Cp4.1LG18g03010 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG18g03010
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG18: 4547678 .. 4547899 (+)
RNA-Seq ExpressionCp4.1LG18g03010
SyntenyCp4.1LG18g03010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGGCCTTCACTACAAATTCTTCCCCACCGACTTCCTCTACCCTCGTCCGCCCTCCTCCGACGTCGCCGACAACATCGTCTCCGTCGTGCCCCCCAAATCGGACGACTCCTCCGCCAACTCCAAGGGACGCCTCCACCGCCAACCCTTTCTTCACGCCAACAACAAACCTGCTGTTCAACCTATTGTCGCCCCAACTCCAAAGCCATCCAATTTCTAA

mRNA sequence

ATGGCAGGCCTTCACTACAAATTCTTCCCCACCGACTTCCTCTACCCTCGTCCGCCCTCCTCCGACGTCGCCGACAACATCGTCTCCGTCGTGCCCCCCAAATCGGACGACTCCTCCGCCAACTCCAAGGGACGCCTCCACCGCCAACCCTTTCTTCACGCCAACAACAAACCTGCTGTTCAACCTATTGTCGCCCCAACTCCAAAGCCATCCAATTTCTAA

Coding sequence (CDS)

ATGGCAGGCCTTCACTACAAATTCTTCCCCACCGACTTCCTCTACCCTCGTCCGCCCTCCTCCGACGTCGCCGACAACATCGTCTCCGTCGTGCCCCCCAAATCGGACGACTCCTCCGCCAACTCCAAGGGACGCCTCCACCGCCAACCCTTTCTTCACGCCAACAACAAACCTGCTGTTCAACCTATTGTCGCCCCAACTCCAAAGCCATCCAATTTCTAA

Protein sequence

MAGLHYKFFPTDFLYPRPPSSDVADNIVSVVPPKSDDSSANSKGRLHRQPFLHANNKPAVQPIVAPTPKPSNF
Homology
BLAST of Cp4.1LG18g03010 vs. NCBI nr
Match: KAG6581666.1 (putative galacturonosyltransferase 14, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119 bits (298), Expect = 2.36e-29
Identity = 60/70 (85.71%), Postives = 60/70 (85.71%), Query Frame = 0

Query: 4   LHYKFFPTDFLYPRPPSSDVADNIVSVVPPKSDDSSANSKGRLHRQPFLHANNKPAVQPI 63
           L YKFFPTDFLYPRPPSSDVADNIVSVVPPKSDDSSANSKGR      LHANNKPAVQPI
Sbjct: 507 LQYKFFPTDFLYPRPPSSDVADNIVSVVPPKSDDSSANSKGR------LHANNKPAVQPI 566

Query: 64  VAPTPKPSNF 73
           VAP P PSN 
Sbjct: 567 VAPAPNPSNI 570

BLAST of Cp4.1LG18g03010 vs. NCBI nr
Match: KGN59725.1 (hypothetical protein Csa_002570 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 8.09e-16
Identity = 46/76 (60.53%), Postives = 50/76 (65.79%), Query Frame = 0

Query: 1  MAGLHYKFFPTDFLYPRPPSS-DVADNIV-SVVPPKSDDSSANSKGRLHRQPFLHANNKP 60
          MAGL YKFFPTDFLYPRP SS DV +NIV SVVPPK DD +A  KG +H       NNK 
Sbjct: 1  MAGLQYKFFPTDFLYPRPSSSSDVPNNIVVSVVPPKPDDLTAKPKGAIHS-----TNNKA 60

Query: 61 AV--QPIVAPTPKPSN 72
          AV  +PIV     P N
Sbjct: 61 AVAVEPIVISRNNPKN 71

BLAST of Cp4.1LG18g03010 vs. NCBI nr
Match: KAA0057217.1 (hypothetical protein E6C27_scaffold280G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 4.92e-15
Identity = 47/81 (58.02%), Postives = 50/81 (61.73%), Query Frame = 0

Query: 1  MAGLHYKFFPTDFLYPRPPSS-DVADNIV-SVVPPKSDDSSANSKGRLHRQPFLHANNKP 60
          MAGL YKFFPTDFLYPRP SS DV +NIV SVVPPK DD +A  KG     P    NNK 
Sbjct: 1  MAGLQYKFFPTDFLYPRPSSSSDVPNNIVVSVVPPKPDDLTAKPKG-----PKSLTNNKA 60

Query: 61 AVQPIVAPT------PKPSNF 73
           V  +V P       PK SNF
Sbjct: 61 GVVVVVEPIVISRNIPKSSNF 76

BLAST of Cp4.1LG18g03010 vs. NCBI nr
Match: EXB93981.1 (hypothetical protein L484_015529 [Morus notabilis])

HSP 1 Score: 50.4 bits (119), Expect = 7.40e-06
Identity = 26/50 (52.00%), Postives = 32/50 (64.00%), Query Frame = 0

Query: 1  MAGLHYKFFPTDFLYPRPPSSDVAD-NIVSVVPPKSDDSSANSKGRLHRQ 49
          MAGL Y FFPTDFLYPRPPS+D    ++VSV   +SD +        H+Q
Sbjct: 1  MAGLQYNFFPTDFLYPRPPSADTTPKSVVSVQNRRSDVADEVVLDERHQQ 50

BLAST of Cp4.1LG18g03010 vs. NCBI nr
Match: KAF9679581.1 (hypothetical protein SADUNF_Sadunf06G0029700 [Salix dunnii])

HSP 1 Score: 50.1 bits (118), Expect = 3.53e-05
Identity = 28/74 (37.84%), Postives = 37/74 (50.00%), Query Frame = 0

Query: 1  MAGLHYKFFPTDFLYPRPPSSD---VADNIVSVVPPKSDDSSANSKGRLHRQPFLH-ANN 60
          MAGL Y FFPTDF YPRPP++D   V+  +  + P K D     S+       + H  +N
Sbjct: 1  MAGLQYYFFPTDFFYPRPPAADQESVSSPVQHIQPQKGDTKDRGSEQHRDMVRYKHDQSN 60

Query: 61 KPAVQPIVAPTPKP 70
           P +    A  P P
Sbjct: 61 LPQLSTSTALVPSP 74

BLAST of Cp4.1LG18g03010 vs. ExPASy TrEMBL
Match: A0A0A0LCI2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G841490 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.92e-16
Identity = 46/76 (60.53%), Postives = 50/76 (65.79%), Query Frame = 0

Query: 1  MAGLHYKFFPTDFLYPRPPSS-DVADNIV-SVVPPKSDDSSANSKGRLHRQPFLHANNKP 60
          MAGL YKFFPTDFLYPRP SS DV +NIV SVVPPK DD +A  KG +H       NNK 
Sbjct: 1  MAGLQYKFFPTDFLYPRPSSSSDVPNNIVVSVVPPKPDDLTAKPKGAIHS-----TNNKA 60

Query: 61 AV--QPIVAPTPKPSN 72
          AV  +PIV     P N
Sbjct: 61 AVAVEPIVISRNNPKN 71

BLAST of Cp4.1LG18g03010 vs. ExPASy TrEMBL
Match: A0A5A7URF0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G00510 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.38e-15
Identity = 47/81 (58.02%), Postives = 50/81 (61.73%), Query Frame = 0

Query: 1  MAGLHYKFFPTDFLYPRPPSS-DVADNIV-SVVPPKSDDSSANSKGRLHRQPFLHANNKP 60
          MAGL YKFFPTDFLYPRP SS DV +NIV SVVPPK DD +A  KG     P    NNK 
Sbjct: 1  MAGLQYKFFPTDFLYPRPSSSSDVPNNIVVSVVPPKPDDLTAKPKG-----PKSLTNNKA 60

Query: 61 AVQPIVAPT------PKPSNF 73
           V  +V P       PK SNF
Sbjct: 61 GVVVVVEPIVISRNIPKSSNF 76

BLAST of Cp4.1LG18g03010 vs. ExPASy TrEMBL
Match: W9RJF3 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_015529 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 3.58e-06
Identity = 26/50 (52.00%), Postives = 32/50 (64.00%), Query Frame = 0

Query: 1  MAGLHYKFFPTDFLYPRPPSSDVAD-NIVSVVPPKSDDSSANSKGRLHRQ 49
          MAGL Y FFPTDFLYPRPPS+D    ++VSV   +SD +        H+Q
Sbjct: 1  MAGLQYNFFPTDFLYPRPPSADTTPKSVVSVQNRRSDVADEVVLDERHQQ 50

BLAST of Cp4.1LG18g03010 vs. ExPASy TrEMBL
Match: W9RUL8 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_015527 PE=4 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 4.05e-05
Identity = 23/37 (62.16%), Postives = 27/37 (72.97%), Query Frame = 0

Query: 1  MAGLHYKFFPTDFLYPRPPSSDVAD-NIVSVVPPKSD 36
          MAGL Y FFPTDFLYPRPP +D    ++VSV   +SD
Sbjct: 1  MAGLQYNFFPTDFLYPRPPLADTTPKSVVSVQNRRSD 37

BLAST of Cp4.1LG18g03010 vs. ExPASy TrEMBL
Match: A0A6N2K8V5 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS12679 PE=4 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 6.84e-05
Identity = 29/74 (39.19%), Postives = 34/74 (45.95%), Query Frame = 0

Query: 1  MAGLHYKFFPTDFLYPRPPSSD---VADNIVSVVPPKSDDSSANSKGRLHRQPFLH-ANN 60
          MAGL Y FFPTDF YPRPP +D   V+     V P K D     S        + H  +N
Sbjct: 1  MAGLQYYFFPTDFFYPRPPPADQESVSSPAQHVQPQKGDTEDRGSDQHRAMVRYKHDQSN 60

Query: 61 KPAVQPIVAPTPKP 70
           P +    A  P P
Sbjct: 61 LPQLSTSTALVPSP 74

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6581666.12.36e-2985.71putative galacturonosyltransferase 14, partial [Cucurbita argyrosperma subsp. so... [more]
KGN59725.18.09e-1660.53hypothetical protein Csa_002570 [Cucumis sativus][more]
KAA0057217.14.92e-1558.02hypothetical protein E6C27_scaffold280G00510 [Cucumis melo var. makuwa][more]
EXB93981.17.40e-0652.00hypothetical protein L484_015529 [Morus notabilis][more]
KAF9679581.13.53e-0537.84hypothetical protein SADUNF_Sadunf06G0029700 [Salix dunnii][more]
Match NameE-valueIdentityDescription
A0A0A0LCI23.92e-1660.53Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G841490 PE=4 SV=1[more]
A0A5A7URF02.38e-1558.02Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
W9RJF33.58e-0652.00Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_015529 PE=4 SV=1[more]
W9RUL84.05e-0562.16Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_015527 PE=4 SV=1[more]
A0A6N2K8V56.84e-0539.19Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS12679 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..73

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG18g03010.1Cp4.1LG18g03010.1mRNA