Cp4.1LG17g11020 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG17g11020
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	spindle and kinetochore-associated protein 1 homolog
Location	Cp4.1LG17: 8395859 .. 8396899 (+)
RNA-Seq Expression	Cp4.1LG17g11020
Synteny	Cp4.1LG17g11020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTTGAAAGAAGCTGGTTCATTGCTTAATAATCTAGTTGCTGCTTTCAATGGTCGGATCGCGGAGCTCCAAGATCTCGTAATTGCACGAAATAGTGAGCGGAAATATTTAAGCCTTTAGTCTTTTTCTTGGCTATAATTCTATTTGATGCATAAATGTCACCACTGCGGGATTGACTTCTGTTGTCGTAGTGTATCCGGCGAGTTGTATCCCTGATTTGTCGGCAGTTGATGCATCATTGAAGGCAATGGAATTGCAGGTGCAGGCAATCAAGAACCAGTTACAAGAAGAAGCTGAAGCAATTCCCAAAGCGAAAGTATATTCGCCCCTCCCTCTTTAGACCATCCTTCTGCTATATTAAATTCTGTTTGCTCCTTTTCCTCTGCATCATTAGGAAACCATAAGAAATTAGTGAAAGAATGTTAGAAATGTGTTTACCTCAAATAAATAACATATTCAGTCTGAAAGAGTTTTGAAAAAATTGGGAGAATTGATAACCCAAAAAACTCGAGCAATAAAATTCCCATTCCTTGATCTGCAAAATACTTTTTAGATTTATAATTACTGATAAGTTAATTACCGATTATTATCATTCACATGACGCTATGTTTCTCTTTGTAAATTTTGCTGAGCTTTACAGAGTAGTGGGTTTAACAGTTTTAGTGCTGTTTTGAGTGGCTAAATTATTGCTTTGTTGATGTGCAACATAACATTTTTCACCAAATTCTGCAGAAACTTATCGAAGCATCTCTGAAGCAGCAGAAGAGGTTAGAAAGTATATCACTTCACGTTCCCTCATATCATATTCAGTCCGAAAGAGTTTCTGCGTTGAACTTAAATACCAGGTAACTAATTTGTTTAAAATTTTATAGGAATTCCATGATCTGAACCCCAGCTTCAAGTTTTATTGTTAAGGTAGTTGTGATTCATGAAAAGGTTTTATGGCCTTCTGTTTTCAGTCTTTGTTCACAGGCCAAAAAAACTGATACTGAATTGGGCTCCCTAGATGCTGAGAAAGTGATTTCAGTCTTACCTAAG

mRNA sequence

ATGGACTTGAAAGAAGCTGGTTCATTGCTTAATAATCTAGTTGCTGCTTTCAATGGTCGGATCGCGGAGCTCCAAGATCTCGTAATTGCACGAAATATGTATCCGGCGAGTTGTATCCCTGATTTGTCGGCAGTTGATGCATCATTGAAGGCAATGGAATTGCAGGTGCAGGCAATCAAGAACCAGTTACAAGAAGAAGCTGAAGCAATTCCCAAAGCGAAAAAACTTATCGAAGCATCTCTGAAGCAGCAGAAGAGGTTAGAAAGTATATCACTTCACGTTCCCTCATATCATATTCAGTCCGAAAGAGTTTCTGCGTTGAACTTAAATACCAGTCTTTGTTCACAGGCCAAAAAAACTGATACTGAATTGGGCTCCCTAGATGCTGAGAAAGTGATTTCAGTCTTACCTAAG

Coding sequence (CDS)

ATGGACTTGAAAGAAGCTGGTTCATTGCTTAATAATCTAGTTGCTGCTTTCAATGGTCGGATCGCGGAGCTCCAAGATCTCGTAATTGCACGAAATATGTATCCGGCGAGTTGTATCCCTGATTTGTCGGCAGTTGATGCATCATTGAAGGCAATGGAATTGCAGGTGCAGGCAATCAAGAACCAGTTACAAGAAGAAGCTGAAGCAATTCCCAAAGCGAAAAAACTTATCGAAGCATCTCTGAAGCAGCAGAAGAGGTTAGAAAGTATATCACTTCACGTTCCCTCATATCATATTCAGTCCGAAAGAGTTTCTGCGTTGAACTTAAATACCAGTCTTTGTTCACAGGCCAAAAAAACTGATACTGAATTGGGCTCCCTAGATGCTGAGAAAGTGATTTCAGTCTTACCTAAG

Protein sequence

MDLKEAGSLLNNLVAAFNGRIAELQDLVIARNMYPASCIPDLSAVDASLKAMELQVQAIKNQLQEEAEAIPKAKKLIEASLKQQKRLESISLHVPSYHIQSERVSALNLNTSLCSQAKKTDTELGSLDAEKVISVLPK

Homology

[Close]

BLAST of Cp4.1LG17g11020 vs. ExPASy Swiss-Prot
Match: Q9LZZ7 (Spindle and kinetochore-associated protein 1 homolog OS=Arabidopsis thaliana OX=3702 GN=At3g60660 PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 8.2e-30
Identity = 76/141 (53.90%), Postives = 103/141 (73.05%), Query Frame = 0


Query: 1   MDLKEAGSLLNNLVAAFNGRIAELQDLVIARNMYPASCIPDLSAVDASLKAMELQVQAIK 60
           M+  +AGS L++L+A+FN RI ELQ+LVIARNMYPAS IPDLSA+D +L +MELQVQ+IK
Sbjct: 1   MEGNQAGSSLDSLIASFNKRIGELQELVIARNMYPASTIPDLSAIDTALSSMELQVQSIK 60

Query: 61  NQLQEEAEAIPKAKKLIEASLKQQKRLESISLHVPSYHIQSERVSALNLNTSLCSQAKK- 120
           ++L+EE EAIPKAKKLIEASLKQQ +L+ +S++ PS+      +   +LN  L  +  K 
Sbjct: 61  DRLREETEAIPKAKKLIEASLKQQGKLQKMSIYAPSHFPDKATMLNSDLNRCLLQENAKQ 120

Query: 121 --TDTELGSLDAEKVISVLPK 139
               + L SL  ++  +VLPK
Sbjct: 121 YEQHSTLSSLKFDEEAAVLPK 141

[Close]

BLAST of Cp4.1LG17g11020 vs. ExPASy Swiss-Prot
Match: B8B624 (Spindle and kinetochore-associated protein 1 homolog OS=Oryza sativa subsp. indica OX=39946 GN=OsI_26011 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.7e-22
Identity = 57/112 (50.89%), Postives = 80/112 (71.43%), Query Frame = 0


Query: 2   DLKEAGSLLNNLVAAFNGRIAELQDLVIARNMYPASCIPDLSAVDASLKAMELQVQAIKN 61
           D    G  L+ + AAF  R+ ELQ+LV+ARNMYPA+ IPDL+AVD SL AME Q+QA++ 
Sbjct: 5   DASRLGESLDAVSAAFQSRVMELQELVLARNMYPATAIPDLAAVDVSLTAMEAQLQAVRR 64

Query: 62  QLQEEAEAIPKAKKLIEASLKQQKRLESISLHVPSYHIQSERVSALNLNTSL 114
           +LQEE EA PKAKKL++ SLKQQ+RL+ +  ++P+   +    + L  N+S+
Sbjct: 65  RLQEEREAFPKAKKLVQQSLKQQRRLQLMLANMPTGMREDVFATPLEHNSSM 116

[Close]

BLAST of Cp4.1LG17g11020 vs. ExPASy Swiss-Prot
Match: Q7XAM0 (Spindle and kinetochore-associated protein 1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0484500 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.7e-22
Identity = 57/112 (50.89%), Postives = 80/112 (71.43%), Query Frame = 0


Query: 2   DLKEAGSLLNNLVAAFNGRIAELQDLVIARNMYPASCIPDLSAVDASLKAMELQVQAIKN 61
           D    G  L+ + AAF  R+ ELQ+LV+ARNMYPA+ IPDL+AVD SL AME Q+QA++ 
Sbjct: 5   DASRLGESLDAVSAAFQSRVMELQELVLARNMYPATAIPDLAAVDVSLTAMEAQLQAVRR 64

Query: 62  QLQEEAEAIPKAKKLIEASLKQQKRLESISLHVPSYHIQSERVSALNLNTSL 114
           +LQEE EA PKAKKL++ SLKQQ+RL+ +  ++P+   +    + L  N+S+
Sbjct: 65  RLQEEREAFPKAKKLVQQSLKQQRRLQLMLANMPTGMREDVFATPLEHNSSM 116

[Close]

BLAST of Cp4.1LG17g11020 vs. ExPASy Swiss-Prot
Match: B4FGS2 (Spindle and kinetochore-associated protein 1 homolog OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.6e-17
Identity = 45/87 (51.72%), Postives = 69/87 (79.31%), Query Frame = 0


Query: 10 LNNLVAAFNGRIAELQDLVIARNMYPASCIPDLSAVDASLKAMELQVQAIKNQLQEEAEA 69
          L+ + AAF  ++ ELQDLV+AR+M+PA+ +PDL+ VDA + AME QV+ I  +LQEE +A
Sbjct: 13 LDAVAAAFKSQVMELQDLVLARSMFPATALPDLANVDALVTAMESQVETISRRLQEELDA 72

Query: 70 IPKAKKLIEASLKQQKRLESISLHVPS 97
          IPKAKKL++ SLK++++L+ +  ++PS
Sbjct: 73 IPKAKKLVQRSLKEEEKLQHMLANLPS 99

[Close]

BLAST of Cp4.1LG17g11020 vs. NCBI nr
Match: XP_023515285.1 (spindle and kinetochore-associated protein 1 homolog [Cucurbita pepo subsp. pepo] >XP_023515286.1 spindle and kinetochore-associated protein 1 homolog [Cucurbita pepo subsp. pepo] >XP_023515287.1 spindle and kinetochore-associated protein 1 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 255 bits (651), Expect = 2.82e-83
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MDLKEAGSLLNNLVAAFNGRIAELQDLVIARNMYPASCIPDLSAVDASLKAMELQVQAIK 60
           MDLKEAGSLLNNLVAAFNGRIAELQDLVIARNMYPASCIPDLSAVDASLKAMELQVQAIK
Sbjct: 1   MDLKEAGSLLNNLVAAFNGRIAELQDLVIARNMYPASCIPDLSAVDASLKAMELQVQAIK 60

Query: 61  NQLQEEAEAIPKAKKLIEASLKQQKRLESISLHVPSYHIQSERVSALNLNTSLCSQAKKT 120
           NQLQEEAEAIPKAKKLIEASLKQQKRLESISLHVPSYHIQSERVSALNLNTSLCSQAKKT
Sbjct: 61  NQLQEEAEAIPKAKKLIEASLKQQKRLESISLHVPSYHIQSERVSALNLNTSLCSQAKKT 120

Query: 121 DTELGSLDAEKVISVLPK 138
           DTELGSLDAEKVISVLPK
Sbjct: 121 DTELGSLDAEKVISVLPK 138

[Close]

BLAST of Cp4.1LG17g11020 vs. NCBI nr
Match: XP_023004833.1 (spindle and kinetochore-associated protein 1 homolog [Cucurbita maxima] >XP_023004834.1 spindle and kinetochore-associated protein 1 homolog [Cucurbita maxima] >XP_023004835.1 spindle and kinetochore-associated protein 1 homolog [Cucurbita maxima] >XP_023004837.1 spindle and kinetochore-associated protein 1 homolog [Cucurbita maxima] >XP_023004838.1 spindle and kinetochore-associated protein 1 homolog [Cucurbita maxima] >XP_023004839.1 spindle and kinetochore-associated protein 1 homolog [Cucurbita maxima])

HSP 1 Score: 248 bits (634), Expect = 1.08e-80
Identity = 134/138 (97.10%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 1   MDLKEAGSLLNNLVAAFNGRIAELQDLVIARNMYPASCIPDLSAVDASLKAMELQVQAIK 60
           MDLKEAGSLLNNLVAAFNGRIAELQDLVIARNMYPASCIPDLSAVDASLKAMELQVQAIK
Sbjct: 1   MDLKEAGSLLNNLVAAFNGRIAELQDLVIARNMYPASCIPDLSAVDASLKAMELQVQAIK 60

Query: 61  NQLQEEAEAIPKAKKLIEASLKQQKRLESISLHVPSYHIQSERVSALNLNTSLCSQAKKT 120
           NQLQEEAEAIPKAKKLIEASLKQQKRLESISLHVPSYHIQ +RVSALNLNTSLCSQAKKT
Sbjct: 61  NQLQEEAEAIPKAKKLIEASLKQQKRLESISLHVPSYHIQPQRVSALNLNTSLCSQAKKT 120

Query: 121 DTELGSLDAEKVISVLPK 138
           DTELGSL+AE VISVLPK
Sbjct: 121 DTELGSLEAENVISVLPK 138

[Close]

BLAST of Cp4.1LG17g11020 vs. NCBI nr
Match: XP_022960263.1 (spindle and kinetochore-associated protein 1 homolog [Cucurbita moschata] >XP_022960264.1 spindle and kinetochore-associated protein 1 homolog [Cucurbita moschata] >XP_022960265.1 spindle and kinetochore-associated protein 1 homolog [Cucurbita moschata] >XP_022960266.1 spindle and kinetochore-associated protein 1 homolog [Cucurbita moschata] >XP_022960267.1 spindle and kinetochore-associated protein 1 homolog [Cucurbita moschata] >XP_022960268.1 spindle and kinetochore-associated protein 1 homolog [Cucurbita moschata])

HSP 1 Score: 247 bits (630), Expect = 4.37e-80
Identity = 133/138 (96.38%), Postives = 135/138 (97.83%), Query Frame = 0


Query: 1   MDLKEAGSLLNNLVAAFNGRIAELQDLVIARNMYPASCIPDLSAVDASLKAMELQVQAIK 60
           MDLKEAGSLLNNLVAAFNGRIAELQDLVIARNMYPASCIPDLSAVDASLKAMELQVQAIK
Sbjct: 1   MDLKEAGSLLNNLVAAFNGRIAELQDLVIARNMYPASCIPDLSAVDASLKAMELQVQAIK 60

Query: 61  NQLQEEAEAIPKAKKLIEASLKQQKRLESISLHVPSYHIQSERVSALNLNTSLCSQAKKT 120
           NQLQEEAEAIPKAKKLIEASLKQQKRLESISLHVPSYHIQ ERVSALNLNTS CSQAKKT
Sbjct: 61  NQLQEEAEAIPKAKKLIEASLKQQKRLESISLHVPSYHIQPERVSALNLNTSFCSQAKKT 120

Query: 121 DTELGSLDAEKVISVLPK 138
           DT+LGSL+AE VISVLPK
Sbjct: 121 DTQLGSLEAENVISVLPK 138

[Close]

BLAST of Cp4.1LG17g11020 vs. NCBI nr
Match: KAG7025411.1 (Spindle and kinetochore-associated protein 1-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 247 bits (630), Expect = 1.03e-79
Identity = 133/138 (96.38%), Postives = 135/138 (97.83%), Query Frame = 0


Query: 1   MDLKEAGSLLNNLVAAFNGRIAELQDLVIARNMYPASCIPDLSAVDASLKAMELQVQAIK 60
           MDLKEAGSLLNNLVAAFNGRIAELQDLVIARNMYPASCIPDLSAVDASLKAMELQVQAIK
Sbjct: 1   MDLKEAGSLLNNLVAAFNGRIAELQDLVIARNMYPASCIPDLSAVDASLKAMELQVQAIK 60

Query: 61  NQLQEEAEAIPKAKKLIEASLKQQKRLESISLHVPSYHIQSERVSALNLNTSLCSQAKKT 120
           NQLQEEAEAIPKAKKLIEASLKQQKRLESISLHVPSYHIQ ERVSALNLNTS CSQAKKT
Sbjct: 61  NQLQEEAEAIPKAKKLIEASLKQQKRLESISLHVPSYHIQPERVSALNLNTSFCSQAKKT 120

Query: 121 DTELGSLDAEKVISVLPK 138
           DT+LGSL+AE VISVLPK
Sbjct: 121 DTQLGSLEAENVISVLPK 138

[Close]

BLAST of Cp4.1LG17g11020 vs. NCBI nr
Match: XP_022154349.1 (spindle and kinetochore-associated protein 1 homolog [Momordica charantia] >XP_022154357.1 spindle and kinetochore-associated protein 1 homolog [Momordica charantia] >XP_022154365.1 spindle and kinetochore-associated protein 1 homolog [Momordica charantia])

HSP 1 Score: 223 bits (568), Expect = 1.17e-70
Identity = 120/138 (86.96%), Postives = 129/138 (93.48%), Query Frame = 0


Query: 1   MDLKEAGSLLNNLVAAFNGRIAELQDLVIARNMYPASCIPDLSAVDASLKAMELQVQAIK 60
           MD KEAGSLL+NL+AAFN RIAELQDLVIARNMYPASC+PDLSAVDASLKAMELQVQAIK
Sbjct: 1   MDAKEAGSLLDNLIAAFNSRIAELQDLVIARNMYPASCVPDLSAVDASLKAMELQVQAIK 60

Query: 61  NQLQEEAEAIPKAKKLIEASLKQQKRLESISLHVPSYHIQSERVSALNLNTSLCSQAKKT 120
           NQL+EEAEAIPKAKKLIEASLKQQKRLESISLHVP+Y IQ ERVSALNLNTSLCS+A  +
Sbjct: 61  NQLREEAEAIPKAKKLIEASLKQQKRLESISLHVPTYQIQPERVSALNLNTSLCSEANNS 120

Query: 121 DTELGSLDAEKVISVLPK 138
            T LGSL+A+ VISVLPK
Sbjct: 121 GTGLGSLEAKDVISVLPK 138

[Close]

BLAST of Cp4.1LG17g11020 vs. ExPASy TrEMBL
Match: A0A6J1KRI3 (spindle and kinetochore-associated protein 1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111498018 PE=3 SV=1)

HSP 1 Score: 248 bits (634), Expect = 5.22e-81
Identity = 134/138 (97.10%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 1   MDLKEAGSLLNNLVAAFNGRIAELQDLVIARNMYPASCIPDLSAVDASLKAMELQVQAIK 60
           MDLKEAGSLLNNLVAAFNGRIAELQDLVIARNMYPASCIPDLSAVDASLKAMELQVQAIK
Sbjct: 1   MDLKEAGSLLNNLVAAFNGRIAELQDLVIARNMYPASCIPDLSAVDASLKAMELQVQAIK 60

Query: 61  NQLQEEAEAIPKAKKLIEASLKQQKRLESISLHVPSYHIQSERVSALNLNTSLCSQAKKT 120
           NQLQEEAEAIPKAKKLIEASLKQQKRLESISLHVPSYHIQ +RVSALNLNTSLCSQAKKT
Sbjct: 61  NQLQEEAEAIPKAKKLIEASLKQQKRLESISLHVPSYHIQPQRVSALNLNTSLCSQAKKT 120

Query: 121 DTELGSLDAEKVISVLPK 138
           DTELGSL+AE VISVLPK
Sbjct: 121 DTELGSLEAENVISVLPK 138

[Close]

BLAST of Cp4.1LG17g11020 vs. ExPASy TrEMBL
Match: A0A6J1H8L1 (spindle and kinetochore-associated protein 1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111461060 PE=3 SV=1)

HSP 1 Score: 247 bits (630), Expect = 2.12e-80
Identity = 133/138 (96.38%), Postives = 135/138 (97.83%), Query Frame = 0


Query: 1   MDLKEAGSLLNNLVAAFNGRIAELQDLVIARNMYPASCIPDLSAVDASLKAMELQVQAIK 60
           MDLKEAGSLLNNLVAAFNGRIAELQDLVIARNMYPASCIPDLSAVDASLKAMELQVQAIK
Sbjct: 1   MDLKEAGSLLNNLVAAFNGRIAELQDLVIARNMYPASCIPDLSAVDASLKAMELQVQAIK 60

Query: 61  NQLQEEAEAIPKAKKLIEASLKQQKRLESISLHVPSYHIQSERVSALNLNTSLCSQAKKT 120
           NQLQEEAEAIPKAKKLIEASLKQQKRLESISLHVPSYHIQ ERVSALNLNTS CSQAKKT
Sbjct: 61  NQLQEEAEAIPKAKKLIEASLKQQKRLESISLHVPSYHIQPERVSALNLNTSFCSQAKKT 120

Query: 121 DTELGSLDAEKVISVLPK 138
           DT+LGSL+AE VISVLPK
Sbjct: 121 DTQLGSLEAENVISVLPK 138

[Close]

BLAST of Cp4.1LG17g11020 vs. ExPASy TrEMBL
Match: A0A6J1DLG8 (spindle and kinetochore-associated protein 1 homolog OS=Momordica charantia OX=3673 GN=LOC111021632 PE=3 SV=1)

HSP 1 Score: 223 bits (568), Expect = 5.65e-71
Identity = 120/138 (86.96%), Postives = 129/138 (93.48%), Query Frame = 0


Query: 1   MDLKEAGSLLNNLVAAFNGRIAELQDLVIARNMYPASCIPDLSAVDASLKAMELQVQAIK 60
           MD KEAGSLL+NL+AAFN RIAELQDLVIARNMYPASC+PDLSAVDASLKAMELQVQAIK
Sbjct: 1   MDAKEAGSLLDNLIAAFNSRIAELQDLVIARNMYPASCVPDLSAVDASLKAMELQVQAIK 60

Query: 61  NQLQEEAEAIPKAKKLIEASLKQQKRLESISLHVPSYHIQSERVSALNLNTSLCSQAKKT 120
           NQL+EEAEAIPKAKKLIEASLKQQKRLESISLHVP+Y IQ ERVSALNLNTSLCS+A  +
Sbjct: 61  NQLREEAEAIPKAKKLIEASLKQQKRLESISLHVPTYQIQPERVSALNLNTSLCSEANNS 120

Query: 121 DTELGSLDAEKVISVLPK 138
            T LGSL+A+ VISVLPK
Sbjct: 121 GTGLGSLEAKDVISVLPK 138

[Close]

BLAST of Cp4.1LG17g11020 vs. ExPASy TrEMBL
Match: A0A1S4E1X5 (spindle and kinetochore-associated protein 1 homolog isoform X4 OS=Cucumis melo OX=3656 GN=LOC103497553 PE=3 SV=1)

HSP 1 Score: 213 bits (541), Expect = 1.78e-67
Identity = 118/139 (84.89%), Postives = 128/139 (92.09%), Query Frame = 0


Query: 1   MDLKEAGSLLNNLVAAFNGRIAELQDLVIARNMYPASCIPDLSAVDASLKAMELQVQAIK 60
           MD KEAGSLL+NL+ AFNGRIAELQDLVIARNMYPASC+PDLSAVDASLK MELQVQAIK
Sbjct: 1   MDSKEAGSLLDNLIVAFNGRIAELQDLVIARNMYPASCLPDLSAVDASLKVMELQVQAIK 60

Query: 61  NQLQEEAEAIPKAKKLIEASLKQQKRLESISLHVPSYH-IQSERVSALNLNTSLCSQAKK 120
           NQL+EEAEAIPKAKKLIEASLKQQKRLESISLHVP+Y+ I  ERVSALNLNTSL S+AK 
Sbjct: 61  NQLREEAEAIPKAKKLIEASLKQQKRLESISLHVPTYYQILPERVSALNLNTSLGSEAKT 120

Query: 121 TDTELGSLDAEKVISVLPK 138
           + +ELGS +AE VISVLPK
Sbjct: 121 SGSELGSREAENVISVLPK 139

[Close]

BLAST of Cp4.1LG17g11020 vs. ExPASy TrEMBL
Match: A0A1S3C6Z1 (spindle and kinetochore-associated protein 1 homolog isoform X3 OS=Cucumis melo OX=3656 GN=LOC103497553 PE=3 SV=1)

HSP 1 Score: 213 bits (541), Expect = 7.03e-67
Identity = 118/139 (84.89%), Postives = 128/139 (92.09%), Query Frame = 0


Query: 1   MDLKEAGSLLNNLVAAFNGRIAELQDLVIARNMYPASCIPDLSAVDASLKAMELQVQAIK 60
           MD KEAGSLL+NL+ AFNGRIAELQDLVIARNMYPASC+PDLSAVDASLK MELQVQAIK
Sbjct: 1   MDSKEAGSLLDNLIVAFNGRIAELQDLVIARNMYPASCLPDLSAVDASLKVMELQVQAIK 60

Query: 61  NQLQEEAEAIPKAKKLIEASLKQQKRLESISLHVPSYH-IQSERVSALNLNTSLCSQAKK 120
           NQL+EEAEAIPKAKKLIEASLKQQKRLESISLHVP+Y+ I  ERVSALNLNTSL S+AK 
Sbjct: 61  NQLREEAEAIPKAKKLIEASLKQQKRLESISLHVPTYYQILPERVSALNLNTSLGSEAKT 120

Query: 121 TDTELGSLDAEKVISVLPK 138
           + +ELGS +AE VISVLPK
Sbjct: 121 SGSELGSREAENVISVLPK 139

[Close]

BLAST of Cp4.1LG17g11020 vs. TAIR 10
Match: AT3G60660.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1395 (InterPro:IPR009829); Has 131 Blast hits to 131 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 83; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). )

HSP 1 Score: 131.3 bits (329), Expect = 5.8e-31
Identity = 76/141 (53.90%), Postives = 103/141 (73.05%), Query Frame = 0


Query: 1   MDLKEAGSLLNNLVAAFNGRIAELQDLVIARNMYPASCIPDLSAVDASLKAMELQVQAIK 60
           M+  +AGS L++L+A+FN RI ELQ+LVIARNMYPAS IPDLSA+D +L +MELQVQ+IK
Sbjct: 1   MEGNQAGSSLDSLIASFNKRIGELQELVIARNMYPASTIPDLSAIDTALSSMELQVQSIK 60

Query: 61  NQLQEEAEAIPKAKKLIEASLKQQKRLESISLHVPSYHIQSERVSALNLNTSLCSQAKK- 120
           ++L+EE EAIPKAKKLIEASLKQQ +L+ +S++ PS+      +   +LN  L  +  K 
Sbjct: 61  DRLREETEAIPKAKKLIEASLKQQGKLQKMSIYAPSHFPDKATMLNSDLNRCLLQENAKQ 120

Query: 121 --TDTELGSLDAEKVISVLPK 139
               + L SL  ++  +VLPK
Sbjct: 121 YEQHSTLSSLKFDEEAAVLPK 141

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g11020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZZ7	8.2e-30	53.90	Spindle and kinetochore-associated protein 1 homolog OS=Arabidopsis thaliana OX=...	[more]
B8B624	3.7e-22	50.89	Spindle and kinetochore-associated protein 1 homolog OS=Oryza sativa subsp. indi...	[more]
Q7XAM0	3.7e-22	50.89	Spindle and kinetochore-associated protein 1 homolog OS=Oryza sativa subsp. japo...	[more]
B4FGS2	1.6e-17	51.72	Spindle and kinetochore-associated protein 1 homolog OS=Zea mays OX=4577 PE=2 SV...	[more]

BLAST of Cp4.1LG17g11020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023515285.1	2.82e-83	100.00	spindle and kinetochore-associated protein 1 homolog [Cucurbita pepo subsp. pepo...	[more]
XP_023004833.1	1.08e-80	97.10	spindle and kinetochore-associated protein 1 homolog [Cucurbita maxima] >XP_0230...	[more]
XP_022960263.1	4.37e-80	96.38	spindle and kinetochore-associated protein 1 homolog [Cucurbita moschata] >XP_02...	[more]
KAG7025411.1	1.03e-79	96.38	Spindle and kinetochore-associated protein 1-like protein [Cucurbita argyrosperm...	[more]
XP_022154349.1	1.17e-70	86.96	spindle and kinetochore-associated protein 1 homolog [Momordica charantia] >XP_0...	[more]

BLAST of Cp4.1LG17g11020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KRI3	5.22e-81	97.10	spindle and kinetochore-associated protein 1 homolog OS=Cucurbita maxima OX=3661...	[more]
A0A6J1H8L1	2.12e-80	96.38	spindle and kinetochore-associated protein 1 homolog OS=Cucurbita moschata OX=36...	[more]
A0A6J1DLG8	5.65e-71	86.96	spindle and kinetochore-associated protein 1 homolog OS=Momordica charantia OX=3...	[more]
A0A1S4E1X5	1.78e-67	84.89	spindle and kinetochore-associated protein 1 homolog isoform X4 OS=Cucumis melo ...	[more]
A0A1S3C6Z1	7.03e-67	84.89	spindle and kinetochore-associated protein 1 homolog isoform X3 OS=Cucumis melo ...	[more]

BLAST of Cp4.1LG17g11020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G60660.1	5.8e-31	53.90	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1395...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 42..69
IPR009829	Spindle and kinetochore-associated protein 1	PFAM	PF07160	SKA1	coord: 20..119 e-value: 1.4E-20 score: 74.2
IPR009829	Spindle and kinetochore-associated protein 1	PANTHER	PTHR28573	SPINDLE AND KINETOCHORE-ASSOCIATED PROTEIN 1	coord: 4..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG17g11020.1	Cp4.1LG17g11020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051301	cell division
biological_process	GO:0007059	chromosome segregation
molecular_function	GO:0008017	microtubule binding