EVFGLQRFRECELIHGRWAMLATLGA+TVEWLTG                   
Sbjct: 121 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLG 180

Query: 238 -PLPFSLTALIWIEVLVIGYIEFQRNAELEPEKRLYPGGKFFDPLGLAEDPEKKAVLQLA 297
            PLPFS++ LIWIEVLVIGYIEFQRNAEL+ EKRLYPGGKFFDPLGLA DP KKA LQLA
Sbjct: 181 QPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLA 240

Query: 298 EIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSSS 324
           EIKHARLAMV FLGFAVQAA TGKGPLNNWATHLSDPLHTTIID FSSS
Sbjct: 241 EIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 287

[Close]

BLAST of Cp4.1LG19g03090 vs. TAIR 10
Match: AT2G40100.1 (light harvesting complex photosystem II )

HSP 1 Score: 349.7 bits (896), Expect = 2.4e-96
Identity = 184/270 (68.15%), Postives = 206/270 (76.30%), Query Frame = 0


Query: 61  TSAATSSFIGTRLADVRSSSGRVQAR--FSFGKKK--SPAKKSPSSKQIPDRPLWFPGAK 120
           T+AA S   G R+ D R  +GRVQAR  FSFGKKK   P KKS   +   DR +WFPGA 
Sbjct: 5   TAAAASGIFGIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFPGAN 64

Query: 121 APEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDLIGTRFENSEVKSTP 180
            PEWLDGS++GD GFDPFGLGKPAEYLQYD D LDQNLAKNVAGD+IG   E+SE+K TP
Sbjct: 65  PPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTP 124

Query: 181 FQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG--------------------P 240
           FQPYTEVFG+QRFRECELIHGRWAML TLGA+ VE LTG                    P
Sbjct: 125 FQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQP 184

Query: 241 LPFSLTALIWIEVLVIGYIEFQRNAELEPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEI 300
           LPFSLT LIWIEVLV+GYIEFQRN+EL+PEKR+YPGG +FDPLGLA DPEK   L+LAEI
Sbjct: 185 LPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGG-YFDPLGLAADPEKLDTLKLAEI 244

Query: 301 KHARLAMVAFLGFAVQAAVTGKGPLNNWAT 307
           KH+RLAMVAFL FA+QAA TGKGP++  AT
Sbjct: 245 KHSRLAMVAFLIFALQAAFTGKGPVSFLAT 273

[Close]

BLAST of Cp4.1LG19g03090 vs. TAIR 10
Match: AT3G08940.1 (light harvesting complex photosystem II )

HSP 1 Score: 236.9 bits (603), Expect = 2.3e-62
Identity = 121/161 (75.16%), Postives = 138/161 (85.71%), Query Frame = 0


Query: 58  MAATS--AATSSFIGTR-LADVRSSSGRVQARFSFGKKKSPAKKSPSSKQIPDRPLWFPG 117
           MAATS  AA SS +GTR ++D+ S+S R  ARF FG KK+  KK+ +   I DRPLWFPG
Sbjct: 1   MAATSTAAAASSIMGTRVVSDISSNSSRFTARFGFGTKKASPKKAKT--VISDRPLWFPG 60

Query: 118 AKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDLIGTRFENSEVKS 177
           AK+PE+LDGSLVGDYGFDPFGLGKPAEYLQ+DLDSLDQNLAKN+ G++IGTR E  + KS
Sbjct: 61  AKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKS 120

Query: 178 TPFQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG 216
           TPFQPY+EVFGLQRFRECELIHGRWAMLATLGA+TVEWLTG
Sbjct: 121 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTG 159

[Close]

BLAST of Cp4.1LG19g03090 vs. TAIR 10
Match: AT2G40100.2 (light harvesting complex photosystem II )

HSP 1 Score: 224.2 bits (570), Expect = 1.5e-58
Identity = 113/159 (71.07%), Postives = 125/159 (78.62%), Query Frame = 0


Query: 61  TSAATSSFIGTRLADVRSSSGRVQAR--FSFGKKK--SPAKKSPSSKQIPDRPLWFPGAK 120
           T+AA S   G R+ D R  +GRVQAR  FSFGKKK   P KKS   +   DR +WFPGA 
Sbjct: 5   TAAAASGIFGIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFPGAN 64

Query: 121 APEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDLIGTRFENSEVKSTP 180
            PEWLDGS++GD GFDPFGLGKPAEYLQYD D LDQNLAKNVAGD+IG   E+SE+K TP
Sbjct: 65  PPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTP 124

Query: 181 FQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG 216
           FQPYTEVFG+QRFRECELIHGRWAML TLGA+ VE LTG
Sbjct: 125 FQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTG 163

The following BLAST results are available for this feature:

BLAST of Cp4.1LG19g03090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q07473	4.2e-117	74.83	Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana OX...	[more]
Q9XF88	6.0e-116	75.43	Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana OX...	[more]
Q9S7W1	3.4e-95	68.15	Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana OX...	[more]
Q93WD2	5.0e-54	54.13	Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii OX=3055 GN=Lhc...	[more]
Q01667	1.4e-32	38.63	Chlorophyll a-b binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of Cp4.1LG19g03090 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022966541.1	3.54e-184	93.03	chlorophyll a-b binding protein CP29.1, chloroplastic-like [Cucurbita maxima] >X...	[more]
XP_022931964.1	8.01e-183	92.66	chlorophyll a-b binding protein CP29.1, chloroplastic-like [Cucurbita moschata]	[more]
XP_008449241.1	4.85e-172	87.63	PREDICTED: chlorophyll a-b binding protein CP29.1, chloroplastic-like [Cucumis m...	[more]
XP_004147887.1	1.97e-171	86.93	chlorophyll a-b binding protein CP29.1, chloroplastic [Cucumis sativus] >KGN5436...	[more]
XP_038882769.1	1.97e-171	86.93	chlorophyll a-b binding protein CP29.1, chloroplastic-like [Benincasa hispida]	[more]

BLAST of Cp4.1LG19g03090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HPL7	1.71e-184	93.03	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1EVQ5	3.88e-183	92.66	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A5D3BBB3	2.35e-172	87.63	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3BMH8	2.35e-172	87.63	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A0A0KXI3	9.55e-172	86.93	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]

BLAST of Cp4.1LG19g03090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01530.1	3.0e-118	74.83	light harvesting complex photosystem II	[more]
AT3G08940.2	4.3e-117	75.43	light harvesting complex photosystem II	[more]
AT2G40100.1	2.4e-96	68.15	light harvesting complex photosystem II	[more]
AT3G08940.1	2.3e-62	75.16	light harvesting complex photosystem II	[more]
AT2G40100.2	1.5e-58	71.07	light harvesting complex photosystem II	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 216..324 e-value: 2.0E-39 score: 137.5
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 108..215 e-value: 8.6E-23 score: 83.2
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 117..293 e-value: 2.3E-47 score: 161.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..108
None	No IPR available	PANTHER	PTHR21649:SF71	CHLOROPHYLL A-B BINDING PROTEIN CP29.2, CHLOROPLASTIC	coord: 58..215 coord: 216..323
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 104..321
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 58..215 coord: 216..323

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG19g03090.1	Cp4.1LG19g03090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding