Cp4.1LG18g06130 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTCGTTCCTCTCGTTCGTACTACTACAGAAGGACTTCTGAAGGGGTTCCGTTTCAGTGGGAGATGCTACCGGGGACACCCAAGAATACTCCGCCGCTCGTGGAGCCAGTTCCACTGCGCATCTGCCCGCCGCCGGTTGTGGTCAGCCTTAGCCTCTTGAAGCCGGCCACGGTTCAGAATAAACAGCCGCAGTTTCTATTATTTCGGCTGTGGAGGAAGCAGTCCAAGTCCAACAACAATTATTGTCCGTTGGATGACCATCGTTCGAAATTTGGATCTCCATGCAAAGCAAAATCTCGTACGCCGGCGGCGGAATCTCCCGGGCACTGGCGGTTTGGATGCAGTCCGTGGAGGATCAACCCTATTAAAATAGCTACTGGAAGGCGAGTTTAA ATGGGTCGTTCCTCTCGTTCGTACTACTACAGAAGGACTTCTGAAGGGGTTCCGTTTCAGTGGGAGATGCTACCGGGGACACCCAAGAATACTCCGCCGCTCGTGGAGCCAGTTCCACTGCGCATCTGCCCGCCGCCGGTTGTGGTCAGCCTTAGCCTCTTGAAGCCGGCCACGGTTCAGAATAAACAGCCGCAGTTTCTATTATTTCGGCTGTGGAGGAAGCAGTCCAAGTCCAACAACAATTATTGTCCGTTGGATGACCATCGTTCGAAATTTGGATCTCCATGCAAAGCAAAATCTCGTACGCCGGCGGCGGAATCTCCCGGGCACTGGCGGTTTGGATGCAGTCCGTGGAGGATCAACCCTATTAAAATAGCTACTGGAAGGCGAGTTTAA ATGGGTCGTTCCTCTCGTTCGTACTACTACAGAAGGACTTCTGAAGGGGTTCCGTTTCAGTGGGAGATGCTACCGGGGACACCCAAGAATACTCCGCCGCTCGTGGAGCCAGTTCCACTGCGCATCTGCCCGCCGCCGGTTGTGGTCAGCCTTAGCCTCTTGAAGCCGGCCACGGTTCAGAATAAACAGCCGCAGTTTCTATTATTTCGGCTGTGGAGGAAGCAGTCCAAGTCCAACAACAATTATTGTCCGTTGGATGACCATCGTTCGAAATTTGGATCTCCATGCAAAGCAAAATCTCGTACGCCGGCGGCGGAATCTCCCGGGCACTGGCGGTTTGGATGCAGTCCGTGGAGGATCAACCCTATTAAAATAGCTACTGGAAGGCGAGTTTAA MGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPLRICPPPVVVSLSLLKPATVQNKQPQFLLFRLWRKQSKSNNNYCPLDDHRSKFGSPCKAKSRTPAAESPGHWRFGCSPWRINPIKIATGRRV Homology
BLAST of Cp4.1LG18g06130 vs. NCBI nr
Match: KAG6589706.1 (hypothetical protein SDJN03_15129, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 260 bits (665), Expect = 1.59e-87 Identity = 124/131 (94.66%), Postives = 125/131 (95.42%), Query Frame = 0
BLAST of Cp4.1LG18g06130 vs. NCBI nr
Match: KAG7023386.1 (hypothetical protein SDJN02_14411, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 248 bits (633), Expect = 2.45e-82 Identity = 118/125 (94.40%), Postives = 119/125 (95.20%), Query Frame = 0
BLAST of Cp4.1LG18g06130 vs. NCBI nr
Match: XP_038878338.1 (uncharacterized protein LOC120070597 [Benincasa hispida]) HSP 1 Score: 165 bits (418), Expect = 1.10e-49 Identity = 91/147 (61.90%), Postives = 98/147 (66.67%), Query Frame = 0
BLAST of Cp4.1LG18g06130 vs. NCBI nr
Match: XP_004146363.1 (uncharacterized protein LOC101210202 [Cucumis sativus] >KGN65458.1 hypothetical protein Csa_019691 [Cucumis sativus]) HSP 1 Score: 152 bits (385), Expect = 2.54e-44 Identity = 87/149 (58.39%), Postives = 94/149 (63.09%), Query Frame = 0
BLAST of Cp4.1LG18g06130 vs. NCBI nr
Match: XP_022930189.1 (uncharacterized protein LOC111436686 [Cucurbita moschata]) HSP 1 Score: 149 bits (377), Expect = 4.41e-43 Identity = 84/151 (55.63%), Postives = 95/151 (62.91%), Query Frame = 0
BLAST of Cp4.1LG18g06130 vs. ExPASy TrEMBL
Match: A0A0A0LUL8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423160 PE=4 SV=1) HSP 1 Score: 152 bits (385), Expect = 1.23e-44 Identity = 87/149 (58.39%), Postives = 94/149 (63.09%), Query Frame = 0
BLAST of Cp4.1LG18g06130 vs. ExPASy TrEMBL
Match: A0A6J1KZJ1 (uncharacterized protein LOC111499680 OS=Cucurbita maxima OX=3661 GN=LOC111499680 PE=4 SV=1) HSP 1 Score: 149 bits (377), Expect = 2.14e-43 Identity = 84/151 (55.63%), Postives = 95/151 (62.91%), Query Frame = 0
BLAST of Cp4.1LG18g06130 vs. ExPASy TrEMBL
Match: A0A6J1EQV3 (uncharacterized protein LOC111436686 OS=Cucurbita moschata OX=3662 GN=LOC111436686 PE=4 SV=1) HSP 1 Score: 149 bits (377), Expect = 2.14e-43 Identity = 84/151 (55.63%), Postives = 95/151 (62.91%), Query Frame = 0
BLAST of Cp4.1LG18g06130 vs. ExPASy TrEMBL
Match: A0A5D3CJV8 (Oxysterol-binding protein-related protein 4B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00380 PE=4 SV=1) HSP 1 Score: 145 bits (367), Expect = 3.40e-42 Identity = 84/150 (56.00%), Postives = 94/150 (62.67%), Query Frame = 0
BLAST of Cp4.1LG18g06130 vs. ExPASy TrEMBL
Match: A0A7J9MS94 (Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_010158 PE=4 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 1.88e-16 Identity = 57/156 (36.54%), Postives = 73/156 (46.79%), Query Frame = 0
BLAST of Cp4.1LG18g06130 vs. TAIR 10
Match: AT4G25845.1 (BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 4B (TAIR:AT4G25850.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 54.3 bits (129), Expect = 8.6e-08 Identity = 33/66 (50.00%), Postives = 43/66 (65.15%), Query Frame = 0
BLAST of Cp4.1LG18g06130 vs. TAIR 10
Match: AT4G25850.2 (OSBP(oxysterol binding protein)-related protein 4B ) HSP 1 Score: 54.3 bits (129), Expect = 8.6e-08 Identity = 33/66 (50.00%), Postives = 43/66 (65.15%), Query Frame = 0
BLAST of Cp4.1LG18g06130 vs. TAIR 10
Match: AT3G56260.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40475.1). ) HSP 1 Score: 40.8 bits (94), Expect = 9.8e-04 Identity = 31/79 (39.24%), Postives = 42/79 (53.16%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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