Cp4.1LG19g01310 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG19g01310
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG19: 1057537 .. 1062784 (+)
RNA-Seq Expression	Cp4.1LG19g01310
Synteny	Cp4.1LG19g01310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACGAACAAACCAACAAAAGAAAATAAGATCCTTAGTTCTTCTTCTTCTTGCCCTTCGCCATTGCAGTGCCGCTTTCGCGAGCTTCAATTTCATAGAAAAACTTGGGCGCTTTCTGATTGTGGCTCAAACTCCTAGTGGTTCGTGAAATCCCCATCATTGAATTCACTCTGTTTAATACTTTTACACCCTTCCGATCTTCCTTTGATTCTCTATTCACTGATTCACCTTCTTCTTCTCCTATTTTTCTGTCGATCCCCATGGATCTACAGCTTCTTGAAAATGCCAGTTCCGGATGGCTTCTCATGCTCCGCCGCCCTACGTTCGTCATTGATTTGCTCAGCAATGGTGGATTCTTGAAGAACAAGCAAATCACTGTACAGTCGTCGATCGTCAACCCTATAAATTTGCGTTTCCATTCTCGTGCTGCTAGTTTCACTACTAATTTCGCCGCCATGGATCGGTTCTTTGCTGAAGCAACTATGTTGATTACTTGCTTGTTCGTCAGTACATCCCAGATCTGCGAGTTCGTGGTAAGAGTTGAAAAATTAGCGTTATCTTTAACAATGCCGAATAGGTTTCTTTTGATTTTGTCTTTAAATTTTGACTCACTCCATCTGTTGCTAGAACGATGAACTCGTCTTTTCTTGTGAGTTTTCTGTAGGCGACTTCAGGGGTTGGGATGAGGCCGTAATCCTTGAGGCAAAAATCTCCAAAGGATCTTGACATGGCGAGGCCAGGATAATCTGCATCTGGTACCCATACTCTGAAAATATCTGGTTCTTCTTTATCTGTTGTGATTCTCCCCTGGCATTTCTTTATTCTTTCTGCTTCGCCTGTTTCACATTCAAAACATAATACTCAAGATTAATGGATAGATACCAAAAGGTCATAGGTTCAAGTTTTCACACCTTATTAGAACCAAAAAGAAATTGTCCCAATGGATCGAGTATAATTCAATTGGTTATCACGTTATATCTTCAACTAAAAGTTTGTAGATGTTGAGGATTGTTGAGAGAAAGTCCCGCTTGGCGCACAACCATGAGAGCTTATGCTCAAAGTAGACAATATCATACCATTGTGGAGGTCCATAGTTTCTAACATGGTATTAGAGTCATGCCCTTAACTTAGCAATGTCAATAGAATCCTAAGTGTCGAACAAAGAAGTTGTGAGTCTTGAATGTGTAGTCAAAAGTGATTGAAGTGTCAAACAAAATGTATAATTTGTTCGAGGGCTCCAGAGAGGAGTCGAGCCTCGATTAAGAGGAGGCTATTCGAGGGCTCCATAGACCTCAGGGGAGATTCTATGATGTACTTCCTTCAAGGGAAGGATCGTTGAAAATGGTTGGGAGCTAGTTAAGGAAATGATCCTAGGTTTATAAGTAAGGAATATATCTTGGTATGAAGTTTCTTGGTAAAACCAAAAGCAAAGCCATGAGAGCTCAAAGTAGACAAATATTATACCACTGTGGAGGTCCGTGGTTCCTAACAAGAGATTCAAATAGGTTGGATAACAACATAAAAATCTGCTAAATTGTTCATTCCTTTGTGATCTTCTGAATGAATTATTTGCCATCATTTGTCTTATCTCAAAAATTTGTCTCAAATTTGATAAGATAGAGTTCTTATTGCATAAACAATACCCACTTGGAACATTTGGTTTCTGGTCAGCTGTTAATTGGATCGGAATATGTTGATGGTTGTCTCCTCTGGTGCATAGAACCGCCCGGGAGTCACCCACATTTGCAACCACCAAATGCTCTCCCTGATGATCAAAAGGGTCAAGATAATGAAGAATGGCTTTTCATTTTCCTAGAAAATTTGAGACAGAGGATGTTATTTTCCGGGAAAGTTTTGAAGTAATCACCTGTTTGATAATGGACATGGCTGTTGTTCCACTGCAGAAACAATCAATAGATGAATCAAAGCCGAGGTCTCGATCAAAATCCGTATAAGCTTCTTCAAAAGCAGCTTCCCATCTTGAAACCAATGGATTTCGTTGATTTCCTTCCTTGTTGTTTGGTTGAACAGAAGCTTTAGAAACCCCATTTTGGAGATGTGATGGCTGCTGCTGCTTTTTGATAGCCTTGGAGAGCTTGGAGGGCAGCATGTCTCGTGCATGGCGAGCAACCCTATGACCAAACGGACCATGGCCATCAAAAACTCCAGAAAACACCAAACCTTTCTCCCCTGAGAAATCCTGTAAGTTTCTGATTCAACTCTCTTTGAATACATTCAACACAAAAATCATATCCCAAACAAGATCATTCCAAAATTTTGCTTTTACCTCCCAAACCGTCATTGCATCTTGATTGATTCCTTTTCTTCCTCGTTGAGTATACATTGATATGAACGCAGAGGATCCATGGAGTCGAACGATGGCTCCGTCGTCGCCACGACGAATCTCTGCTCCATCATCTCCCCGGTTGGAATCCCTCTCATCCTTATCATGGGTCATGTACTCTCCTCCTCCTCCTCCATTGATTGAATCTTTTGTGCAGCAGGCTCCCATTTTTGAGACACCCTCCACCAGGGGAATCTCAAAAAGGAATTTGAGCCACCAGAAGAGATCAAATACCCACAAATTTTCTGGGGAAGAATCTGTATTATTAAAGCATGGAAAGATCGGAGGGTTCTCTGAATCTGAACCCAAAGGGAGCAGAAACAGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGAGAGAGAGAATGAAGTGGAAAATGTTGTTAAGATGAGAATGTGGAATGAAATTGAACAAACAGAATTATATTTAGAAAATCATGGATGATGGTGTGTTGTTGACATTTGTGTTTAGTGGGTTAGCTCTTCTTCCAATTCTTGACCTTATTAAGTTGATTTATCTATATGTTTAATTGTTCAAGTTTAAGGTTAATGGTTGCTTAAATAATATTATCGGTTCCTTCGTTATAATGGGATTATTTTAAATTATGGTGTTTCTCATTATCATCCCACCACTACCACAGGAATTCAAAGGAAGATAGTTTAGCGGTAATTAATAGGTATTATTAGTGTAACAGGCGTCCTTATGATTTTTAAGTCCGTTCAGATTTGTAATTAGTTTCACATCTTGATCATAGATAGACTACTTAACTTCGAGTTTATAAACCGTGACAAATTTTTCATGAATAGACACTTAGGTTCAAGTCTATAAGTCGTGACACTTAGGTTCAAGTCTATAAGTCGTGACAATTTTCCCATAAAAACTCTACGATCCTATATCGGTTGGGAGGAAAACGAAGTATTCTTTATAAGGGTGTAGAAACCTCAGAAACCTCTCTTAGGAAAACGAAGTATTCTTTATAAGGGTGTAGAAACCTCAGAAACCTCTCTTGTATGGGCGTAGAAACTTTAGAAAGAAACCTCCGGATGTAGAAACCTCCCTTATAAGGGCGTAGAAACTTCAAAAAAAAAAAAACCTCCTTTGTAGGGGTAGAAACCTCAACAACCAACCTCCATTATAAGGGCGTAGAAACTTCAGAAACCTCCCTTAACAGAGGCATTTTAAAAGTCACCCGTAAGAGAAAATCCAAAGAGAATAATATAATATGTTACAATTAGACTTCCCTTATAAACTTTTTTTTTCTTTTTTTTTTTTAGTAAAAAAGAAAACCTATAAGCTTATGAATTTTTTTCTAAAAAAGTCCAAATATCTAATAGACTTCTAAATTATTAATTTTATATCTAATGAATTTATGAAAGTTTCTAAACTTTCATTTTTGCATAAAGTTCAAGGACGTGATTAGGTCCATGATCGATTGAGTAGTTTGCTCCTGATTTTTCTCCTTATTTTGTTTGACCTCTTGTCTAAGTACCCAATTTCATATTCCTGAAATATGGGGTATGCTACTCACAAGAGAATCGGGTCAATCGAGTGCTGATTTTGTGTCTGCTACTTAGTCTTAAGTTTAGTTAGTATCTGGTAACTTCGCCTAACTAGAACTTCTTTCTTTCCCTTCGAACATCACTATCTGCTTATTTGAAATCCGAACCCCTGCCATTAGAAATTGGTCCTCTGGCATTTAACAATAACTTAATACTTACCTGTTGTAATGTTAGTTTTATCAGTTGACAAGTCAAAAAAAATAAATATCCAAACAACCAATTTTCCATTCGAAATATAAATAGATAATGGGCAACAGATGCAGGCCAAGCACTTGAGATATCATCATTCCTGGCTCGAATTGGACTAATCCAAGCATTCATACTCAGCCAGACTTTCCAACTCAAAAATAAAACAATTCTATAATCTATGAAACGTATCCTGTTTCGAACAAGCTCCATTTCAATGGCTACAGCTGAAGAAGAAGAAGAAGACATGATTTTCAGTTTCATAGAAGACACAGAATGTTTATACACCAACAAGGAGATGTGTAAAATCAGCCAACTTTTGGATTTGCAGAGCTTAAACAATGTGATTCTAGGAAATAATCATGTTAATGAGATATGGTTTCAAAAGAATGTTATTCAAAAAGAAAGAATGTATTGTGTTTGTTGTTACCACCATTGATGAACCAGAACTCCACTTTGTCTGAGAGAAGAAACCAACTCTATGCATTGAGAATATGTTTTCTCATACTTTGTACTCCTTTGTCCTGGGCAACACCTCTGCCATCTATTGTAATGGCATTCAAGAAACATCTCATCTATCAAACAGATCGCTCCCGTCTCGAAGAGTTTCGGAATCAATTCGAACTCAGTTCCTTCCACGTCCATCTTCAACACCACGAAATCCTTCTCTGATACTGTGTTCTTCAACCAGTTGGCGAAATCAAACCCTTGAATCTGATTAACCTCTCCATCGAAACGACCCAAAGATCGGACAGGTTGAATCCTGCCCATTCCTCTGGTCCCTTTCTCCTCCTTTTCCTTACCTGGGTCTTTGTTGATCTCAAAGGATAATGTCTCATTCCTTACCCAAGCAGCATAAGGCAACAATGTCACCCCTTTCTTTGAACTATACTGTTCATGAAATGTTTGATCAGCTTCAATGGCATAAACTTCAAAGGTTTTGTTCTGCTTTGGATATTGCTTCTTGAACCAACTCCCAATACTGGAGCCATAGCTTCTAGCTCCAACATCCACATAGACATACCTATGTTTGAAGCTTATTTCAGCCATGGAAGGCAAATACTTAATGTTCTGTATATTTCTCTTTAAGGTTAACCATGGCTTCAATGGCTCCTCTAGAATCAGGGGCTCAGCATTTCGAACCAGAGATAGCTTAA

mRNA sequence

AAACGAACAAACCAACAAAAGAAAATAAGATCCTTAGTTCTTCTTCTTCTTGCCCTTCGCCATTGCAGTGCCGCTTTCGCGAGCTTCAATTTCATAGAAAAACTTGGGCGCTTTCTGATTGTGGCTCAAACTCCTAGTGGTTCGTGAAATCCCCATCATTGAATTCACTCTGTTTAATACTTTTACACCCTTCCGATCTTCCTTTGATTCTCTATTCACTGATTCACCTTCTTCTTCTCCTATTTTTCTGTCGATCCCCATGGATCTACAGCTTCTTGAAAATGCCAGTTCCGGATGGCTTCTCATGCTCCGCCGCCCTACGTTCGTCATTGATTTGCTCAGCAATGGTGGATTCTTGAAGAACAAGCAAATCACTGTACAGTCGTCGATCGTCAACCCTATAAATTTGCGTTTCCATTCTCGTGCTGCTAGTTTCACTACTAATTTCGCCGCCATGGATCGGTTCTTTGCTGAAGCAACTATGTTGATTACTTGCTTGTTCGTCAGTACATCCCAGATCTGCGAGTTCGTGGCGACTTCAGGGGTTGGGATGAGGCCAGGATCCATGGAGTCGAACGATGGCTCCGTCGTCGCCACGACGAATCTCTGCTCCATCATCTCCCCGGCTCCCATTTTTGAGACACCCTCCACCAGGGGAATCTCAAAAAGGAATTTGAGCCACCAGAAGAGATCAAATACCCACAAATTTTCTGGGGAAGAATCTGTATTATTAAAGCATGGAAAGATCGGAGGGTTCTCTGAATCTGAACCCAAAGGGAGCAGAAACAGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGAGAGAGAGAATGAAGTGGAAAATGTTAACCATGGCTTCAATGGCTCCTCTAGAATCAGGGGCTCAGCATTTCGAACCAGAGATAGCTTAA

Coding sequence (CDS)

ATGGATCTACAGCTTCTTGAAAATGCCAGTTCCGGATGGCTTCTCATGCTCCGCCGCCCTACGTTCGTCATTGATTTGCTCAGCAATGGTGGATTCTTGAAGAACAAGCAAATCACTGTACAGTCGTCGATCGTCAACCCTATAAATTTGCGTTTCCATTCTCGTGCTGCTAGTTTCACTACTAATTTCGCCGCCATGGATCGGTTCTTTGCTGAAGCAACTATGTTGATTACTTGCTTGTTCGTCAGTACATCCCAGATCTGCGAGTTCGTGGCGACTTCAGGGGTTGGGATGAGGCCAGGATCCATGGAGTCGAACGATGGCTCCGTCGTCGCCACGACGAATCTCTGCTCCATCATCTCCCCGGCTCCCATTTTTGAGACACCCTCCACCAGGGGAATCTCAAAAAGGAATTTGAGCCACCAGAAGAGATCAAATACCCACAAATTTTCTGGGGAAGAATCTGTATTATTAAAGCATGGAAAGATCGGAGGGTTCTCTGAATCTGAACCCAAAGGGAGCAGAAACAGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGAGAGAGAGAATGAAGTGGAAAATGTTAACCATGGCTTCAATGGCTCCTCTAGAATCAGGGGCTCAGCATTTCGAACCAGAGATAGCTTAA

Protein sequence

MDLQLLENASSGWLLMLRRPTFVIDLLSNGGFLKNKQITVQSSIVNPINLRFHSRAASFTTNFAAMDRFFAEATMLITCLFVSTSQICEFVATSGVGMRPGSMESNDGSVVATTNLCSIISPAPIFETPSTRGISKRNLSHQKRSNTHKFSGEESVLLKHGKIGGFSESEPKGSRNREERRGEERRGERERMKWKMLTMASMAPLESGAQHFEPEIA

Homology

[Close]

BLAST of Cp4.1LG19g01310 vs. NCBI nr
Match: XP_022925086.1 (uncharacterized protein LOC111432437 [Cucurbita moschata])

HSP 1 Score: 194 bits (493), Expect = 2.58e-60
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MDLQLLENASSGWLLMLRRPTFVIDLLSNGGFLKNKQITVQSSIVNPINLRFHSRAASFT 60
           MDLQLLE ASSGWLLMLRRPTFVIDLLSNGGFLKNKQITVQSSIVNPINLRFHSRAASFT
Sbjct: 1   MDLQLLETASSGWLLMLRRPTFVIDLLSNGGFLKNKQITVQSSIVNPINLRFHSRAASFT 60

Query: 61  TNFAAMDRFFAEATMLITCLFVSTSQICEFVATSGVGMRP 100
           TNFAAMDRFFAEATMLITCLFVSTSQICEFVATSGVGMRP
Sbjct: 61  TNFAAMDRFFAEATMLITCLFVSTSQICEFVATSGVGMRP 100

[Close]

BLAST of Cp4.1LG19g01310 vs. NCBI nr
Match: KAG7027554.1 (hypothetical protein SDJN02_11568, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 195 bits (495), Expect = 5.45e-60
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MDLQLLENASSGWLLMLRRPTFVIDLLSNGGFLKNKQITVQSSIVNPINLRFHSRAASFT 60
           MDLQLLENASSGWLLMLRRPTFVIDLLSNGGFLKNKQITVQSSIVNPIN RFHSRAASFT
Sbjct: 1   MDLQLLENASSGWLLMLRRPTFVIDLLSNGGFLKNKQITVQSSIVNPINFRFHSRAASFT 60

Query: 61  TNFAAMDRFFAEATMLITCLFVSTSQICEFVATSGVGMRP 100
           TNFAAMDRFFAEATMLITCLFVSTSQICEFVATSGVGMRP
Sbjct: 61  TNFAAMDRFFAEATMLITCLFVSTSQICEFVATSGVGMRP 100

[Close]

BLAST of Cp4.1LG19g01310 vs. NCBI nr
Match: KAG6570992.1 (hypothetical protein SDJN03_29907, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.9 bits (141), Expect = 1.64e-07
Identity = 28/46 (60.87%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 7  ENASSGWLLMLRRPTFVIDLLSNGGFLKNKQITVQSSIVNPINLRF 52
          E A+SGWLL  RRPT VID ++ GGFLK   IT QSSI++P N  F
Sbjct: 50 ETANSGWLLTFRRPTLVIDFINIGGFLKKHAITAQSSIIDPGNSSF 95

[Close]

BLAST of Cp4.1LG19g01310 vs. ExPASy TrEMBL
Match: A0A6J1EB82 (uncharacterized protein LOC111432437 OS=Cucurbita moschata OX=3662 GN=LOC111432437 PE=4 SV=1)

HSP 1 Score: 194 bits (493), Expect = 1.25e-60
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MDLQLLENASSGWLLMLRRPTFVIDLLSNGGFLKNKQITVQSSIVNPINLRFHSRAASFT 60
           MDLQLLE ASSGWLLMLRRPTFVIDLLSNGGFLKNKQITVQSSIVNPINLRFHSRAASFT
Sbjct: 1   MDLQLLETASSGWLLMLRRPTFVIDLLSNGGFLKNKQITVQSSIVNPINLRFHSRAASFT 60

Query: 61  TNFAAMDRFFAEATMLITCLFVSTSQICEFVATSGVGMRP 100
           TNFAAMDRFFAEATMLITCLFVSTSQICEFVATSGVGMRP
Sbjct: 61  TNFAAMDRFFAEATMLITCLFVSTSQICEFVATSGVGMRP 100

The following BLAST results are available for this feature:

BLAST of Cp4.1LG19g01310 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG19g01310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022925086.1	2.58e-60	99.00	uncharacterized protein LOC111432437 [Cucurbita moschata]	[more]
KAG7027554.1	5.45e-60	99.00	hypothetical protein SDJN02_11568, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6570992.1	1.64e-07	60.87	hypothetical protein SDJN03_29907, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Cp4.1LG19g01310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EB82	1.25e-60	99.00	uncharacterized protein LOC111432437 OS=Cucurbita moschata OX=3662 GN=LOC1114324...	[more]

BLAST of Cp4.1LG19g01310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..193
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..193

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG19g01310.1	Cp4.1LG19g01310.1	mRNA