Cp4.1LG18g07080 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG18g07080
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	glycine-rich RNA-binding protein 3, mitochondrial-like
Location	Cp4.1LG18: 6979569 .. 6982528 (-)
RNA-Seq Expression	Cp4.1LG18g07080
Synteny	Cp4.1LG18g07080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CACTTCTCATATTCGTTAAAAACCCCGGCTGTTCGTAAGTCATCCTAGGGTTTTAGCATCGCAACGAGAGAGAAGAAGGACAAGGTTCGTTCTCTAATTACCCGATCTTCTCTGTCTGTGATTTTCCATTACATGTTCTTTTGCCTTCTGTATATGCTTTGATGTTTGAATTGCTTCCGAAATCGTTGAAAATGTTCGTATCAAGTGTGTTGGACTTTTGATTGATGATCTCTTACTATCCTCCGAGTTATTTTTCCGGTGTATTAGATTTAGGAACTGGAAGAAATGATAGCCGCAAATAGGCGATGAGTCTTGTCTCTTTCTCGTGTTACGTATTCGAGCTTTTCATCACGGCCTCTTTTTCGTTCGCGTCTTGTTTTGGTTACTGACTTTTATTTTATATCTCAACATGTTATGGTATGCGAACGAGTCTTGGTGGTAAGGATCATATTGTTGAGTTTGAAATGTTCTTATCAACCACCAAATCGAGCTTATGCACGTTGGCGCTTAAAGGGATACTTATGAACGTTATTACGTACACAAGTGCCGCATTTCACTCCTTGCGAGTGTTCTATTTTTTACCTTCTCCTGTTCAGTTGTTTTGTAGTATGTTCTGGTGATGAGTTTGTGAAGTGTGTTGCGACAGTGCTCTGTGTACTCTAATTTGTCGAAAATCAAAGTGGAACATAATTTTAGGCTAACGGAAAAGCTTTCATTGCTGCCTCTGATGTTGAATCTTCGCCACTAATCTCTTTCAGGGTGCTTCAAAATGGCTTTCCTAAGTAAGGTTGGAAATATACTGAGGCAGGGTGCAAATAAGAGGACTGGATTAAATTTGCAGGCGCCCAGCTTGTCTATCTTTCAAGCTGTACGATGGATGTCTTCAATGCAGAGTTCAAAAGTTTTTGTCGGAGGTTCTATGTGATTNGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGTTAAGAACATGTAAACGCCAATTTCTTTTTCTTTATCTCGTATTCATATGCATGTTTATGATGACAGGTATTTCATACAACACTGATGATCAAAGTCTGAGGGAAGCCTTTACTAAATACGGGGAAGTTATTGAAGGTATATCGCCATTCAACTGACTCATTTACAAGTTAAGTGTTGAAAACTATCTTAGAAGTATGTTCCCAATTACTATCATACCTTTACGCAACAAAATTGATATATTTAATAAACGCACTTTAGGAGACCAGAATCTGCCTGAGGAATTCTGTCCCTTTCAAATATTTTCTGAAATTATGGCCGAGCAGGTGGCCTTGGGGAGGGGTGGAACTAGTGGATAGTGTCAAATCTGAAGTTTAGTAAAAATGTTGGTTTCCTTGTTTACCCTTCTTTTCTTTGCCCCCGTGATAGCTAGGGTCATTGTAGACCGCGAAACTGGAAGATCCAGAGGATTTGGATTTGTGACTTACACCTCTAGCGAGGAGGCCTCTAGTGCCATCCAGGCACTGGATGGACAGGTAATGATTATGCTGTCAGCTTATTGTGATTAAAAAGGATAAAACATCATGTTATATTCATATGCCATAGTATACTATTGAGTTAATGCATCTCCGGATATAAAATGCTTCATGTCATTTGTCTGCTTTATTTCCTGTTTGACGATCGTGTCACTGTGTCAGTTGCATGAAGATTGTATCTTATGAATGCATTATGAGAGCTTGAAATTGCGGAGATATTAAAGCTAATAGCAGAGGCCATTCTCTATAATATTCTCAACAATTAAATTGTGTACTAATGTGAAGTGTTCTAGGAGCTGTAACGTTGATTGGTTATTTATTCTCAAGTACATATATATATATATATATATATATATATATATATATATATATATATATATATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATATTTCTGAATGTTGTGTGATTAAGGCGAGTTGTATATTGGAGACTTATTGGCAGTCACTCCTCGTTCATGTTTTGGCACAGCTGTTCCTCTTTTATATTATCAAGGAAGCTGGTATCTTATGGTACAAGTTAATTAAAAAAATTTAGGCAAAAAAATAAAAAAAGAGGAAAAAACAACGTTTCAAAGAAAGATGAGTGATTATGTTGATTGTAATTTGGAGGCTTGTTCCATCTCCAAATCTATGAGAATGAATCAAATTTGAAATTAACTGACTAATTAATGGAGATGCAAGTTTTTAGTTGATTTGTATTGGTACTCAGTATTTGCTAAACACAAGATGTTTAATGGCTTAGTTGAATTATTGTTCACTTTTTCCCTTTCAAACAGGACCTTCATGGTCGTCGTGTGAGAGTGAATTATGCTAATGATAGAAGTCGTGGTATGGGTGGTGGCGGCTATGGTGGCGGTGGTGGTGGCTATGGTGGCGGTGGCGGTGGATATGGTGGTGGCAGCTATGGTGGCGGCGGCGGTAGCTATGGTGGTGGCGGCGGTAGCTATGGTGGTGGGGCTTATGGCGGTGGTGGGGCTTATGGCGGTGGTGGCTCTGGTGGTGGAGGCTATGGCGGTGAGAGTGGAGGAGGTTTTGGGTCAGTATTTAGTGCTGGAGACAACTATTCAAGCAGTTTTGGCAGTGGTAGCCAAGGAAGCGGAGGAAATTATGGTACAGGTGGGAATGATGCTGGCTCCAACGCTGCTAGCAATTTTGCTAGTGGAAACACATTCGGCAGTGGAACTAGCGCTGGTTTTGATACCAATGTCAGCAACGGTGGTGGCGACTATTTTGCCAACAGTGGGTCTGATGCAAGCTCTGGGTTTGGAGGATACACTGGCGGGGATCAATTTGGCAGCAACGAAGCAGACACCCTGAATGCATCCGGAGATCAAGGCCTAGGGGAGCAACTGGAAGGAAATGATAGGGATGAAGATGACAACGCAGACGACTTCGCTAAAAGAGCC

mRNA sequence

CACTTCTCATATTCGTTAAAAACCCCGGCTGTTCGTAAGTCATCCTAGGGTTTTAGCATCGCAACGAGAGAGAAGAAGGACAAGGGTGCTTCAAAATGGCTTTCCTAAGTAAGGTTGGAAATATACTGAGGCAGGGTGCAAATAAGAGGACTGGATTAAATTTGCAGGCGCCCAGCTTGTCTATCTTTCAAGCTGTACGATGGATGTCTTCAATGCAGAGTTCAAAAGTTTTTGTCGGAGGTATTTCATACAACACTGATGATCAAAGTCTGAGGGAAGCCTTTACTAAATACGGGGAAGTTATTGAAGCTAGGGTCATTGTAGACCGCGAAACTGGAAGATCCAGAGGATTTGGATTTGTGACTTACACCTCTAGCGAGGAGGCCTCTAGTGGGAATGATGCTGGCTCCAACGCTGCTAGCAATTTTGCTAGTGGAAACACATTCGGCAGTGGAACTAGCGCTGGTTTTGATACCAATGTCAGCAACGGTGGTGGCGACTATTTTGCCAACAGTGGGTCTGATGCAAGCTCTGGGTTTGGAGGATACACTGGCGGGGATCAATTTGGCAGCAACGAAGCAGACACCCTGAATGCATCCGGAGATCAAGGCCTAGGGGAGCAACTGGAAGGAAATGATAGGGATGAAGATGACAACGCAGACGACTTCGCTAAAAGAGCC

Coding sequence (CDS)

ATGGCTTTCCTAAGTAAGGTTGGAAATATACTGAGGCAGGGTGCAAATAAGAGGACTGGATTAAATTTGCAGGCGCCCAGCTTGTCTATCTTTCAAGCTGTACGATGGATGTCTTCAATGCAGAGTTCAAAAGTTTTTGTCGGAGGTATTTCATACAACACTGATGATCAAAGTCTGAGGGAAGCCTTTACTAAATACGGGGAAGTTATTGAAGCTAGGGTCATTGTAGACCGCGAAACTGGAAGATCCAGAGGATTTGGATTTGTGACTTACACCTCTAGCGAGGAGGCCTCTAGTGGGAATGATGCTGGCTCCAACGCTGCTAGCAATTTTGCTAGTGGAAACACATTCGGCAGTGGAACTAGCGCTGGTTTTGATACCAATGTCAGCAACGGTGGTGGCGACTATTTTGCCAACAGTGGGTCTGATGCAAGCTCTGGGTTTGGAGGATACACTGGCGGGGATCAATTTGGCAGCAACGAAGCAGACACCCTGAATGCATCCGGAGATCAAGGCCTAGGGGAGCAACTGGAAGGAAATGATAGGGATGAAGATGACAACGCAGACGACTTCGCTAAAAGAGCC

Protein sequence

MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFVGGISYNTDDQSLREAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSGNDAGSNAASNFASGNTFGSGTSAGFDTNVSNGGGDYFANSGSDASSGFGGYTGGDQFGSNEADTLNASGDQGLGEQLEGNDRDEDDNADDFAKRA

Homology

[Close]

BLAST of Cp4.1LG18g07080 vs. ExPASy Swiss-Prot
Match: Q9FNR1 (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 8.3e-28
Identity = 91/197 (46.19%), Postives = 111/197 (56.35%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFVGGISYNTDDQSLR 60
           MAFLSK GNIL+Q  NK+    +   S S+FQA+R MS   SSK+F+GG++Y+ D+ SLR
Sbjct: 1   MAFLSKFGNILKQTTNKQLNAQVSLSSPSLFQAIRCMS---SSKLFIGGMAYSMDEDSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASS-----------GNDAGSNAAS 120
           EAFTKYGEV++ RVI+DRETGRSRGFGFVT+TSSE ASS           G     N A+
Sbjct: 61  EAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYAN 120

Query: 121 NFASGNTFGSGTSAGFDTNVSNGGGDYFANSGSDASSGFGGYTG------GDQFGSNEAD 180
           +  SG  FG G   G        GG      G   S G+GG  G      G  +G N A 
Sbjct: 121 DRTSGGGFGGGGYGGGGGGYGGSGGYGGGAGGYGGSGGYGGGAGGYGGNSGGGYGGNAAG 180

[Close]

BLAST of Cp4.1LG18g07080 vs. ExPASy Swiss-Prot
Match: Q9C909 (Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG5 PE=1 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.0e-22
Identity = 86/182 (47.25%), Postives = 111/182 (60.99%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFVGGISYNTDDQSLR 60
           MAFLSKVG +  Q ++  T       S S+ Q++R MS   SSK+FVGGISY+TD+  LR
Sbjct: 1   MAFLSKVGRLFSQTSSHVTA------SSSMLQSIRCMS---SSKIFVGGISYSTDEFGLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASS-----GNDA-GSNAASNFASG 120
           EAF+KYGEV++A++IVDRETGRSRGF FVT+TS+EEAS+     G D  G     N+A+ 
Sbjct: 61  EAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQLDGQDLHGRRIRVNYATE 120

Query: 121 NTFGSGTSAGFDTNVSNGGGDYFANSG--SDASSGFGGYTGGDQFGSNEADTLNASGDQG 175
              G G   GF       GG Y A+ G     + G+GG  GG  +G N + + NA G  G
Sbjct: 121 RGSGFG-GRGF----GGPGGGYGASDGGYGAPAGGYGGGAGG--YGGNSSYSGNAGGGGG 166

[Close]

BLAST of Cp4.1LG18g07080 vs. ExPASy Swiss-Prot
Match: Q9LIS2 (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG4 PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 9.5e-16
Identity = 62/151 (41.06%), Postives = 82/151 (54.30%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFVGGISYNTDDQSLR 60
           MAF +K+  ILRQG ++ +      P  S+  ++R+M    SSK+FVGG+S+ TDD SL+
Sbjct: 1   MAFCNKLSGILRQGVSQSS----NGPVTSMLGSLRYM----SSKLFVGGLSWGTDDSSLK 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSGNDAGSNAASNFASGNTFGSG 120
           +AFT +GEV EA VI DRETGRSRGFGFV++       S  D+ +NA          G  
Sbjct: 61  QAFTSFGEVTEATVIADRETGRSRGFGFVSF-------SCEDSANNAIKEMDGKELNGRQ 120

Query: 121 TSAGFDTNVSNGGGDYFANSGSDASSGFGGY 152
                 T  S+     F   G     G GGY
Sbjct: 121 IRVNLATERSSAPRSSFGGGGGYGGGGGGGY 136

[Close]

BLAST of Cp4.1LG18g07080 vs. ExPASy Swiss-Prot
Match: Q9SVM8 (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG2 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.4e-14
Identity = 65/170 (38.24%), Postives = 92/170 (54.12%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFVGGISYNTDDQSLR 60
           MAF +K+G +LRQ  +     N   P  S+  ++R M    S+K+F+GG+S+ TDD SLR
Sbjct: 1   MAFCNKLGGLLRQNISS----NGNVPVTSMLGSLRLM----STKLFIGGLSWGTDDASLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEAS-----------SGNDAGSNAAS 120
           +AF  +G+V++A+VIVDRETGRSRGFGFV +     A+           +G     N A+
Sbjct: 61  DAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 120

Query: 121 NFASG-NTFGSGTSAGFDTNVSNGGGDYFANSGSDASSGFGGYTGGDQFG 159
           +  S    +G G   G+     +GGG  +   G     G GGY GG   G
Sbjct: 121 DRPSAPRAYGGG--GGY-----SGGGGGYGGGGGGYGGGGGGYGGGGDGG 155

[Close]

BLAST of Cp4.1LG18g07080 vs. ExPASy Swiss-Prot
Match: Q43472 (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare OX=4513 GN=blt801 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 8.3e-12
Identity = 57/131 (43.51%), Postives = 73/131 (55.73%), Query Frame = 0


Query: 44  KVFVGGISYNTDDQSLREAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSE------EA 103
           + FVGG+ + TDDQSL+ AF+KYG+VI++++I DRETGRSRGFGFVT+ S E      EA
Sbjct: 7   RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66

Query: 104 SSGNDA-GSNAASNFA------SGNTFGSGTSAGFDTNVSNGGGDYFANSGSDASSGFGG 162
            +G D  G N   N A       G  FG G   G+      GGG  +   G     G  G
Sbjct: 67  MNGQDLDGRNITVNEAQSRRSDGGGGFGGG-GGGYGGQRREGGGGGYGGGGGGYGGGRSG 126

[Close]

BLAST of Cp4.1LG18g07080 vs. NCBI nr
Match: XP_023516049.1 (glycine-rich RNA-binding protein 3, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 304 bits (779), Expect = 4.98e-101
Identity = 195/317 (61.51%), Postives = 195/317 (61.51%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFVGGISYNTDDQSLR 60
           MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFVGGISYNTDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFVGGISYNTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASS--------------------- 120
           EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASS                     
Sbjct: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 DRSRGMGGGGYGGGGGGYGGGGGGYGGGSYGGGGGSYGGGGGSYGGGAYGGGGAYGGGGS 180

Query: 181 -----------------------------------------GNDAGSNAASNFASGNTFG 195
                                                    GNDAGSNAASNFASGNTFG
Sbjct: 181 GGGGYGGESGGGFGSVFSAGDNYSSSFGSGSQGSGGNYGTGGNDAGSNAASNFASGNTFG 240

[Close]

BLAST of Cp4.1LG18g07080 vs. NCBI nr
Match: XP_022921902.1 (glycine-rich RNA-binding protein 3, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 299 bits (765), Expect = 6.44e-99
Identity = 191/316 (60.44%), Postives = 194/316 (61.39%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFVGGISYNTDDQSLR 60
           MAFLSKVGNILRQGANKRTGLN QAPSLSIFQAVRWMSSMQSSKVF+GGISY+TDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRTGLNFQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASS--------------------- 120
           EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASS                     
Sbjct: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 DRSRGMGGGGYGGGGGGYGGGGYGGGGGGYGGGGGGYGGGSYGGGGGSYGGGSYGGGGSG 180

Query: 181 ----------------------------------------GNDAGSNAASNFASGNTFGS 195
                                                   GNDAGSNAASNFASGNTFGS
Sbjct: 181 GGGYGGESGGGFGSGFSAGDNYSSSFGSGSQGSGGNYGTGGNDAGSNAASNFASGNTFGS 240

[Close]

BLAST of Cp4.1LG18g07080 vs. NCBI nr
Match: KAG7023294.1 (Glycine-rich RNA-binding protein 3, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 296 bits (757), Expect = 1.02e-97
Identity = 190/315 (60.32%), Postives = 193/315 (61.27%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFVGGISYNTDDQSLR 60
           MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVF+GGISY+TDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASS--------------------- 120
           EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASS                     
Sbjct: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 DRSRGMGGGGYGGGGGGYGGGGYGGGGGGYGGGGYGGSGSYGGGGGSYGGGAYGGGVSGG 180

Query: 181 ---------------------------------------GNDAGSNAASNFASGNTFGSG 195
                                                  GNDAGSNAASNFASGNTFGSG
Sbjct: 181 GGYGGESGGGFGSGFSAGDNYSSSFGSGSQGSGGNYGTGGNDAGSNAASNFASGNTFGSG 240

[Close]

BLAST of Cp4.1LG18g07080 vs. NCBI nr
Match: KAG6589603.1 (Glycine-rich RNA-binding protein 3, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 293 bits (751), Expect = 1.59e-96
Identity = 190/321 (59.19%), Postives = 193/321 (60.12%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFVGGISYNTDDQSLR 60
           MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVF+GGISY+TDDQSLR
Sbjct: 15  MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 74

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASS--------------------- 120
           EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASS                     
Sbjct: 75  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 134

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 135 DRSRGMGGGGYGGGGGGYGGGGYGGGGGGYGGGGYGGGGGYGGGGSYGGGGGSYGGGAYG 194

Query: 181 ---------------------------------------------GNDAGSNAASNFASG 195
                                                        GNDAGSNAASNFASG
Sbjct: 195 GGVSGGGGYGGESGGGFGSGFSAGDNYSSSFGSGSQGSGGNYGTGGNDAGSNAASNFASG 254

[Close]

BLAST of Cp4.1LG18g07080 vs. NCBI nr
Match: XP_022987970.1 (glycine-rich RNA-binding protein 2, mitochondrial-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 290 bits (743), Expect = 4.76e-96
Identity = 187/286 (65.38%), Postives = 190/286 (66.43%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFVGGISYNTDDQSLR 60
           MAFLSKVGNILRQ ANKRTGLNLQAPSLSI QAVRWMSSMQSSKVFVGGISY+TDDQSLR
Sbjct: 1   MAFLSKVGNILRQSANKRTGLNLQAPSLSICQAVRWMSSMQSSKVFVGGISYSTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASS--------------------- 120
           EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASS                     
Sbjct: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 DRSRGMGGGGYGGGGGSYSGGAYGGGGSGGGGYGGESGGGFGSGFSTGDNYSSSFGGGSQ 180

Query: 181 ---------GNDAGSNAASNFASGNTFGSGTSAGFDTNVSNGGGDYFANSGSDASSGFGG 195
                    GNDAGSN+ASNFASGN   SGTSAGFDTNVSNGGGDYFANSGSDASSGFGG
Sbjct: 181 GSGGNYGTGGNDAGSNSASNFASGN---SGTSAGFDTNVSNGGGDYFANSGSDASSGFGG 240

[Close]

BLAST of Cp4.1LG18g07080 vs. ExPASy TrEMBL
Match: A0A6J1E1P2 (glycine-rich RNA-binding protein 3, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111430026 PE=4 SV=1)

HSP 1 Score: 299 bits (765), Expect = 3.12e-99
Identity = 191/316 (60.44%), Postives = 194/316 (61.39%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFVGGISYNTDDQSLR 60
           MAFLSKVGNILRQGANKRTGLN QAPSLSIFQAVRWMSSMQSSKVF+GGISY+TDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRTGLNFQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASS--------------------- 120
           EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASS                     
Sbjct: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 DRSRGMGGGGYGGGGGGYGGGGYGGGGGGYGGGGGGYGGGSYGGGGGSYGGGSYGGGGSG 180

Query: 181 ----------------------------------------GNDAGSNAASNFASGNTFGS 195
                                                   GNDAGSNAASNFASGNTFGS
Sbjct: 181 GGGYGGESGGGFGSGFSAGDNYSSSFGSGSQGSGGNYGTGGNDAGSNAASNFASGNTFGS 240

[Close]

BLAST of Cp4.1LG18g07080 vs. ExPASy TrEMBL
Match: A0A6J1JIA1 (glycine-rich RNA-binding protein 2, mitochondrial-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485357 PE=4 SV=1)

HSP 1 Score: 290 bits (743), Expect = 2.31e-96
Identity = 187/286 (65.38%), Postives = 190/286 (66.43%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFVGGISYNTDDQSLR 60
           MAFLSKVGNILRQ ANKRTGLNLQAPSLSI QAVRWMSSMQSSKVFVGGISY+TDDQSLR
Sbjct: 1   MAFLSKVGNILRQSANKRTGLNLQAPSLSICQAVRWMSSMQSSKVFVGGISYSTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASS--------------------- 120
           EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASS                     
Sbjct: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 DRSRGMGGGGYGGGGGSYSGGAYGGGGSGGGGYGGESGGGFGSGFSTGDNYSSSFGGGSQ 180

Query: 181 ---------GNDAGSNAASNFASGNTFGSGTSAGFDTNVSNGGGDYFANSGSDASSGFGG 195
                    GNDAGSN+ASNFASGN   SGTSAGFDTNVSNGGGDYFANSGSDASSGFGG
Sbjct: 181 GSGGNYGTGGNDAGSNSASNFASGN---SGTSAGFDTNVSNGGGDYFANSGSDASSGFGG 240

[Close]

BLAST of Cp4.1LG18g07080 vs. ExPASy TrEMBL
Match: A0A6J1JKW7 (glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485357 PE=4 SV=1)

HSP 1 Score: 278 bits (711), Expect = 4.74e-91
Identity = 187/318 (58.81%), Postives = 190/318 (59.75%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFVGGISYNTDDQSLR 60
           MAFLSKVGNILRQ ANKRTGLNLQAPSLSI QAVRWMSSMQSSKVFVGGISY+TDDQSLR
Sbjct: 1   MAFLSKVGNILRQSANKRTGLNLQAPSLSICQAVRWMSSMQSSKVFVGGISYSTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASS--------------------- 120
           EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASS                     
Sbjct: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 DRSRGMGGGYGGGYGGGGGGYGGGGYGGGGYGGGGYGGGSGGYGGGGGSYSGGAYGGGGS 180

Query: 181 -----------------------------------------GNDAGSNAASNFASGNTFG 195
                                                    GNDAGSN+ASNFASGN   
Sbjct: 181 GGGGYGGESGGGFGSGFSTGDNYSSSFGGGSQGSGGNYGTGGNDAGSNSASNFASGN--- 240

[Close]

BLAST of Cp4.1LG18g07080 vs. ExPASy TrEMBL
Match: A0A6J1EZK6 (glycine-rich RNA-binding protein 2, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111440991 PE=4 SV=1)

HSP 1 Score: 223 bits (568), Expect = 1.73e-69
Identity = 157/309 (50.81%), Postives = 172/309 (55.66%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFVGGISYNTDDQSLR 60
           MAFLSKVGNILRQGANKR G +LQAPSLSI QAVRWMSSMQSSK+FVGGIS++TDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRIGSDLQAPSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASS--------------------- 120
           EAFTKYGEV+EAR+IVDRETGRSRGFGFVTYTSSEEASS                     
Sbjct: 61  EAFTKYGEVVEARIIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 DRSRGVGGGGYGGGGGYGGGGYGGGGGYGGGGGYGDGGAGGYGGGGSGGYGDGSGGFSTT 180

Query: 181 GNDAGSNAASNFASG---------NTFGS-------------GTSAGFDT---------- 195
           G  +G N ++NF  G         N F S             G  AG++           
Sbjct: 181 GYSSGGNYSNNFGGGSQGSGGNYGNEFASDSRGSVSTGGGFGGNDAGYNASNFSGGDSGN 240

[Close]

BLAST of Cp4.1LG18g07080 vs. ExPASy TrEMBL
Match: A0A6J1I6P9 (glycine-rich RNA-binding protein 2, mitochondrial-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111470449 PE=4 SV=1)

HSP 1 Score: 219 bits (559), Expect = 2.77e-68
Identity = 153/297 (51.52%), Postives = 170/297 (57.24%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFVGGISYNTDDQSLR 60
           MAFLSKVGNILRQGANK+ G +LQA SLSI QAVRWMSSMQSSK+FVGGIS++TDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKKIGSDLQASSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASS--------------------- 120
           EAFTKYGEV+EAR+IVDRETGRSRGFGFVTYTSSEEASS                     
Sbjct: 61  EAFTKYGEVVEARIIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 ------------------------------------------------GNDAGSNAASNF 180
                                                           G  +G N  +NF
Sbjct: 121 DRSRGVGGGGYGGGGGYGGGGYGGGGPGGYGGGGSGGYGDGSGGFSTTGYSSGGNYTNNF 180

Query: 181 ASG---------NTFGS-------------GTSAGFDT-----------NVSNGGGDYFA 195
             G         N F S             G  AG++            NVS GGGDYF+
Sbjct: 181 GGGSQGTGGNYGNEFASDSRGSVSTGGGFGGNDAGYNASNFSGGDSGNYNVSGGGGDYFS 240

[Close]

BLAST of Cp4.1LG18g07080 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 125.2 bits (313), Expect = 5.9e-29
Identity = 91/197 (46.19%), Postives = 111/197 (56.35%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFVGGISYNTDDQSLR 60
           MAFLSK GNIL+Q  NK+    +   S S+FQA+R MS   SSK+F+GG++Y+ D+ SLR
Sbjct: 1   MAFLSKFGNILKQTTNKQLNAQVSLSSPSLFQAIRCMS---SSKLFIGGMAYSMDEDSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASS-----------GNDAGSNAAS 120
           EAFTKYGEV++ RVI+DRETGRSRGFGFVT+TSSE ASS           G     N A+
Sbjct: 61  EAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYAN 120

Query: 121 NFASGNTFGSGTSAGFDTNVSNGGGDYFANSGSDASSGFGGYTG------GDQFGSNEAD 180
           +  SG  FG G   G        GG      G   S G+GG  G      G  +G N A 
Sbjct: 121 DRTSGGGFGGGGYGGGGGGYGGSGGYGGGAGGYGGSGGYGGGAGGYGGNSGGGYGGNAAG 180

[Close]

BLAST of Cp4.1LG18g07080 vs. TAIR 10
Match: AT1G74230.1 (glycine-rich RNA-binding protein 5 )

HSP 1 Score: 106.7 bits (265), Expect = 2.2e-23
Identity = 86/182 (47.25%), Postives = 111/182 (60.99%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFVGGISYNTDDQSLR 60
           MAFLSKVG +  Q ++  T       S S+ Q++R MS   SSK+FVGGISY+TD+  LR
Sbjct: 1   MAFLSKVGRLFSQTSSHVTA------SSSMLQSIRCMS---SSKIFVGGISYSTDEFGLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASS-----GNDA-GSNAASNFASG 120
           EAF+KYGEV++A++IVDRETGRSRGF FVT+TS+EEAS+     G D  G     N+A+ 
Sbjct: 61  EAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQLDGQDLHGRRIRVNYATE 120

Query: 121 NTFGSGTSAGFDTNVSNGGGDYFANSG--SDASSGFGGYTGGDQFGSNEADTLNASGDQG 175
              G G   GF       GG Y A+ G     + G+GG  GG  +G N + + NA G  G
Sbjct: 121 RGSGFG-GRGF----GGPGGGYGASDGGYGAPAGGYGGGAGG--YGGNSSYSGNAGGGGG 166

[Close]

BLAST of Cp4.1LG18g07080 vs. TAIR 10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 85.1 bits (209), Expect = 6.7e-17
Identity = 62/151 (41.06%), Postives = 82/151 (54.30%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFVGGISYNTDDQSLR 60
           MAF +K+  ILRQG ++ +      P  S+  ++R+M    SSK+FVGG+S+ TDD SL+
Sbjct: 1   MAFCNKLSGILRQGVSQSS----NGPVTSMLGSLRYM----SSKLFVGGLSWGTDDSSLK 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSGNDAGSNAASNFASGNTFGSG 120
           +AFT +GEV EA VI DRETGRSRGFGFV++       S  D+ +NA          G  
Sbjct: 61  QAFTSFGEVTEATVIADRETGRSRGFGFVSF-------SCEDSANNAIKEMDGKELNGRQ 120

Query: 121 TSAGFDTNVSNGGGDYFANSGSDASSGFGGY 152
                 T  S+     F   G     G GGY
Sbjct: 121 IRVNLATERSSAPRSSFGGGGGYGGGGGGGY 136

[Close]

BLAST of Cp4.1LG18g07080 vs. TAIR 10
Match: AT3G23830.2 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 85.1 bits (209), Expect = 6.7e-17
Identity = 62/151 (41.06%), Postives = 82/151 (54.30%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFVGGISYNTDDQSLR 60
           MAF +K+  ILRQG ++ +      P  S+  ++R+M    SSK+FVGG+S+ TDD SL+
Sbjct: 1   MAFCNKLSGILRQGVSQSS----NGPVTSMLGSLRYM----SSKLFVGGLSWGTDDSSLK 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSGNDAGSNAASNFASGNTFGSG 120
           +AFT +GEV EA VI DRETGRSRGFGFV++       S  D+ +NA          G  
Sbjct: 61  QAFTSFGEVTEATVIADRETGRSRGFGFVSF-------SCEDSANNAIKEMDGKELNGRQ 120

Query: 121 TSAGFDTNVSNGGGDYFANSGSDASSGFGGY 152
                 T  S+     F   G     G GGY
Sbjct: 121 IRVNLATERSSAPRSSFGGGGGYGGGGGGGY 136

[Close]

BLAST of Cp4.1LG18g07080 vs. TAIR 10
Match: AT4G13850.1 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 81.3 bits (199), Expect = 9.7e-16
Identity = 65/170 (38.24%), Postives = 92/170 (54.12%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFVGGISYNTDDQSLR 60
           MAF +K+G +LRQ  +     N   P  S+  ++R M    S+K+F+GG+S+ TDD SLR
Sbjct: 1   MAFCNKLGGLLRQNISS----NGNVPVTSMLGSLRLM----STKLFIGGLSWGTDDASLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEAS-----------SGNDAGSNAAS 120
           +AF  +G+V++A+VIVDRETGRSRGFGFV +     A+           +G     N A+
Sbjct: 61  DAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 120

Query: 121 NFASG-NTFGSGTSAGFDTNVSNGGGDYFANSGSDASSGFGGYTGGDQFG 159
           +  S    +G G   G+     +GGG  +   G     G GGY GG   G
Sbjct: 121 DRPSAPRAYGGG--GGY-----SGGGGGYGGGGGGYGGGGGGYGGGGDGG 155

The following BLAST results are available for this feature:

BLAST of Cp4.1LG18g07080 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNR1	8.3e-28	46.19	Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9C909	3.0e-22	47.25	Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9LIS2	9.5e-16	41.06	Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9SVM8	1.4e-14	38.24	Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q43472	8.3e-12	43.51	Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare OX=4513 GN=blt801 PE=...	[more]

BLAST of Cp4.1LG18g07080 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023516049.1	4.98e-101	61.51	glycine-rich RNA-binding protein 3, mitochondrial-like [Cucurbita pepo subsp. pe...	[more]
XP_022921902.1	6.44e-99	60.44	glycine-rich RNA-binding protein 3, mitochondrial-like [Cucurbita moschata]	[more]
KAG7023294.1	1.02e-97	60.32	Glycine-rich RNA-binding protein 3, mitochondrial [Cucurbita argyrosperma subsp....	[more]
KAG6589603.1	1.59e-96	59.19	Glycine-rich RNA-binding protein 3, mitochondrial, partial [Cucurbita argyrosper...	[more]
XP_022987970.1	4.76e-96	65.38	glycine-rich RNA-binding protein 2, mitochondrial-like isoform X2 [Cucurbita max...	[more]

BLAST of Cp4.1LG18g07080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E1P2	3.12e-99	60.44	glycine-rich RNA-binding protein 3, mitochondrial-like OS=Cucurbita moschata OX=...	[more]
A0A6J1JIA1	2.31e-96	65.38	glycine-rich RNA-binding protein 2, mitochondrial-like isoform X2 OS=Cucurbita m...	[more]
A0A6J1JKW7	4.74e-91	58.81	glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 OS=Cucurbita m...	[more]
A0A6J1EZK6	1.73e-69	50.81	glycine-rich RNA-binding protein 2, mitochondrial-like OS=Cucurbita moschata OX=...	[more]
A0A6J1I6P9	2.77e-68	51.52	glycine-rich RNA-binding protein 2, mitochondrial-like isoform X2 OS=Cucurbita m...	[more]

BLAST of Cp4.1LG18g07080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G61030.1	5.9e-29	46.19	glycine-rich RNA-binding protein 3	[more]
AT1G74230.1	2.2e-23	47.25	glycine-rich RNA-binding protein 5	[more]
AT3G23830.1	6.7e-17	41.06	glycine-rich RNA-binding protein 4	[more]
AT3G23830.2	6.7e-17	41.06	glycine-rich RNA-binding protein 4	[more]
AT4G13850.1	9.7e-16	38.24	glycine-rich RNA-binding protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 44..126 e-value: 8.1E-14 score: 61.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 45..97 e-value: 7.8E-17 score: 60.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 43..114 score: 15.937304
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 14..103 e-value: 3.8E-21 score: 77.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 148..173
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 148..195
None	No IPR available	PANTHER	PTHR48027:SF9	GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL	coord: 1..188
None	No IPR available	PANTHER	PTHR48027	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED	coord: 1..188
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 40..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG18g07080.1	Cp4.1LG18g07080.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding