Cp4.1LG18g09040 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGACTTGAAATCTGTTGGGCTTCGCCCGCGCAGGTTCGAACCCTGCTGTCGACGATTATTTTTAATTTCATTTGTTTCATTTATTTATTTCTTTTTTTTGGCCTTCTCGATTTCAATTTACCGATGAGGGTTAGGGTTTCATGTGAACATCAGAAGTGTGATTGAAAGTTGGAATTGGGATTTTGGTTGATTCCGAAGGCTCTCTTAACGAATTCGGTGGATTTTCGGTTGGCGTAGCAGCACAAAAGCATCTGTTTTTCTTGTTCTGGAAAAATTTGATGGAAGAGAAACCCACTAATGTTTTGTCTCTTCCCCAGACAACTCAAGAGCTTGCAATGGAGGGCATCAAGCATCTTGAGGAAACGATAGAATCCGCATTCCAGATCCTATACTCCATGAACGACGAGCTCTGCAATCCCACATTATGGTCCACCACTTCTTCAACGGCAACAACGACTACTTCTGGTTTAACAATTGCCAGCCCAAATGCTCCATCTTCGCATTCCACTAATGGAGTTGTAAACGGCGATGCAAGTTCGGAAAGCACAAACCATCACACCGACACCAGCAGTGGCGGAGGCAGCGGTAGTGGGGGAGCCCTTGAGGAGGCCCGTGTTCGCTACAAGAATTCAGTACTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAATTCTCAGAAGGTAAATTACTGACTGATCTTCCTCTTATTCGTCTTTGTTCGTCAGCCAGCGTTTCTCATTTCTCATTTCATTTCTCATTTGGCAAAATTCGAGATTGATTCGAAGATATTTGGTTCCCCCATGTTACAAAATGCTTTGTGGAGAACATGGAATTTTTGTATTCAATTTCCGCCGAGTGCCTAAAATTCTTCCTGAATTTGATAGATTGCAGATACTACATTCGACCTGGTTTTCATTTTCACCACTGCTGATAGATGCGTGGACTTAATCCATGTCTATGAATTTGATAGATTGCTAAACTGCATTGACTTGTTGTTCACTTATGCCGATTAAGCGACTTAAATCAGAGTTTCATGGTTTATTGATAGGCAAAAGCACATGAATCGGGTACAAGCGGTCATGCATCGCCTGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGTATTCTATTGTATCTTCAGCTTGTAAATTCATGTCAGTAATTTATTTTTTCTTCAAGACACTTAGGATTACAACCACTTAGAATTTTCTGGCAAAGATTTCGTTTGGGAACCAAATATATCTGGAAATAATTTACTTATATAAGACTTCGGAGGTAAATATACAGTAAAATTTACTAAAATATGTACAAATATTGATGAAACTGAGAAGGTCTTATAGATTTCAAGACAACAGTTCTGTTTGTCTTATTGTTTGTTGTATATCAGAATTAATCTAAGGAAAGATTTTGAAACTAAATAGACAATGAGAAAATCAAATATTGAAACTAATAACGTTATGGAGGATATGTCATGGATATTATAGGTAATATGCTTCTTCCTAGAAATGACATCTTCTTTTTCTTTCAACTGCTATTATAAGGGTCCTATCTGCGGTGTGTTTGCAGGAACTCATGGTTAAGAACTTGCATATAAAGCTTCTGATAGATCAACTACGAGAACTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTATGAAAAACATATCTAGCCTTGAGTCTCCTCACTAATCTAGCTGTCGTAATTTGAAAATGTCGTGCTCTGTTGCTTTATAACATGAGTTGTTATTAGAACGTTTCTTTATATAATCTCTTCAATGAAACTGGGATTATAAATTTGCCATTGGCACTAGATTGTTAATATAACTTAAGGCTCTGATAAATCAAGTACCAGGAATAAAAGGTTCAATATTTCCATGAAGCAGAAGAATCCTTATATAAGAAAATTTGTTTACTATTTCAATGAACGATGCTCGTGTGTCGTGATTACCTTAGTTTTTCTTAGAAATCATCTACAGAAACCCATTAAACACTCTTAACACACTTGGATGAACACACAAAAACAACCATATGGTATCAGCGTATGAAACATAGTTACACTTGTTCGCAAGTTCTAAAATCTAGCTCGTCTGGAATAAGAATTTGTGGCCGTGTAGGGGTTTTATACCATCGAAGAAGAATGCATTCAGTTGTGCATTGAGGATCTTGTAGTAAGGGAAGATCTCATATCCACAATGGCAGATTCATCTGCACCCAACTTGATTGCCTCTTTGCTTGCTCTGATGAACCTCGAAACAGCTCCTCTAGTGTAGTCATGTGCTTCTTTAACCGTCATCTTCTCGCTTATTTCATTAGGGAAGCTGCTTAGGAAATGATCACCATTTAGAACAGCAGCTAACTGTACAACCTCGCTCTGAAACTCGGAAAGTCTACTGTTTTCGTTAGCTTCTGTTTTCCTCAACGGTGTCACTTCGGGCAAGGTT AGACTTGAAATCTGTTGGGCTTCGCCCGCGCAGGTTCGAACCCTGCTGTCGACGATTATTTTTAATTTCATTTGTTTCATTTATTTATTTCTTTTTTTTGGCCTTCTCGATTTCAATTTACCGATGAGGGTTAGGGTTTCATGTGAACATCAGAAGTGTGATTGAAAGTTGGAATTGGGATTTTGGTTGATTCCGAAGGCTCTCTTAACGAATTCGGTGGATTTTCGGTTGGCGTAGCAGCACAAAAGCATCTGTTTTTCTTGTTCTGGAAAAATTTGATGGAAGAGAAACCCACTAATGTTTTGTCTCTTCCCCAGACAACTCAAGAGCTTGCAATGGAGGGCATCAAGCATCTTGAGGAAACGATAGAATCCGCATTCCAGATCCTATACTCCATGAACGACGAGCTCTGCAATCCCACATTATGGTCCACCACTTCTTCAACGGCAACAACGACTACTTCTGGTTTAACAATTGCCAGCCCAAATGCTCCATCTTCGCATTCCACTAATGGAGTTGTAAACGGCGATGCAAGTTCGGAAAGCACAAACCATCACACCGACACCAGCAGTGGCGGAGGCAGCGGTAGTGGGGGAGCCCTTGAGGAGGCCCGTGTTCGCTACAAGAATTCAGTACTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAATTCTCAGAAGGCAAAAGCACATGAATCGGGTACAAGCGGTCATGCATCGCCTGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGAACTCATGGTTAAGAACTTGCATATAAAGCTTCTGATAGATCAACTACGAGAACTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTATGAAAAACATATCTAGCCTTGAGTCTCCTCACTAATCTAGCTGTCGTAATTTGAAAATGTCGTGCTCTGTTGCTTTATAACATGAGTTGTTATTAGAACGTTTCTTTATATAATCTCTTCAATGAAACTGGGATTATAAATTTGCCATTGGCACTAGATTGTTAATATAACTTAAGGCTCTGATAAATCAAGTACCAGGAATAAAAGGTTCAATATTTCCATGAAGCAGAAGAATCCTTATATAAGAAAATTTGTTTACTATTTCAATGAACGATGCTCGTGTGTCGTGATTACCTTAGTTTTTCTTAGAAATCATCTACAGAAACCCATTAAACACTCTTAACACACTTGGATGAACACACAAAAACAACCATATGGTATCAGCGTATGAAACATAGTTACACTTGTTCGCAAGTTCTAAAATCTAGCTCGTCTGGAATAAGAATTTGTGGCCGTGTAGGGGTTTTATACCATCGAAGAAGAATGCATTCAGTTGTGCATTGAGGATCTTGTAGTAAGGGAAGATCTCATATCCACAATGGCAGATTCATCTGCACCCAACTTGATTGCCTCTTTGCTTGCTCTGATGAACCTCGAAACAGCTCCTCTAGTGTAGTCATGTGCTTCTTTAACCGTCATCTTCTCGCTTATTTCATTAGGGAAGCTGCTTAGGAAATGATCACCATTTAGAACAGCAGCTAACTGTACAACCTCGCTCTGAAACTCGGAAAGTCTACTGTTTTCGTTAGCTTCTGTTTTCCTCAACGGTGTCACTTCGGGCAAGGTT ATGGAAGAGAAACCCACTAATGTTTTGTCTCTTCCCCAGACAACTCAAGAGCTTGCAATGGAGGGCATCAAGCATCTTGAGGAAACGATAGAATCCGCATTCCAGATCCTATACTCCATGAACGACGAGCTCTGCAATCCCACATTATGGTCCACCACTTCTTCAACGGCAACAACGACTACTTCTGGTTTAACAATTGCCAGCCCAAATGCTCCATCTTCGCATTCCACTAATGGAGTTGTAAACGGCGATGCAAGTTCGGAAAGCACAAACCATCACACCGACACCAGCAGTGGCGGAGGCAGCGGTAGTGGGGGAGCCCTTGAGGAGGCCCGTGTTCGCTACAAGAATTCAGTACTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAATTCTCAGAAGGCAAAAGCACATGAATCGGGTACAAGCGGTCATGCATCGCCTGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGAACTCATGGTTAAGAACTTGCATATAAAGCTTCTGATAGATCAACTACGAGAACTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTATGA MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTTTSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLIDQLRELVADVSTWQSPCSV Homology
BLAST of Cp4.1LG18g09040 vs. ExPASy Swiss-Prot
Match: Q9FMV4 (Mediator of RNA polymerase II transcription subunit 30 OS=Arabidopsis thaliana OX=3702 GN=MED30 PE=1 SV=1) HSP 1 Score: 177.9 bits (450), Expect = 1.1e-43 Identity = 107/190 (56.32%), Postives = 139/190 (73.16%), Query Frame = 0
BLAST of Cp4.1LG18g09040 vs. NCBI nr
Match: XP_022921424.1 (mediator of RNA polymerase II transcription subunit 30 [Cucurbita moschata] >XP_022987135.1 mediator of RNA polymerase II transcription subunit 30 [Cucurbita maxima] >XP_023515464.1 mediator of RNA polymerase II transcription subunit 30 [Cucurbita pepo subsp. pepo] >KAG6589379.1 Mediator of RNA polymerase II transcription subunit 30, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023058.1 Mediator of RNA polymerase II transcription subunit 30 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 369 bits (948), Expect = 1.75e-128 Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0
BLAST of Cp4.1LG18g09040 vs. NCBI nr
Match: XP_004138044.1 (mediator of RNA polymerase II transcription subunit 30 [Cucumis sativus] >KGN63478.1 hypothetical protein Csa_013518 [Cucumis sativus]) HSP 1 Score: 348 bits (892), Expect = 6.02e-120 Identity = 186/198 (93.94%), Postives = 193/198 (97.47%), Query Frame = 0
BLAST of Cp4.1LG18g09040 vs. NCBI nr
Match: XP_008464424.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis melo] >KAA0057767.1 mediator of RNA polymerase II transcription subunit 30 [Cucumis melo var. makuwa] >TYJ98448.1 mediator of RNA polymerase II transcription subunit 30 [Cucumis melo var. makuwa]) HSP 1 Score: 347 bits (889), Expect = 1.72e-119 Identity = 186/198 (93.94%), Postives = 192/198 (96.97%), Query Frame = 0
BLAST of Cp4.1LG18g09040 vs. NCBI nr
Match: XP_038879540.1 (mediator of RNA polymerase II transcription subunit 30 [Benincasa hispida]) HSP 1 Score: 337 bits (864), Expect = 1.08e-115 Identity = 183/198 (92.42%), Postives = 190/198 (95.96%), Query Frame = 0
BLAST of Cp4.1LG18g09040 vs. NCBI nr
Match: XP_022134927.1 (mediator of RNA polymerase II transcription subunit 30 [Momordica charantia]) HSP 1 Score: 326 bits (836), Expect = 1.85e-111 Identity = 174/198 (87.88%), Postives = 187/198 (94.44%), Query Frame = 0
BLAST of Cp4.1LG18g09040 vs. ExPASy TrEMBL
Match: A0A6J1JFZ2 (mediator of RNA polymerase II transcription subunit 30 OS=Cucurbita maxima OX=3661 GN=LOC111484777 PE=4 SV=1) HSP 1 Score: 369 bits (948), Expect = 8.48e-129 Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0
BLAST of Cp4.1LG18g09040 vs. ExPASy TrEMBL
Match: A0A6J1E0F5 (mediator of RNA polymerase II transcription subunit 30 OS=Cucurbita moschata OX=3662 GN=LOC111429707 PE=4 SV=1) HSP 1 Score: 369 bits (948), Expect = 8.48e-129 Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0
BLAST of Cp4.1LG18g09040 vs. ExPASy TrEMBL
Match: A0A0A0LNW4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001500 PE=4 SV=1) HSP 1 Score: 348 bits (892), Expect = 2.91e-120 Identity = 186/198 (93.94%), Postives = 193/198 (97.47%), Query Frame = 0
BLAST of Cp4.1LG18g09040 vs. ExPASy TrEMBL
Match: A0A5A7USU3 (Mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00490 PE=4 SV=1) HSP 1 Score: 347 bits (889), Expect = 8.35e-120 Identity = 186/198 (93.94%), Postives = 192/198 (96.97%), Query Frame = 0
BLAST of Cp4.1LG18g09040 vs. ExPASy TrEMBL
Match: A0A1S3CMZ7 (mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo OX=3656 GN=LOC103502315 PE=4 SV=1) HSP 1 Score: 347 bits (889), Expect = 8.35e-120 Identity = 186/198 (93.94%), Postives = 192/198 (96.97%), Query Frame = 0
BLAST of Cp4.1LG18g09040 vs. TAIR 10
Match: AT5G63480.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 177.9 bits (450), Expect = 7.8e-45 Identity = 107/190 (56.32%), Postives = 139/190 (73.16%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|