Cp4.1LG18g06130 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG18g06130
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionOxysterol-binding protein-related protein 4B-like
LocationCp4.1LG18: 6473691 .. 6474086 (+)
RNA-Seq ExpressionCp4.1LG18g06130
SyntenyCp4.1LG18g06130
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCGTTCCTCTCGTTCGTACTACTACAGAAGGACTTCTGAAGGGGTTCCGTTTCAGTGGGAGATGCTACCGGGGACACCCAAGAATACTCCGCCGCTCGTGGAGCCAGTTCCACTGCGCATCTGCCCGCCGCCGGTTGTGGTCAGCCTTAGCCTCTTGAAGCCGGCCACGGTTCAGAATAAACAGCCGCAGTTTCTATTATTTCGGCTGTGGAGGAAGCAGTCCAAGTCCAACAACAATTATTGTCCGTTGGATGACCATCGTTCGAAATTTGGATCTCCATGCAAAGCAAAATCTCGTACGCCGGCGGCGGAATCTCCCGGGCACTGGCGGTTTGGATGCAGTCCGTGGAGGATCAACCCTATTAAAATAGCTACTGGAAGGCGAGTTTAA

mRNA sequence

ATGGGTCGTTCCTCTCGTTCGTACTACTACAGAAGGACTTCTGAAGGGGTTCCGTTTCAGTGGGAGATGCTACCGGGGACACCCAAGAATACTCCGCCGCTCGTGGAGCCAGTTCCACTGCGCATCTGCCCGCCGCCGGTTGTGGTCAGCCTTAGCCTCTTGAAGCCGGCCACGGTTCAGAATAAACAGCCGCAGTTTCTATTATTTCGGCTGTGGAGGAAGCAGTCCAAGTCCAACAACAATTATTGTCCGTTGGATGACCATCGTTCGAAATTTGGATCTCCATGCAAAGCAAAATCTCGTACGCCGGCGGCGGAATCTCCCGGGCACTGGCGGTTTGGATGCAGTCCGTGGAGGATCAACCCTATTAAAATAGCTACTGGAAGGCGAGTTTAA

Coding sequence (CDS)

ATGGGTCGTTCCTCTCGTTCGTACTACTACAGAAGGACTTCTGAAGGGGTTCCGTTTCAGTGGGAGATGCTACCGGGGACACCCAAGAATACTCCGCCGCTCGTGGAGCCAGTTCCACTGCGCATCTGCCCGCCGCCGGTTGTGGTCAGCCTTAGCCTCTTGAAGCCGGCCACGGTTCAGAATAAACAGCCGCAGTTTCTATTATTTCGGCTGTGGAGGAAGCAGTCCAAGTCCAACAACAATTATTGTCCGTTGGATGACCATCGTTCGAAATTTGGATCTCCATGCAAAGCAAAATCTCGTACGCCGGCGGCGGAATCTCCCGGGCACTGGCGGTTTGGATGCAGTCCGTGGAGGATCAACCCTATTAAAATAGCTACTGGAAGGCGAGTTTAA

Protein sequence

MGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPLRICPPPVVVSLSLLKPATVQNKQPQFLLFRLWRKQSKSNNNYCPLDDHRSKFGSPCKAKSRTPAAESPGHWRFGCSPWRINPIKIATGRRV
Homology
BLAST of Cp4.1LG18g06130 vs. NCBI nr
Match: KAG6589706.1 (hypothetical protein SDJN03_15129, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 260 bits (665), Expect = 1.59e-87
Identity = 124/131 (94.66%), Postives = 125/131 (95.42%), Query Frame = 0

Query: 1   MGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPLRICPPPVVVSLSLLKPATVQ 60
           MGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVP+RI PPPVVVSLSLLKPATVQ
Sbjct: 1   MGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLKPATVQ 60

Query: 61  NKQPQFLLFRLWRKQSKSNNNYCPLDDHRSKFGSPCKAKSRTPAAESPGHWRFGCSPWRI 120
           NKQPQFLLFR WRKQSKSNNN  PLDDHRSKFGSPCKAKS TPAAESPGHWRFGCSPWRI
Sbjct: 61  NKQPQFLLFRPWRKQSKSNNNSRPLDDHRSKFGSPCKAKSPTPAAESPGHWRFGCSPWRI 120

Query: 121 NPIKIATGRRV 131
           NPIKI TGRRV
Sbjct: 121 NPIKIGTGRRV 131

BLAST of Cp4.1LG18g06130 vs. NCBI nr
Match: KAG7023386.1 (hypothetical protein SDJN02_14411, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 248 bits (633), Expect = 2.45e-82
Identity = 118/125 (94.40%), Postives = 119/125 (95.20%), Query Frame = 0

Query: 1   MGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPLRICPPPVVVSLSLLKPATVQ 60
           MGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVP+RI PPPVVVSLSLLKPATVQ
Sbjct: 23  MGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLKPATVQ 82

Query: 61  NKQPQFLLFRLWRKQSKSNNNYCPLDDHRSKFGSPCKAKSRTPAAESPGHWRFGCSPWRI 120
           NKQPQFLLFR WRKQSKSNNN  PLDDHRSKFGSPCKAKS TPAAESPGHWRFGC PWRI
Sbjct: 83  NKQPQFLLFRPWRKQSKSNNNSRPLDDHRSKFGSPCKAKSPTPAAESPGHWRFGCRPWRI 142

Query: 121 NPIKI 125
           NPIKI
Sbjct: 143 NPIKI 147

BLAST of Cp4.1LG18g06130 vs. NCBI nr
Match: XP_038878338.1 (uncharacterized protein LOC120070597 [Benincasa hispida])

HSP 1 Score: 165 bits (418), Expect = 1.10e-49
Identity = 91/147 (61.90%), Postives = 98/147 (66.67%), Query Frame = 0

Query: 1   MGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPLRICPPPVVVSLSLLKPA-TV 60
           M RSSR +YYRRT+EGVPFQWEM PGTPKNTPPL + VP  I PPP ++SLSL KP   V
Sbjct: 1   MSRSSR-FYYRRTTEGVPFQWEMQPGTPKNTPPLTDVVPPPISPPPAMLSLSLSKPGRAV 60

Query: 61  QNKQPQFLLFRLWRKQSKSNNNYCPLDDHRSKFG---------------SPCKAKSRTPA 120
           QNKQP F+LF  W KQ K   N CPLD +  K                 S CKAKS   A
Sbjct: 61  QNKQPLFVLFGPWWKQFKPKKNPCPLDHNNDKERLRFDSCGSHCEFMEESSCKAKSLQ-A 120

Query: 121 AESPGHWRFGCSPWRINPIKIATGRRV 131
           AES GHWR GC PWRINPIKIATGRRV
Sbjct: 121 AESSGHWRVGCGPWRINPIKIATGRRV 145

BLAST of Cp4.1LG18g06130 vs. NCBI nr
Match: XP_004146363.1 (uncharacterized protein LOC101210202 [Cucumis sativus] >KGN65458.1 hypothetical protein Csa_019691 [Cucumis sativus])

HSP 1 Score: 152 bits (385), Expect = 2.54e-44
Identity = 87/149 (58.39%), Postives = 94/149 (63.09%), Query Frame = 0

Query: 1   MGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPLRICPPPVVVSLSLLKPA-TV 60
           M RSSR +YYRRT+EGVPFQWEM PGTPKN PPL E +   I PPP V+SL L KP   V
Sbjct: 25  MSRSSR-FYYRRTTEGVPFQWEMQPGTPKNNPPLTEVILPPISPPPAVLSLGLSKPVRAV 84

Query: 61  QNKQPQFLLFRLWRKQSKSN--NNYCPLD----DHRSKFGS-----------PCKAKSRT 120
           QNKQP F+LF  WRKQ K     N CPLD    + R +F S            CK KS  
Sbjct: 85  QNKQPLFVLFGPWRKQPKPKPKKNPCPLDLNNKNERLRFDSCGSQCELMAESSCKGKS-A 144

Query: 121 PAAESPGHWRFGCSPWRINPIKIATGRRV 131
           PA  S GHWR GC PWRINPIKI  GRRV
Sbjct: 145 PAGGSSGHWRLGCGPWRINPIKIGMGRRV 171

BLAST of Cp4.1LG18g06130 vs. NCBI nr
Match: XP_022930189.1 (uncharacterized protein LOC111436686 [Cucurbita moschata])

HSP 1 Score: 149 bits (377), Expect = 4.41e-43
Identity = 84/151 (55.63%), Postives = 95/151 (62.91%), Query Frame = 0

Query: 1   MGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPLRICPPPVVVSLSLLKPATVQ 60
           +G SSR YYYRRT+EGVPFQWEM PGTPK+ PP  E V L I PPP  +SL   KPA   
Sbjct: 24  LGCSSRLYYYRRTTEGVPFQWEMQPGTPKD-PPYTEAVTLLITPPPAALSLRPPKPARTH 83

Query: 61  NKQPQFLLFRLWRKQSKSNNNYCPLD---DHRSKFGS----------PCKAKSRT----- 120
            KQ  FLLFR WRKQSKS  + C  D   D R++FGS          PC+ KS +     
Sbjct: 84  GKQSLFLLFRPWRKQSKSQKHSCLSDEFGDGRTRFGSCGSQCEFIQSPCEPKSSSSSSWS 143

Query: 121 --PAAESPGHWRFGCSPWRINPIKIATGRRV 131
             PAAES  H R GC PWRINP++IA GRRV
Sbjct: 144 SLPAAESSAHRRLGCGPWRINPLRIAIGRRV 173

BLAST of Cp4.1LG18g06130 vs. ExPASy TrEMBL
Match: A0A0A0LUL8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423160 PE=4 SV=1)

HSP 1 Score: 152 bits (385), Expect = 1.23e-44
Identity = 87/149 (58.39%), Postives = 94/149 (63.09%), Query Frame = 0

Query: 1   MGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPLRICPPPVVVSLSLLKPA-TV 60
           M RSSR +YYRRT+EGVPFQWEM PGTPKN PPL E +   I PPP V+SL L KP   V
Sbjct: 25  MSRSSR-FYYRRTTEGVPFQWEMQPGTPKNNPPLTEVILPPISPPPAVLSLGLSKPVRAV 84

Query: 61  QNKQPQFLLFRLWRKQSKSN--NNYCPLD----DHRSKFGS-----------PCKAKSRT 120
           QNKQP F+LF  WRKQ K     N CPLD    + R +F S            CK KS  
Sbjct: 85  QNKQPLFVLFGPWRKQPKPKPKKNPCPLDLNNKNERLRFDSCGSQCELMAESSCKGKS-A 144

Query: 121 PAAESPGHWRFGCSPWRINPIKIATGRRV 131
           PA  S GHWR GC PWRINPIKI  GRRV
Sbjct: 145 PAGGSSGHWRLGCGPWRINPIKIGMGRRV 171

BLAST of Cp4.1LG18g06130 vs. ExPASy TrEMBL
Match: A0A6J1KZJ1 (uncharacterized protein LOC111499680 OS=Cucurbita maxima OX=3661 GN=LOC111499680 PE=4 SV=1)

HSP 1 Score: 149 bits (377), Expect = 2.14e-43
Identity = 84/151 (55.63%), Postives = 95/151 (62.91%), Query Frame = 0

Query: 1   MGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPLRICPPPVVVSLSLLKPATVQ 60
           +G SSR YYYRRT+EGVPFQWEM PGTPK+ PP  E V L I PPP  +SL   KPA   
Sbjct: 24  LGCSSRLYYYRRTTEGVPFQWEMQPGTPKD-PPYTEAVTLLITPPPAALSLRPPKPARTH 83

Query: 61  NKQPQFLLFRLWRKQSKSNNNYCPLD---DHRSKFGS----------PCKAKSRT----- 120
            KQ  FLLFR WRKQSKS  + C  D   D R++FGS          PC+ KS +     
Sbjct: 84  GKQSLFLLFRPWRKQSKSKKHSCLSDEFEDGRTRFGSCGSQCEFIQSPCEPKSSSSSAWS 143

Query: 121 --PAAESPGHWRFGCSPWRINPIKIATGRRV 131
             PAAES  H R GC PWRINP++IA GRRV
Sbjct: 144 SLPAAESSAHRRLGCGPWRINPLRIAIGRRV 173

BLAST of Cp4.1LG18g06130 vs. ExPASy TrEMBL
Match: A0A6J1EQV3 (uncharacterized protein LOC111436686 OS=Cucurbita moschata OX=3662 GN=LOC111436686 PE=4 SV=1)

HSP 1 Score: 149 bits (377), Expect = 2.14e-43
Identity = 84/151 (55.63%), Postives = 95/151 (62.91%), Query Frame = 0

Query: 1   MGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPLRICPPPVVVSLSLLKPATVQ 60
           +G SSR YYYRRT+EGVPFQWEM PGTPK+ PP  E V L I PPP  +SL   KPA   
Sbjct: 24  LGCSSRLYYYRRTTEGVPFQWEMQPGTPKD-PPYTEAVTLLITPPPAALSLRPPKPARTH 83

Query: 61  NKQPQFLLFRLWRKQSKSNNNYCPLD---DHRSKFGS----------PCKAKSRT----- 120
            KQ  FLLFR WRKQSKS  + C  D   D R++FGS          PC+ KS +     
Sbjct: 84  GKQSLFLLFRPWRKQSKSQKHSCLSDEFGDGRTRFGSCGSQCEFIQSPCEPKSSSSSSWS 143

Query: 121 --PAAESPGHWRFGCSPWRINPIKIATGRRV 131
             PAAES  H R GC PWRINP++IA GRRV
Sbjct: 144 SLPAAESSAHRRLGCGPWRINPLRIAIGRRV 173

BLAST of Cp4.1LG18g06130 vs. ExPASy TrEMBL
Match: A0A5D3CJV8 (Oxysterol-binding protein-related protein 4B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00380 PE=4 SV=1)

HSP 1 Score: 145 bits (367), Expect = 3.40e-42
Identity = 84/150 (56.00%), Postives = 94/150 (62.67%), Query Frame = 0

Query: 1   MGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPLRICPPPVVVSLSLLKPA-TV 60
           M RSSR +YYRRT+EGVPFQWEM PGTPK+ PPL E +P  I PPP V+SL   KP   V
Sbjct: 1   MSRSSR-FYYRRTTEGVPFQWEMQPGTPKSNPPLTEVIPPPISPPPAVLSLGFSKPVRVV 60

Query: 61  QNKQPQFLLFRLWRKQSKSN----NNYCPLD----DHRSKF---GSPCK------AKSRT 120
           QNKQ  F+LF  WRKQ K       N CPLD    + R +F   GS C+       K R+
Sbjct: 61  QNKQSLFVLFGPWRKQPKPKPKPKKNPCPLDLNKNNERLRFDSCGSQCELMAESSCKDRS 120

Query: 121 -PAAESPGHWRFGCSPWRINPIKIATGRRV 131
            P  ES G WR GC PWRINPIKI  GRRV
Sbjct: 121 SPVGESSGQWRLGCGPWRINPIKIGMGRRV 149

BLAST of Cp4.1LG18g06130 vs. ExPASy TrEMBL
Match: A0A7J9MS94 (Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_010158 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.88e-16
Identity = 57/156 (36.54%), Postives = 73/156 (46.79%), Query Frame = 0

Query: 2   GRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPLRICPPPVVVSLSLLKP---AT 61
           G SSR YYYR +SEG+PF WEM PGTPK   P  E V   I PPP ++SL L KP     
Sbjct: 30  GCSSRIYYYR-SSEGIPFNWEMQPGTPKE--PRKEDVLPPISPPPALLSLGLPKPRIDVV 89

Query: 62  VQNKQPQFLLFRLWRK-------------QSKSNNNY--CPLDDHRSKFGSPCKAKSR-- 121
            +NK  +  +F+ W+              QS   +NY  C  DD R   GSPC + S   
Sbjct: 90  EENKVSKLKVFKFWKHGKKXDXKKKIDDHQSDKYSNYETCSSDDDREFVGSPCVSSSSSS 149

Query: 122 --------TPAAESPGHWRFGCSPWRINPIKIATGR 129
                   TP+ +S  +  +GC P       +   R
Sbjct: 150 SFSFGSSSTPSRDSSFNRHYGCGPLNFASFLVRVSR 182

BLAST of Cp4.1LG18g06130 vs. TAIR 10
Match: AT4G25845.1 (BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 4B (TAIR:AT4G25850.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 54.3 bits (129), Expect = 8.6e-08
Identity = 33/66 (50.00%), Postives = 43/66 (65.15%), Query Frame = 0

Query: 4  SSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPLRICPPPVVVSLSLLKPATVQNKQ 63
          SS  YY  R  EGVPF+WEM PGTP NT P  E VP  + PPP ++SL L KP ++  ++
Sbjct: 16 SSVGYYDERMPEGVPFEWEMQPGTPINTQPR-EVVP-PLSPPPAMLSLGLPKP-SISIEE 75

Query: 64 PQFLLF 70
          P+  +F
Sbjct: 76 PKNFVF 78

BLAST of Cp4.1LG18g06130 vs. TAIR 10
Match: AT4G25850.2 (OSBP(oxysterol binding protein)-related protein 4B )

HSP 1 Score: 54.3 bits (129), Expect = 8.6e-08
Identity = 33/66 (50.00%), Postives = 43/66 (65.15%), Query Frame = 0

Query: 4  SSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPLRICPPPVVVSLSLLKPATVQNKQ 63
          SS  YY  R  EGVPF+WEM PGTP NT P  E VP  + PPP ++SL L KP ++  ++
Sbjct: 16 SSVGYYDERMPEGVPFEWEMQPGTPINTQPR-EVVP-PLSPPPAMLSLGLPKP-SISIEE 75

Query: 64 PQFLLF 70
          P+  +F
Sbjct: 76 PKNFVF 78

BLAST of Cp4.1LG18g06130 vs. TAIR 10
Match: AT3G56260.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40475.1). )

HSP 1 Score: 40.8 bits (94), Expect = 9.8e-04
Identity = 31/79 (39.24%), Postives = 42/79 (53.16%), Query Frame = 0

Query: 6  RSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPLRICPPPVVVSLSLLK-PAT---VQN 65
          RS YY   S  +PF WE  PGTPKN       +PL + PPP   S  +L  P T   V++
Sbjct: 15 RSSYYGGAS--IPFIWESRPGTPKNHLCSDSSLPLPLTPPPSYYSSGILSTPRTQSKVRS 74

Query: 66 KQPQFLLFRLWRKQSKSNN 81
          K  +FL F ++    +SN+
Sbjct: 75 KLSKFLSFSMFSDLRRSNH 91

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6589706.11.59e-8794.66hypothetical protein SDJN03_15129, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7023386.12.45e-8294.40hypothetical protein SDJN02_14411, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_038878338.11.10e-4961.90uncharacterized protein LOC120070597 [Benincasa hispida][more]
XP_004146363.12.54e-4458.39uncharacterized protein LOC101210202 [Cucumis sativus] >KGN65458.1 hypothetical ... [more]
XP_022930189.14.41e-4355.63uncharacterized protein LOC111436686 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
A0A0A0LUL81.23e-4458.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423160 PE=4 SV=1[more]
A0A6J1KZJ12.14e-4355.63uncharacterized protein LOC111499680 OS=Cucurbita maxima OX=3661 GN=LOC111499680... [more]
A0A6J1EQV32.14e-4355.63uncharacterized protein LOC111436686 OS=Cucurbita moschata OX=3662 GN=LOC1114366... [more]
A0A5D3CJV83.40e-4256.00Oxysterol-binding protein-related protein 4B-like OS=Cucumis melo var. makuwa OX... [more]
A0A7J9MS941.88e-1636.54Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_010158 PE=4... [more]
Match NameE-valueIdentityDescription
AT4G25845.18.6e-0850.00BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-rela... [more]
AT4G25850.28.6e-0850.00OSBP(oxysterol binding protein)-related protein 4B [more]
AT3G56260.29.8e-0439.24unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33257:SF6OXYSTEROL-BINDING 4B-LIKE PROTEIN-RELATEDcoord: 1..89
NoneNo IPR availablePANTHERPTHR33257OS05G0165500 PROTEINcoord: 1..89

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG18g06130.1Cp4.1LG18g06130.1mRNA