Cp4.1LG17g10290 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TAATAGCGGGAAGTTGTGTTTTAGTTGACCCTTTTTGAAAGCGGGCAGTATTGCCCCCAAATTGAAACAGCGCAGAGCTCCAATTCCTTTCTGCCTGCTCCTCATTCTGGCGCTACTGCTCTTAATTTTGAATCAATGGCGCGAGCAAAGCATCCAACCCAACGGAACTCTAATCGCAAGCCATCAGGTTCTCTCTGCCACACACAGTAATTTGGATTTACTTCCCGTTTTCATTCATGGGGTTTTTTTGGGTTCGTAATGATTTTGTTCATGGAAATGTTTTTGCTTTTGCATTTGCCTTTTCTTTTCCCTTCTTCTTACAGCTTGTTTTTTGTTTTTGGTAAAATCTTAGTTGCCGGAGCTTCACCGTCTTCCTCAGCTGCGCCGTCGACGGTATCACTTTCCCGTAATTCGTGACAATGTTTAGAATTTCGTGAATGTTTGCACCATTTTTATGTTGTTTGATTATGTATGATGGAAAACACGTTAGGAAAATTTCAGTGTATGGGTTTGTGAAGTCTGGTTTTAGCTGATACGATGGCTTAACAATTTTGGAAAATGAGAATGTTGCCATTGCATGAATCTTTCGTTGTATCTTGCTGAGAAAACAGTGGAATGAGGGAATAACTTATCAAATCTTTGTCCTGTCGATTTTTGCCACTGTTTTATGTAGCAAATGTGTGATTCTTTCATTTTTTGCTCGAGAGAAATTATAGACCATTTATAGATCCTTTGTCTCATTGTAGGCTTTGGTGGCTAAGGCCTTTTGTACTTGTGAGCTAGATTTCGTTCTTTTGAATTGAAGTCGTTTCTTGTAGGTACATTTTTCATTTTTCTCAATGAAAACCCAATTTCCTATTGAAAAAATGTGACAAAAGGAGAGATTAAGTGGCAAAACTAAGTAACCTTCTTGCATTTTAAGTTTAGCACTATCGGCTTCGCTTAGCGATTGTTCTTCGATGAGATTTCAGCCCATAATGTGCTTAGCAAATTACTTTGTAGAAGTTGCTCCACCTATGAAGTCATTCATGGATGGTGAAAGGGCTTAGTGTTTAGAGCTTGGGTGTCCTATGACTATGATACATACCTTTTCTATAAAGGTCTCACCTGCAGAAGTATGTTGTTTGGTTAGGTTATCCGATACTAGCAGGCGACGACGTAAGCTTTTGACAAGGTTTTGATAGACAAATTATACTCCAATTTGAGAAATTTTTAGAGGAGATTGCCACATTGTGATCAATAGTTTTGTACTGCTAGATTTAGGAGAGAAAAATTGCAAAAGTACTTCAATTTTGTATCCAAAAGTCATCAAGGGACATAATTTTTTTAAAGTTCATATCCAACGCCAGCTATATTGTGGCATTGAATAATTTTTAAACTCTATATGCTTTACTTATCAAAGTGTACATGTAAGTTACTATATAGAGGTGGTTACTACAGATGAATAGTATATAAGGCCAAGTGGTTAGAAAGGAGAGACAATTGTCTTCTTATGTGTTTTAAGTAGAAAGCAGACCCCTTGAACGTCTACGAACTATGTACATGACAGTACATTGCCTAGTTGGTTTCTAACTACAAAGATGTAACGTTTGCAACCCATGATCTTGGAGTCTTGGTTGCATATAGCAATTTGGATTTGATTTGTGGACCTCTTATGTCTACAACTATCAATTGGACTGGAGGGATTCCCTAATAGGAAAGGAAGTCCTCTCCTCAATTTTCTACTAAAGTATATTGGCTGATGCATTTTCTGTAGATGTGCTAGAGTAGATGAGGAAAAGAATTTTTGCTATATCAGTGCCAGAGTATACGAGGAAAAGAACTTCTCAAACAGTTGTTGTAACAGTCCAAGCCAACCGCTAGCAGATATTGTCCTCTTTAGGCTTTCCCTTTTAGACTTCCCCTCAAGGTTTTTAAAACGAGTCTGGTAGGGAGAGACTTCCACACACTTATCAAGAATACTTTATTCTCCTCCCCAACCGATGTAGGATCTCAGAGTTGTGCCTTTCCCAAACAGGGTTTGGAAGTTCCTACAAGTTTTTGTTTTAAAGCCTATGGTTGTAGAGAGCTTTATATTTGTACATTCAAAATAATTTTTGTGATCTTGGTTTGCTTGGAATACTTTGATGCAATTTATTTTTGTATAATTGGCTAATTAATATTTGTTTCTGCAAATTGATAGCCACTTAGTGGAAGAACACAAAGTGGGAGGCAAACTCAGAGTGAGTTCTTTTATTCAGGCTTTTTAATAAAGAACAATTTGATTTTGATGATAGCGATGTTCTTGCATATGCTTCTTCAACTGGCTTATTCCTTTAATATAGGTCCGCTATCAAGAACAACGGGAAAAAAAAGACGCTTCAGACCAGGGACAGTGGCTTTAAGGGAAATTCGACAACTCCAGAAATCATGGAATCTGCTAATTCCAGCCAGCAATTTCATCCGCGCAGTGAGTTCTTGTTTTCCTCTTGTTTTCCTCTTGTTTATTTGAATGCAAGGATACCCTTGAATTAAAGTTTACACTAATTGATTAAGGAGCCAGAAGTTTTCCTCTTGTTTATATTGAGATGTCTTCTTCTTTGCCATAACCGTAGTCTTGGTGCATATAGTCTTTTTATAAGAGTTTACTTTATGCATATCTATGACTGTTTCTTTTGGATGAAAATATAACTTCAATCAAGAAGGGGGAACTACAAAATTACATGGACTGTTGGAAGATAAGTCCCACGTCGGCTAATTAAGAGGTTGATCGTGGGTTTATAAGTAAGGAATACATCTCCATTGGTATGAGGTCTTTTGGGGAAGCCAAAAGCAAAGCCACGAGAGCTTGTGCTCAAAATAGGTAATATCATACCATGGTGGAGGGTCGTGATTCCTAACATTACAGGAGCCACCTATCTAGGATAATAGTCGTTACCAACCTAGGAGAAAATGCTATGACTTTCTTGATATGAAAATATCGGAGGGTCACATGGTTGCCTCATGAAACGAATCAAGATGTGAAAAATATGAAGAAAAACATAGAATTTGATCTGCTTAACCCCTGCCAACGTGCCGTTTACAAAATTCTTCTCTCTAGCCAAATGTTCTACACTATTGCATTACAACCCGTTTGCAACAAAATTCCCTTTGTCCTCAAATGGAGCTCTGTTAGTTTTGAGTTTTTAAGGAGAAAGAACATATTACTTGTTTTCTAATTACTTAACATGTATTGCTGTTGAAATTTGATCACTTGATGGTGATATTTAAAACTTTTGTAGGTGAAAGAAGTAAGCTACCAGTTGGCTCCGCAGGTTACACGTTGGCAAGCTGAAGCTTTAATAGCTCTTCAAGAAGTAATTGCTTATTTTCTATTGTTTGCTTGATTGAGCCATATTTTCTATGACTTTCTTGATTGAGCCACTCTATTTATGGCAATAGCTTTGGGAAATTCAAGCTGTTTTAAAATTTGTTGCAACTTGCAAATTTATCATGTCTAGCAGTTCGTTGACAGTACCTTTTACTATCTGTTAAGTATGTTCTAAAATTTACAAGAATTGTTGCTGAAATTTACTAAGAATTTTGAACATGAGCTTCCTTTATGAGAATGTTCTTTGTTAGTTTGTTGTATGAATGTGTGTGTTTTCTCTCTAGCTCTTGTTTAATTCTGAAATTTACTAAGATTTTTGACCTGATTCAGGTTTTGCTGCAGGTTGATTGTATTTTTCATAAACTGCTTTTGGTTATATTGTCTTAAGATCAAGTAAATTTGTACCATTAAACTTCTTGCATTTCTCTCATTTGTAGGCCGCAGAAGATTTTTTGGTTCATCTATTTGAAGATACAATGCTATGTGCTATTCATGCGAAGCGTGTAACAATCAGTAAGTCGATCATTAACATAGTGTCCTATGCACTGCACCAGCTTTCACCTTACTCGTTTTCGATGATATTACTGTTATGCTACAAGTAGATTCTTCTTAGGAAAAGCAATACTATCGAAACATATAGCGTGGTTGAGGCCAGACTGCATGAGTCACTATAATATAGTAAAAAGATAATTTTGTTTGCTCGACGTCGTATGCTTCTTCGAACTGGTTCCTATGTTAAGAAATGATTGTGGATTGTTAGCCTGGTCAGTATGGAATAAGTTTCTTTTAAGCTCATTTTGAACTTGTCATGCTCAAAGAACAAATTTTCTAAGCAAGCATATGGACTAAGATATTTCAGTTCTTGTTGCTCGACGTCGTATGCTTCTTCGAACTAGTTCCTATGTTAAGAAATGATTGTGAATTGTTAGCCTGGTTAGTATGGAATAAATCTCTTTTCAACTCGTTTTGAACTTATCATGCTCAACAAAGAACAACTTTTCTAAGCAAGCATATGGACTAAGATAGTTCACTTTTTGTTGCTCGACGTCGTATACTTCTTCGAACTGGTTCCTATGTTAAGAAATGATTATGGATTGTTAGCCTGGTTAGTATGGAGTAAATTTCTTTTCAATTCGTTTTGAACTTGTCATGCTCAACAATGATCAACTTTTCTAAGCAAGCATATGGACTAAGATAGTTCATTTCTTGTTGCTCGACGTCGTATACTTCTTCGAACTGGCTCCTATGTTAAGAAATGATTATGGATTGTTAGCCTGGTTAGTATGGAATAAATTTCTTTTTAACTCGTTTTGAACTTGTCATGCTTTTCGTTCGTCGTTTCGTATTTGTACATTAGAACTTTATCTTCCAGGGCTTCATAATCAGTAACTTTTGACTTGTAAATAGTTTAACATGATTATGAACTCTGTTAGGTTCCCAGTGGCTGCCTCATTAGATTTCATCTTCTGTCATCGTCCAAATTGTACGTATTGATCCTCTAAATGTTATCCATTTCCTTTGTTCTTTCCATTCAGTGAAAAAGGATTTTGAACTGGCACGCCGGTTAGGAGGGAAAGGGAGGCCATGGTAAGAAGATCTGTTCATTAGAAAGACAAGCCATTGTAGCTACACCGACATCGCCACCACATTAGTTCGTACGATAGAATTCCAGTAGTTCATTGCTAGTAATCACTGTGCATCCATATGTTGAAATTAGGTAGTAGACTGGACCAGAGTTCCCCAAAACTTGGAGTTTGTGTTAGCTATTTGACATAGATGTTAGTATCCATTCAGCTTTGATATGACCGTTGCCTCCATACTCACTGCATTTTCAAGATGACAAACGGGCGAACTTCTATAGTTAATTTGTGATTTTGAGTTCAACGATCGCAGGGTAAATGACTGAACCATCAATCTTTAATATGGTAATTCGTGTTTTATTCTATTGAGGTATACTTGAGTTGATTAGAGTAAATTTGTGATTGTAACGTTGTTTGAATGAATAGAGCTCAAATTCTGAAGTGGTCAGGCAAAACTATCTTTGTGTGTTTTA TAATAGCGGGAAGTTGTGTTTTAGTTGACCCTTTTTGAAAGCGGGCAGTATTGCCCCCAAATTGAAACAGCGCAGAGCTCCAATTCCTTTCTGCCTGCTCCTCATTCTGGCGCTACTGCTCTTAATTTTGAATCAATGGCGCGAGCAAAGCATCCAACCCAACGGAACTCTAATCGCAAGCCATCAGTTGCCGGAGCTTCACCGTCTTCCTCAGCTGCGCCGTCGACGCCACTTAGTGGAAGAACACAAAGTGGGAGGCAAACTCAGAGTCCGCTATCAAGAACAACGGGAAAAAAAAGACGCTTCAGACCAGGGACAGTGGCTTTAAGGGAAATTCGACAACTCCAGAAATCATGGAATCTGCTAATTCCAGCCAGCAATTTCATCCGCGCAGTGAAAGAAGTAAGCTACCAGTTGGCTCCGCAGGTTACACGTTGGCAAGCTGAAGCTTTAATAGCTCTTCAAGAAGCCGCAGAAGATTTTTTGGTTCATCTATTTGAAGATACAATGCTATGTGCTATTCATGCGAAGCGTGTAACAATCATGAAAAAGGATTTTGAACTGGCACGCCGGTTAGGAGGGAAAGGGAGGCCATGGTAAGAAGATCTGTTCATTAGAAAGACAAGCCATTGTAGCTACACCGACATCGCCACCACATTAGTTCGTACGATAGAATTCCAGTAGTTCATTGCTAGTAATCACTGTGCATCCATATGTTGAAATTAGGTAGTAGACTGGACCAGAGTTCCCCAAAACTTGGAGTTTGTGTTAGCTATTTGACATAGATGTTAGTATCCATTCAGCTTTGATATGACCGTTGCCTCCATACTCACTGCATTTTCAAGATGACAAACGGGCGAACTTCTATAGTTAATTTGTGATTTTGAGTTCAACGATCGCAGGGTAAATGACTGAACCATCAATCTTTAATATGGTAATTCGTGTTTTATTCTATTGAGGTATACTTGAGTTGATTAGAGTAAATTTGTGATTGTAACGTTGTTTGAATGAATAGAGCTCAAATTCTGAAGTGGTCAGGCAAAACTATCTTTGTGTGTTTTA ATGGCGCGAGCAAAGCATCCAACCCAACGGAACTCTAATCGCAAGCCATCAGTTGCCGGAGCTTCACCGTCTTCCTCAGCTGCGCCGTCGACGCCACTTAGTGGAAGAACACAAAGTGGGAGGCAAACTCAGAGTCCGCTATCAAGAACAACGGGAAAAAAAAGACGCTTCAGACCAGGGACAGTGGCTTTAAGGGAAATTCGACAACTCCAGAAATCATGGAATCTGCTAATTCCAGCCAGCAATTTCATCCGCGCAGTGAAAGAAGTAAGCTACCAGTTGGCTCCGCAGGTTACACGTTGGCAAGCTGAAGCTTTAATAGCTCTTCAAGAAGCCGCAGAAGATTTTTTGGTTCATCTATTTGAAGATACAATGCTATGTGCTATTCATGCGAAGCGTGTAACAATCATGAAAAAGGATTTTGAACTGGCACGCCGGTTAGGAGGGAAAGGGAGGCCATGGTAA MARAKHPTQRNSNRKPSVAGASPSSSAAPSTPLSGRTQSGRQTQSPLSRTTGKKRRFRPGTVALREIRQLQKSWNLLIPASNFIRAVKEVSYQLAPQVTRWQAEALIALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW Homology
BLAST of Cp4.1LG17g10290 vs. ExPASy Swiss-Prot
Match: Q8RVQ9 (Histone H3-like centromeric protein HTR12 OS=Arabidopsis thaliana OX=3702 GN=HTR12 PE=1 SV=3) HSP 1 Score: 157.5 bits (397), Expect = 1.2e-37 Identity = 96/178 (53.93%), Postives = 118/178 (66.29%), Query Frame = 0
BLAST of Cp4.1LG17g10290 vs. ExPASy Swiss-Prot
Match: Q7RXR3 (Histone H3-like centromeric protein hH3v OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=hH3v PE=3 SV=1) HSP 1 Score: 119.0 bits (297), Expect = 4.7e-26 Identity = 71/133 (53.38%), Postives = 92/133 (69.17%), Query Frame = 0
BLAST of Cp4.1LG17g10290 vs. ExPASy Swiss-Prot
Match: Q59LN9 (Histone H3-like centromeric protein CSE4 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=CSE4 PE=3 SV=1) HSP 1 Score: 114.0 bits (284), Expect = 1.5e-24 Identity = 65/115 (56.52%), Postives = 85/115 (73.91%), Query Frame = 0
BLAST of Cp4.1LG17g10290 vs. ExPASy Swiss-Prot
Match: Q0MXD1 (Histone H3-like centromeric protein CSE4 OS=Millerozyma farinosa OX=4920 GN=CSE4 PE=3 SV=1) HSP 1 Score: 112.5 bits (280), Expect = 4.4e-24 Identity = 65/104 (62.50%), Postives = 75/104 (72.12%), Query Frame = 0
BLAST of Cp4.1LG17g10290 vs. ExPASy Swiss-Prot
Match: Q9Y812 (Histone H3-like centromeric protein cnp1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cnp1 PE=1 SV=1) HSP 1 Score: 111.7 bits (278), Expect = 7.5e-24 Identity = 60/102 (58.82%), Postives = 75/102 (73.53%), Query Frame = 0
BLAST of Cp4.1LG17g10290 vs. NCBI nr
Match: XP_022959605.1 (histone H3-like centromeric protein HTR12 [Cucurbita moschata] >XP_023005091.1 histone H3-like centromeric protein HTR12 [Cucurbita maxima] >XP_023514272.1 histone H3-like centromeric protein HTR12 [Cucurbita pepo subsp. pepo] >KAG6592914.1 histone H3-like centromeric protein HTR12, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 293 bits (749), Expect = 1.38e-99 Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0
BLAST of Cp4.1LG17g10290 vs. NCBI nr
Match: XP_022156549.1 (histone H3-like centromeric protein HTR12 [Momordica charantia]) HSP 1 Score: 256 bits (655), Expect = 2.96e-85 Identity = 132/154 (85.71%), Postives = 143/154 (92.86%), Query Frame = 0
BLAST of Cp4.1LG17g10290 vs. NCBI nr
Match: XP_038896752.1 (histone H3-like centromeric protein HTR12 [Benincasa hispida]) HSP 1 Score: 247 bits (631), Expect = 1.34e-81 Identity = 132/154 (85.71%), Postives = 138/154 (89.61%), Query Frame = 0
BLAST of Cp4.1LG17g10290 vs. NCBI nr
Match: XP_011659153.1 (histone H3-like centromeric protein HTR12 isoform X2 [Cucumis sativus] >KAE8646217.1 hypothetical protein Csa_016289 [Cucumis sativus]) HSP 1 Score: 240 bits (612), Expect = 1.06e-78 Identity = 127/154 (82.47%), Postives = 138/154 (89.61%), Query Frame = 0
BLAST of Cp4.1LG17g10290 vs. NCBI nr
Match: XP_011659152.1 (histone H3-1 isoform X1 [Cucumis sativus]) HSP 1 Score: 201 bits (512), Expect = 4.30e-63 Identity = 109/136 (80.15%), Postives = 120/136 (88.24%), Query Frame = 0
BLAST of Cp4.1LG17g10290 vs. ExPASy TrEMBL
Match: A0A6J1KTZ4 (Histone H3.2 OS=Cucurbita maxima OX=3661 GN=LOC111498182 PE=3 SV=1) HSP 1 Score: 293 bits (749), Expect = 6.68e-100 Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0
BLAST of Cp4.1LG17g10290 vs. ExPASy TrEMBL
Match: A0A6J1H6R9 (Histone H3.2 OS=Cucurbita moschata OX=3662 GN=LOC111460630 PE=3 SV=1) HSP 1 Score: 293 bits (749), Expect = 6.68e-100 Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0
BLAST of Cp4.1LG17g10290 vs. ExPASy TrEMBL
Match: A0A6J1DTT5 (Histone H3.2 OS=Momordica charantia OX=3673 GN=LOC111023426 PE=3 SV=1) HSP 1 Score: 256 bits (655), Expect = 1.43e-85 Identity = 132/154 (85.71%), Postives = 143/154 (92.86%), Query Frame = 0
BLAST of Cp4.1LG17g10290 vs. ExPASy TrEMBL
Match: A0A0A0K4F4 (Histone H3.2 OS=Cucumis sativus OX=3659 GN=Csa_7G328280 PE=3 SV=1) HSP 1 Score: 202 bits (513), Expect = 1.84e-63 Identity = 112/144 (77.78%), Postives = 125/144 (86.81%), Query Frame = 0
BLAST of Cp4.1LG17g10290 vs. ExPASy TrEMBL
Match: B7XEI8 (Centromere specific histone H3 variant OS=Nicotiana sylvestris OX=4096 GN=NsCENH3 PE=2 SV=1) HSP 1 Score: 189 bits (481), Expect = 4.97e-59 Identity = 111/160 (69.38%), Postives = 122/160 (76.25%), Query Frame = 0
BLAST of Cp4.1LG17g10290 vs. TAIR 10
Match: AT1G01370.1 (Histone superfamily protein ) HSP 1 Score: 157.5 bits (397), Expect = 8.4e-39 Identity = 96/178 (53.93%), Postives = 118/178 (66.29%), Query Frame = 0
BLAST of Cp4.1LG17g10290 vs. TAIR 10
Match: AT1G01370.2 (Histone superfamily protein ) HSP 1 Score: 157.5 bits (397), Expect = 8.4e-39 Identity = 96/178 (53.93%), Postives = 118/178 (66.29%), Query Frame = 0
BLAST of Cp4.1LG17g10290 vs. TAIR 10
Match: AT1G19890.1 (male-gamete-specific histone H3 ) HSP 1 Score: 106.7 bits (265), Expect = 1.7e-23 Identity = 71/150 (47.33%), Postives = 92/150 (61.33%), Query Frame = 0
BLAST of Cp4.1LG17g10290 vs. TAIR 10
Match: AT1G09200.1 (Histone superfamily protein ) HSP 1 Score: 102.1 bits (253), Expect = 4.2e-22 Identity = 71/150 (47.33%), Postives = 92/150 (61.33%), Query Frame = 0
BLAST of Cp4.1LG17g10290 vs. TAIR 10
Match: AT1G75600.1 (Histone superfamily protein ) HSP 1 Score: 102.1 bits (253), Expect = 4.2e-22 Identity = 71/150 (47.33%), Postives = 95/150 (63.33%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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