Cp4.1LG18g00400 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG18g00400
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionNF-kappa-B-activating protein-like isoform X2
LocationCp4.1LG18: 891952 .. 893966 (-)
RNA-Seq ExpressionCp4.1LG18g00400
SyntenyCp4.1LG18g00400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATATATGAATAATCTAATACCTTGCCATACATATACCAAATATTAAATAACGAATCTACCTAATACTTGTACTATCGTTATAGTGATGTATGAATAATCTAATACATGTATCGATCAAATGAATCTAACTCCCATGACTTTTCAATTATTAACCAAGTACATGGATCTCTAATATACTTATATCTCACCGATTTATGTATCCATAAATACATGAAACAAATTTAATATCTTACTGCTTTTACTCGTATTAACATCCTTTTGATTATTACTTCAGAACCCTTTTGATTTATTACTTCAGAACATATTGTGATAAAGGAGATCTAGCTTCTAACACATGCATCCAATGTCTTAGATTTTTGCTTCAATGTATTTTTAGTCTTTGGTAGGCCTGATTTATCCCAACGCAATAGTGTAAGACATGTACCTTTGTATATTTTAAGAATGGGCATCAAGATAATATAAGTTTTCTAATCATTACGTGAGGCATAAAGACTCCAAGCATCATTGAGGCACAAGCCTCATGTATAAAAGTTCTAAACCACTTATAATCTAAAGAAGGCATAAGCTTTGAGGCTAAAAAATTTGAGCCATTCTAAGACAAGCCCTTTAGACTGAGGCTGAAAGTATCGATCTATTTGCCAAATGATCTTATTGTTTCTAGTCCTGCAATCTTTAGACTGCATCTATAGTTGGTTTTGTTTTTGGAGTGGTTTCTGAATTGGATATAATATGAGATGTTTCTGTGACCATTTACTGATTGATTCTTTGATATTGGAGTTGGGGTCCGTGTCATGATGATCGGGCTGTTGATTGGGAGTTGATGTATAGAAACAGCCAGAAGAGAGTAGTGGCCCTGTGCCGCTTTCCAAGGTTCCCTTCACAGCATTGTTTATTTTCAATTCATTCTTTTTCGACATCTCTTATCTCAACTTTGCAGTTTCTTCATCTAATTGAACAGTTTTTATTGCGGGAGAAGGATGATGGTACTCGGCGGAGTGCTGTCTCTGGCAAAAAGGTGAAAGATCCATCTCTTAGTTGTTTTTGCACATGTTTTGGAGTGCCTTTGACATGGCTAAGAACACTTTTCCCTTGACCAAAAGCACTTCTCACTCAAGTCGGTAACAAAGTTCTAGTTTTCATTATTATGATTACCTTTCAGATTTTGTTGAAACTTGACAAATCAAAGGAAGACAAAGCAGAGGAAAACAGAAGAAATGAATTGCTGAAATTCTTGAACTCTAGCTTTGACTAATGGCTGTGTATTAAGAATGAAGGAAAGAGGCATTATTAGCTCAGTTCAACCAACAGTTGTGTGACATTCAAGCCTGTGAACTTTCTTCTCCCTTTGAGGTTTTGATGCATATGGATCAAGATCTTGTTTTAATTCCTTATGGACAGGAATTGAAATTGAAATGACAAATGACTTAGCTTGTTTGATTTTGTTTGATGGGATGGAATGGGATGGGATGATGAATGATTTATTGTTAGTTATGATTAGATTGGGTAAAATGCTCAAGCGCTGCCTTGCCTAAGCATTGTTTTTACAATGTTCACTAAAAAAGTTTTCATGACAATCTCTCCATTGCCATTCTTCCACCCCGTGTTGCAGCTGAGAGACCACTTATGGCAGGAGGAGGTCGATCTTGCAGGGTTGAGATCGAACCAATTGATAGTCGACAAGTGATACTAACATCCAGTGACTGTCACGGTCATGTTTATCCAAGACGTGTTGTCCAAGTTGCATGTCCATTACATGCCAAAACTCTTGCCTTGTAACTTTATCGCTTTCCTTTATTGCTTTCATTGTGTATGATTTTCTTGTCTTTTTTAAGTGACTTCGGCAGAAACTTGTCTATGCATGAGACATGAAATACTCTAGACTGTAATGTAGGGGGATGCGACTAGTCGTCAACTTCTCACACTTAGATTTTGTATGACCATTCGGTGAAATCACGTTTAGGCTTGTCAGGCATGAATTGTCTCAAAATGTATTATAAGGGGATACGACTAGTTGT

mRNA sequence

ATATATGAATAATCTAATACCTTGCCATACATATACCAAATATTAAATAACGAATCTACCTAATACTTGTACTATCGTTATAGTGATGTATGAATAATCTAATACATGTATCGATCAAATGAATCTAACTCCCATGACTTTTCAATTATTAACCAAGTACATGGATCTCTAATATACTTATATCTCACCGATTTATGTATCCATAAATACATGAAACAAATTTAATATCTTACTGCTTTTACTCGTATTAACATCCTTTTGATTATTACTTCAGAACCCTTTTGATTTATTACTTCAGAACATATTGTGATAAAGGAGATCTAGCTTCTAACACATGCATCCAATGTCTTAGATTTTTGCTTCAATGTATTTTTAGTCTTTGGTAGGCCTGATTTATCCCAACGCAATAGTGTAAGACATGTACCTTTGTATATTTTAAGAATGGGCATCAAGATAATATAAGTTTTCTAATCATTACGTGAGGCATAAAGACTCCAAGCATCATTGAGGCACAAGCCTCATGTATAAAAGTTCTAAACCACTTATAATCTAAAGAAGGCATAAGCTTTGAGGCTAAAAAATTTGAGCCATTCTAAGACAAGCCCTTTAGACTGAGGCTGAAAGTATCGATCTATTTGCCAAATGATCTTATTGTTTCTAGTCCTGCAATCTTTAGACTGCATCTATAGTTGGTTTTGTTTTTGGAGTGGTTTCTGAATTGGATATAATATGAGATGTTTCTGTGACCATTTACTGATTGATTCTTTGATATTGGAGTTGGGGTCCGTGTCATGATGATCGGGCTGTTGATTGGGAGTTGATGTATAGAAACAGCCAGAAGAGAGTAGTGGCCCTGTGCCGCTTTCCAAGGTTCCCTTCACAGCATTGTTTATTTTCAATTCATTCTTTTTCGACATCTCTTATCTCAACTTTGCAGTTTCTTCATCTAATTGAACAGTTTTTATTGCGGGAGAAGGATGATGGTACTCGGCGGAGTGCTGTCTCTGGCAAAAAGATTTTGTTGAAACTTGACAAATCAAAGGAAGACAAAGCAGAGGAAAACAGAAGAAATGAATTGCTGAAATTCTTGAACTCTAGCTTTGACTAATGGCTGTGTATTAAGAATGAAGGAAAGAGGCATTATTAGCTCAGTTCAACCAACAGTTGTGTGACATTCAAGCCTGTGAACTTTCTTCTCCCTTTGAGGTTTTGATGCATATGGATCAAGATCTTGTTTTAATTCCTTATGGACAGGAATTGAAATTGAAATGACAAATGACTTAGCTTGTTTGATTTTGTTTGATGGGATGGAATGGGATGGGATGATGAATGATTTATTGTTAGTTATGATTAGATTGGGTAAAATGCTCAAGCGCTGCCTTGCCTAAGCATTGTTTTTACAATGTTCACTAAAAAAGTTTTCATGACAATCTCTCCATTGCCATTCTTCCACCCCGTGTTGCAGCTGAGAGACCACTTATGGCAGGAGGAGGTCGATCTTGCAGGGTTGAGATCGAACCAATTGATAGTCGACAAGTGATACTAACATCCAGTGACTGTCACGGTCATGTTTATCCAAGACGTGTTGTCCAAGTTGCATGTCCATTACATGCCAAAACTCTTGCCTTGTAACTTTATCGCTTTCCTTTATTGCTTTCATTGTGTATGATTTTCTTGTCTTTTTTAAGTGACTTCGGCAGAAACTTGTCTATGCATGAGACATGAAATACTCTAGACTGTAATGTAGGGGGATGCGACTAGTCGTCAACTTCTCACACTTAGATTTTGTATGACCATTCGGTGAAATCACGTTTAGGCTTGTCAGGCATGAATTGTCTCAAAATGTATTATAAGGGGATACGACTAGTTGT

Coding sequence (CDS)

ATGTATAGAAACAGCCAGAAGAGAGTAGTGGCCCTGTGCCGCTTTCCAAGGTTCCCTTCACAGCATTGTTTATTTTCAATTCATTCTTTTTCGACATCTCTTATCTCAACTTTGCAGTTTCTTCATCTAATTGAACAGTTTTTATTGCGGGAGAAGGATGATGGTACTCGGCGGAGTGCTGTCTCTGGCAAAAAGATTTTGTTGAAACTTGACAAATCAAAGGAAGACAAAGCAGAGGAAAACAGAAGAAATGAATTGCTGAAATTCTTGAACTCTAGCTTTGACTAA

Protein sequence

MYRNSQKRVVALCRFPRFPSQHCLFSIHSFSTSLISTLQFLHLIEQFLLREKDDGTRRSAVSGKKILLKLDKSKEDKAEENRRNELLKFLNSSFD
Homology
[Close]
BLAST of Cp4.1LG18g00400 vs. NCBI nr
Match: KAG7023995.1 (hypothetical protein SDJN02_15023, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 88.6 bits (218), Expect = 1.11e-20
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = 0 

Query: 47 FLLREKDDGTRRSAVSGKKILLKLDKSKEDKAEENRRNELLKFLNSSFD 95
          FL REKD+GTRRSAVSGKKILLKLDKSKEDKAEENRRNELLKFLNSSFD
Sbjct: 34 FLSREKDNGTRRSAVSGKKILLKLDKSKEDKAEENRRNELLKFLNSSFD 82

[Close]
BLAST of Cp4.1LG18g00400 vs. NCBI nr
Match: XP_038879353.1 (NKAP family protein [Benincasa hispida] >XP_038879354.1 NKAP family protein [Benincasa hispida] >XP_038879355.1 NKAP family protein [Benincasa hispida])

HSP 1 Score: 90.9 bits (224), Expect = 1.88e-20
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 44  IEQFLLREKDDGTRRSAVSGKKILLKLDKSKEDKAEENRRNELLKFLNSSFD 95
           + +FL REKDDGTRRSAVSGKKILLKLDKSKEDKAEEN+RNELLKFLNSSFD
Sbjct: 131 LSKFLAREKDDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD 182

[Close]
BLAST of Cp4.1LG18g00400 vs. NCBI nr
Match: XP_008450603.1 (PREDICTED: peptidyl-prolyl cis-trans isomerase G [Cucumis melo])

HSP 1 Score: 90.9 bits (224), Expect = 1.88e-20
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 44  IEQFLLREKDDGTRRSAVSGKKILLKLDKSKEDKAEENRRNELLKFLNSSFD 95
           + +FL REKDDGTRRSAVSGKKILLKLDKSKEDKAEEN+RNELLKFLNSSFD
Sbjct: 131 LSKFLAREKDDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD 182

[Close]
BLAST of Cp4.1LG18g00400 vs. NCBI nr
Match: XP_022136184.1 (serine/arginine-rich splicing factor 11 [Momordica charantia])

HSP 1 Score: 89.0 bits (219), Expect = 1.08e-19
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 0 

Query: 44  IEQFLLREKDDGTRRSAVSGKKILLKLDKSKEDKAEENRRNELLKFLNSSFD 95
           + +FL REKDDG RRSAVSGKKILLKLDKSKEDKAEEN+RNELLKFLNSSFD
Sbjct: 132 LSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD 183

[Close]
BLAST of Cp4.1LG18g00400 vs. NCBI nr
Match: XP_011659818.1 (NKAP family protein isoform X2 [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 1.39e-19
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 0 

Query: 44  IEQFLLREKDDGTRRSAVSGKKILLKLDKSKEDKAEENRRNELLKFLNSSFD 95
           + +FL REKDDGTRRSAVSGKKILLKLDKSKEDKAEE +RNELLKFLNSSFD
Sbjct: 128 LSKFLAREKDDGTRRSAVSGKKILLKLDKSKEDKAEETKRNELLKFLNSSFD 179

[Close]
BLAST of Cp4.1LG18g00400 vs. ExPASy TrEMBL
Match: A0A1S3BQ85 (peptidyl-prolyl cis-trans isomerase G OS=Cucumis melo OX=3656 GN=LOC103492142 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 9.09e-21
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 44  IEQFLLREKDDGTRRSAVSGKKILLKLDKSKEDKAEENRRNELLKFLNSSFD 95
           + +FL REKDDGTRRSAVSGKKILLKLDKSKEDKAEEN+RNELLKFLNSSFD
Sbjct: 131 LSKFLAREKDDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD 182

[Close]
BLAST of Cp4.1LG18g00400 vs. ExPASy TrEMBL
Match: A0A6J1C3K8 (serine/arginine-rich splicing factor 11 OS=Momordica charantia OX=3673 GN=LOC111007940 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.23e-20
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 0 

Query: 44  IEQFLLREKDDGTRRSAVSGKKILLKLDKSKEDKAEENRRNELLKFLNSSFD 95
           + +FL REKDDG RRSAVSGKKILLKLDKSKEDKAEEN+RNELLKFLNSSFD
Sbjct: 132 LSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD 183

[Close]
BLAST of Cp4.1LG18g00400 vs. ExPASy TrEMBL
Match: A0A0A0LVZ3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569230 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 6.74e-20
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 0 

Query: 44  IEQFLLREKDDGTRRSAVSGKKILLKLDKSKEDKAEENRRNELLKFLNSSFD 95
           + +FL REKDDGTRRSAVSGKKILLKLDKSKEDKAEE +RNELLKFLNSSFD
Sbjct: 128 LSKFLAREKDDGTRRSAVSGKKILLKLDKSKEDKAEETKRNELLKFLNSSFD 179

[Close]
BLAST of Cp4.1LG18g00400 vs. ExPASy TrEMBL
Match: A0A6J1I4D4 (NKAP family protein isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469042 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.00e-18
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 0 

Query: 44  IEQFLLREKDDGTRRSAVSGKKILLKLDKSKEDKAEENRRNELLKFLNSSFD 95
           + +FL RE DDGTRRSAVSGKKILLKLDKSKEDKAEEN+RNELLKFLNSSFD
Sbjct: 129 LSKFLARE-DDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD 179

[Close]
BLAST of Cp4.1LG18g00400 vs. ExPASy TrEMBL
Match: A0A6J1F093 (NKAP family protein isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111437872 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.00e-18
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 0 

Query: 44  IEQFLLREKDDGTRRSAVSGKKILLKLDKSKEDKAEENRRNELLKFLNSSFD 95
           + +FL RE DDGTRRSAVSGKKILLKLDKSKEDKAEEN+RNELLKFLNSSFD
Sbjct: 129 LSKFLARE-DDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD 179

[Close]
BLAST of Cp4.1LG18g00400 vs. TAIR 10
Match: AT5G27860.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: pollen tube; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 80.9 bits (198), Expect = 6.2e-16
Identity = 41/52 (78.85%), Postives = 48/52 (92.31%), Query Frame = 0 

Query: 44  IEQFLLREKDDGTRRSAVSGKKILLKLDKSKEDKAEENRRNELLKFLNSSFD 96
           + +FL R+KDDG RRSAVSGKKILLK+DKSKEDKA E++RNELLKFLN+SFD
Sbjct: 126 LSKFLNRDKDDGERRSAVSGKKILLKVDKSKEDKAAESKRNELLKFLNASFD 177

[Close]
BLAST of Cp4.1LG18g00400 vs. TAIR 10
Match: AT5G27860.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: pollen tube; Has 23049 Blast hits to 11981 proteins in 648 species: Archae - 2; Bacteria - 589; Metazoa - 13464; Fungi - 1977; Plants - 1635; Viruses - 89; Other Eukaryotes - 5293 (source: NCBI BLink). )

HSP 1 Score: 80.9 bits (198), Expect = 6.2e-16
Identity = 41/52 (78.85%), Postives = 48/52 (92.31%), Query Frame = 0 

Query: 44  IEQFLLREKDDGTRRSAVSGKKILLKLDKSKEDKAEENRRNELLKFLNSSFD 96
           + +FL R+KDDG RRSAVSGKKILLK+DKSKEDKA E++RNELLKFLN+SFD
Sbjct: 126 LSKFLNRDKDDGERRSAVSGKKILLKVDKSKEDKAAESKRNELLKFLNASFD 177

The following BLAST results are available for this feature:
BLAST of Cp4.1LG18g00400 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG18g00400 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7023995.11.11e-2095.92hypothetical protein SDJN02_15023, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_038879353.11.88e-2090.38NKAP family protein [Benincasa hispida] >XP_038879354.1 NKAP family protein [Ben... [more]
XP_008450603.11.88e-2090.38PREDICTED: peptidyl-prolyl cis-trans isomerase G [Cucumis melo][more]
XP_022136184.11.08e-1988.46serine/arginine-rich splicing factor 11 [Momordica charantia][more]
XP_011659818.11.39e-1988.46NKAP family protein isoform X2 [Cucumis sativus][more]
BLAST of Cp4.1LG18g00400 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BQ859.09e-2190.38peptidyl-prolyl cis-trans isomerase G OS=Cucumis melo OX=3656 GN=LOC103492142 PE... [more]
A0A6J1C3K85.23e-2088.46serine/arginine-rich splicing factor 11 OS=Momordica charantia OX=3673 GN=LOC111... [more]
A0A0A0LVZ36.74e-2088.46Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569230 PE=4 SV=1[more]
A0A6J1I4D43.00e-1888.46NKAP family protein isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469042 PE=4 ... [more]
A0A6J1F0933.00e-1888.46NKAP family protein isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111437872 PE=... [more]
BLAST of Cp4.1LG18g00400 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G27860.16.2e-1678.85unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G27860.26.2e-1678.85unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35760SI:CH211-22I13.2coord: 46..95

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG18g00400.1Cp4.1LG18g00400.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016853 isomerase activity