Cp4.1LG18g00310 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG18g00310
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description60S ribosomal protein L39
LocationCp4.1LG18: 547354 .. 548985 (+)
RNA-Seq ExpressionCp4.1LG18g00310
SyntenyCp4.1LG18g00310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCCTCGCATTTTGAATCGACACGTAGTGGGCCCATTTATTCGATGCCCAAACTCGATGAATACTCATGAACCCTAATTCATTATAATCTTGCTTCTCCTCCTCCTCTTTGCCGTTGATTATCTCCGCTTCTTTATCGGTAAAACTTCAATTTCTTGAAATTCTCATTACTTCATTTATGCAATCTTGTTCTTTGGGATTTTATATCAGCGAAACAACGCTGAAATCCAATATTACGATCATAGGGGTCCACGGATTGTCAGTCGTTATGTTCGATATTGTTCGCCTTACAATTTCTATACGTTTTTGTAACTTGTGTGTGTCATGCCTTTTATTGTCGATTTATAGAATGAATTTGGAATTATTATGCTAGCGAGAAAACAGTTTTTGATTGTTTAGAGATCGAGTTTGTCGGCCATTAATCTGAATATTGTGGAGCTGATGCGCTGTTTGTCATTTGTGTATTATTTGAAGTCTGGAATTATCGGTGTAGGGAGTGAAGTACTATTGATTTAGGATGTATATACTTCCTCACTGCAGTTTTCTTTGTTTTTGTTTTTGTTTTTGTTTTGTTAATTTGAGTGGAACAAATAGAACAGTTCTATGAGTAGAATAAAGTGACTCAATTCGACTGTATGAATCCTTAATTTTGTAAGGTACATACTAGTTCTGAGTTTATTGCTCGATTGGTAATTTCCGATATCTTTCAGTTCTTTTCTTCATAAACAGTGTTTCTGAATCAATGATTTTGGCGTGCAGTTTACAAATTTTAACTATATCATCGTTCATTTGATTATCATCGTTCAGTTTACGAATTTCCCTTTTTCAGTCTGGACTTCAATGTTGAATTATTCATTCTCTTTATGTTTTTTCATTTGGTTTATGTATTGATGGTGGTTCTTCCTTTATCAGGCAATTTGTCGCGGTTGTTGGTCGAATCCAGAATTTCGAAGATGGTAACTATTTCTTCTTTGAAGTGATATTCATGTGTTCCTTCTGATGATGTATTTAATTACATATTCAATTTAGTTTTGTTTTGGGAGATTGTGTTTTATGATGTGAGTTTTCTTTAATGTTTGCAGCCGTCTCACAAGACCTTCATAATCAAGAAGAAGTTGGCCAAGAAGATGAGACAGAACAGGCCTATTCCTCACTGGATACGGTTGAGGACTGACAACACCATCAGGTCTTTAGCTCTTTTCTTCCTTTTTTTTCATATTATCTCATTTCTGTTCTTCTCAGTTTTGAATTTAACATCATATGTTGATGTATACTTCAGGTACAATGCTAAGCGAAGGCACTGGCGCCGCACGAAGCTCGGATTTTGAGGTGTTTCTCTTGTGATTTGCTCTTCATCCTGTTTGGAATCTTTTTTTAACTGTTATGTTAGTTGTGGAGAAGACAAAGGATATAGAGCTAGAGTTTTGAACTTTTTCCTCTTAATTTAAGAACTTATTGAAGAGAAACTCACGTTAATCTTTAGATTTACTTCACTGTTCAATTTATATCTCCAGTAATTTCAATTATCAAGTTAATTTCAGTGTTGGTGCTTTTTCTTCTTACCTTAGTGTGGAGTTTTATTCTGGTCTGAATTGTTCAATGATTCATGTGGATGATACGAGTTTGGTGTCCT

mRNA sequence

AGCCTCGCATTTTGAATCGACACGTAGTGGGCCCATTTATTCGATGCCCAAACTCGATGAATACTCATGAACCCTAATTCATTATAATCTTGCTTCTCCTCCTCCTCTTTGCCGTTGATTATCTCCGCTTCTTTATCGGCAATTTGTCGCGGTTGTTGGTCGAATCCAGAATTTCGAAGATGCCGTCTCACAAGACCTTCATAATCAAGAAGAAGTTGGCCAAGAAGATGAGACAGAACAGGCCTATTCCTCACTGGATACGGTTGAGGACTGACAACACCATCAGGTACAATGCTAAGCGAAGGCACTGGCGCCGCACGAAGCTCGGATTTTGAGGTGTTTCTCTTGTGATTTGCTCTTCATCCTGTTTGGAATCTTTTTTTAACTGTTATGTTAGTTGTGGAGAAGACAAAGGATATAGAGCTAGAGTTTTGAACTTTTTCCTCTTAATTTAAGAACTTATTGAAGAGAAACTCACGTTAATCTTTAGATTTACTTCACTGTTCAATTTATATCTCCAGTAATTTCAATTATCAAGTTAATTTCAGTGTTGGTGCTTTTTCTTCTTACCTTAGTGTGGAGTTTTATTCTGGTCTGAATTGTTCAATGATTCATGTGGATGATACGAGTTTGGTGTCCT

Coding sequence (CDS)

ATGCCGTCTCACAAGACCTTCATAATCAAGAAGAAGTTGGCCAAGAAGATGAGACAGAACAGGCCTATTCCTCACTGGATACGGTTGAGGACTGACAACACCATCAGGTACAATGCTAAGCGAAGGCACTGGCGCCGCACGAAGCTCGGATTTTGA

Protein sequence

MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Homology
[Close]
BLAST of Cp4.1LG18g00310 vs. ExPASy Swiss-Prot
Match: P51424 (60S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 105.1 bits (261), Expect = 2.3e-22
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 0 

Query: 1  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHK+F+IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of Cp4.1LG18g00310 vs. ExPASy Swiss-Prot
Match: Q6KAJ8 (60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 103.6 bits (257), Expect = 6.7e-22
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 0 

Query: 1  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHKTF IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of Cp4.1LG18g00310 vs. ExPASy Swiss-Prot
Match: P51426 (60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B PE=3 SV=2)

HSP 1 Score: 103.6 bits (257), Expect = 6.7e-22
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 0 

Query: 1  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHKTF IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of Cp4.1LG18g00310 vs. ExPASy Swiss-Prot
Match: Q5SMI4 (60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 6.7e-22
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 0 

Query: 1  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHKTF IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of Cp4.1LG18g00310 vs. ExPASy Swiss-Prot
Match: P51425 (60S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 6.7e-22
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 0 

Query: 1  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHKTF IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of Cp4.1LG18g00310 vs. NCBI nr
Match: XP_020414429.1 (60S ribosomal protein L39-1 [Prunus persica] >XP_021820892.1 60S ribosomal protein L39-1 [Prunus avium] >XP_022135168.1 60S ribosomal protein L39-1-like [Momordica charantia] >XP_022961506.1 60S ribosomal protein L39-1 [Cucurbita moschata] >XP_023516431.1 60S ribosomal protein L39-1 [Cucurbita pepo subsp. pepo] >XP_034198821.1 60S ribosomal protein L39-1 [Prunus dulcis] >ONI32872.1 hypothetical protein PRUPE_1G390600 [Prunus persica])

HSP 1 Score: 108 bits (269), Expect = 1.36e-29
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 1  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51
          MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of Cp4.1LG18g00310 vs. NCBI nr
Match: XP_008220702.1 (PREDICTED: 60S ribosomal protein L39-1 [Prunus mume])

HSP 1 Score: 107 bits (268), Expect = 1.94e-29
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 1  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51
          MPSHKTF+IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFVIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of Cp4.1LG18g00310 vs. NCBI nr
Match: XP_002285383.1 (PREDICTED: 60S ribosomal protein L39 [Vitis vinifera] >XP_007011758.1 PREDICTED: 60S ribosomal protein L39 [Theobroma cacao] >XP_015577456.1 60S ribosomal protein L39 [Ricinus communis] >XP_015583470.1 60S ribosomal protein L39 [Ricinus communis] >XP_015884724.1 60S ribosomal protein L39 [Ziziphus jujuba] >XP_015893232.1 60S ribosomal protein L39 [Ziziphus jujuba] >XP_021277206.1 60S ribosomal protein L39 [Herrania umbratica] >XP_021615205.1 60S ribosomal protein L39 [Manihot esculenta] >XP_021634643.1 60S ribosomal protein L39 [Manihot esculenta] >XP_022730370.1 60S ribosomal protein L39-like [Durio zibethinus] >XP_022750305.1 60S ribosomal protein L39-like [Durio zibethinus] >XP_031256841.1 60S ribosomal protein L39 [Pistacia vera] >XP_031274686.1 60S ribosomal protein L39 [Pistacia vera] >XP_031279727.1 60S ribosomal protein L39 [Pistacia vera] >XP_031280458.1 60S ribosomal protein L39 [Pistacia vera] >XP_034682698.1 60S ribosomal protein L39-like [Vitis riparia] >XP_039131172.1 60S ribosomal protein L39 [Dioscorea cayenensis subsp. rotundata] >PIA63122.1 hypothetical protein AQUCO_00200862v1 [Aquilegia coerulea] >TXG60800.1 hypothetical protein EZV62_012163 [Acer yangbiense] >EOY29377.1 Ribosomal protein L39 family protein [Theobroma cacao] >OAY31791.1 hypothetical protein MANES_14G140700v8 [Manihot esculenta] >OAY46933.1 hypothetical protein MANES_06G039600v8 [Manihot esculenta])

HSP 1 Score: 107 bits (267), Expect = 2.76e-29
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 1  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51
          MPSHKTFIIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFIIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of Cp4.1LG18g00310 vs. NCBI nr
Match: XP_022131343.1 (60S ribosomal protein L39-1 [Momordica charantia])

HSP 1 Score: 107 bits (266), Expect = 3.92e-29
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 1  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51
          MPSHKTF+IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of Cp4.1LG18g00310 vs. NCBI nr
Match: KMZ57025.1 (60S ribosomal protein L39 [Zostera marina] >KMZ57759.1 60S ribosomal protein L39 [Zostera marina])

HSP 1 Score: 107 bits (266), Expect = 3.92e-29
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 1  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51
          MPSHKTF+IKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFVIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of Cp4.1LG18g00310 vs. ExPASy TrEMBL
Match: A0A6P5T1X5 (60S ribosomal protein L39-1 OS=Prunus avium OX=42229 GN=LOC110762551 PE=3 SV=1)

HSP 1 Score: 108 bits (269), Expect = 6.61e-30
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 1  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51
          MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of Cp4.1LG18g00310 vs. ExPASy TrEMBL
Match: A0A6J1C421 (60S ribosomal protein L39-1-like OS=Momordica charantia OX=3673 GN=LOC111007203 PE=3 SV=1)

HSP 1 Score: 108 bits (269), Expect = 6.61e-30
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 1  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51
          MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of Cp4.1LG18g00310 vs. ExPASy TrEMBL
Match: A0A6J1HAJ4 (60S ribosomal protein L39-1 OS=Cucurbita moschata OX=3662 GN=LOC111462063 PE=3 SV=1)

HSP 1 Score: 108 bits (269), Expect = 6.61e-30
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 1  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51
          MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of Cp4.1LG18g00310 vs. ExPASy TrEMBL
Match: A0A251RA49 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G390600 PE=3 SV=1)

HSP 1 Score: 108 bits (269), Expect = 6.61e-30
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 1  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51
          MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of Cp4.1LG18g00310 vs. ExPASy TrEMBL
Match: A0A438KE59 (60S ribosomal protein L39-3 OS=Vitis vinifera OX=29760 GN=RPL39C_1 PE=3 SV=1)

HSP 1 Score: 107 bits (267), Expect = 1.33e-29
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 1  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51
          MPSHKTFIIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFIIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of Cp4.1LG18g00310 vs. TAIR 10
Match: AT4G31985.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 105.1 bits (261), Expect = 1.6e-23
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 0 

Query: 1  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHK+F+IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of Cp4.1LG18g00310 vs. TAIR 10
Match: AT3G02190.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 100.1 bits (248), Expect = 5.3e-22
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 0 

Query: 1  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHK+F+IKKKL KKMRQNRPIP+WIRLRTDN IRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of Cp4.1LG18g00310 vs. TAIR 10
Match: AT2G25210.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 90.9 bits (224), Expect = 3.2e-19
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 0 

Query: 8  IIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          +IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 44

The following BLAST results are available for this feature:
BLAST of Cp4.1LG18g00310 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P514242.3e-2294.1260S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2[more]
Q6KAJ86.7e-2294.1260S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A P... [more]
P514266.7e-2294.1260S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B P... [more]
Q5SMI46.7e-2294.1260S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C P... [more]
P514256.7e-2294.1260S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1[more]
BLAST of Cp4.1LG18g00310 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_020414429.11.36e-29100.0060S ribosomal protein L39-1 [Prunus persica] >XP_021820892.1 60S ribosomal prote... [more]
XP_008220702.11.94e-2998.04PREDICTED: 60S ribosomal protein L39-1 [Prunus mume][more]
XP_002285383.12.76e-2998.04PREDICTED: 60S ribosomal protein L39 [Vitis vinifera] >XP_007011758.1 PREDICTED:... [more]
XP_022131343.13.92e-2998.0460S ribosomal protein L39-1 [Momordica charantia][more]
KMZ57025.13.92e-2996.0860S ribosomal protein L39 [Zostera marina] >KMZ57759.1 60S ribosomal protein L39... [more]
BLAST of Cp4.1LG18g00310 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6P5T1X56.61e-30100.0060S ribosomal protein L39-1 OS=Prunus avium OX=42229 GN=LOC110762551 PE=3 SV=1[more]
A0A6J1C4216.61e-30100.0060S ribosomal protein L39-1-like OS=Momordica charantia OX=3673 GN=LOC111007203 ... [more]
A0A6J1HAJ46.61e-30100.0060S ribosomal protein L39-1 OS=Cucurbita moschata OX=3662 GN=LOC111462063 PE=3 S... [more]
A0A251RA496.61e-30100.00Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G390600 PE=3 SV=1[more]
A0A438KE591.33e-2998.0460S ribosomal protein L39-3 OS=Vitis vinifera OX=29760 GN=RPL39C_1 PE=3 SV=1[more]
BLAST of Cp4.1LG18g00310 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G31985.11.6e-2394.12Ribosomal protein L39 family protein [more]
AT3G02190.15.3e-2290.20Ribosomal protein L39 family protein [more]
AT2G25210.13.2e-1995.45Ribosomal protein L39 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000077Ribosomal protein L39ePFAMPF00832Ribosomal_L39coord: 9..49
e-value: 1.8E-22
score: 78.7
IPR000077Ribosomal protein L39eHAMAPMF_00629Ribosomal_L39ecoord: 1..51
score: 12.761067
IPR023626Ribosomal protein L39e domain superfamilyGENE3D1.10.1620.10Ribosomal protein L39ecoord: 1..51
e-value: 1.5E-29
score: 103.7
IPR023626Ribosomal protein L39e domain superfamilySUPERFAMILY48662Ribosomal protein L39ecoord: 3..50
NoneNo IPR availablePANTHERPTHR19970:SF31SUBFAMILY NOT NAMEDcoord: 1..51
NoneNo IPR availablePANTHERPTHR19970RIBOSOMAL PROTEIN L39Ecoord: 1..51
IPR020083Ribosomal protein L39e, conserved sitePROSITEPS00051RIBOSOMAL_L39Ecoord: 30..46

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG18g00310.1Cp4.1LG18g00310.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003735 structural constituent of ribosome