Cp4.1LG17g10290 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG17g10290
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Histone H3.2
Location	Cp4.1LG17: 7748122 .. 7753523 (-)
RNA-Seq Expression	Cp4.1LG17g10290
Synteny	Cp4.1LG17g10290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATAGCGGGAAGTTGTGTTTTAGTTGACCCTTTTTGAAAGCGGGCAGTATTGCCCCCAAATTGAAACAGCGCAGAGCTCCAATTCCTTTCTGCCTGCTCCTCATTCTGGCGCTACTGCTCTTAATTTTGAATCAATGGCGCGAGCAAAGCATCCAACCCAACGGAACTCTAATCGCAAGCCATCAGGTTCTCTCTGCCACACACAGTAATTTGGATTTACTTCCCGTTTTCATTCATGGGGTTTTTTTGGGTTCGTAATGATTTTGTTCATGGAAATGTTTTTGCTTTTGCATTTGCCTTTTCTTTTCCCTTCTTCTTACAGCTTGTTTTTTGTTTTTGGTAAAATCTTAGTTGCCGGAGCTTCACCGTCTTCCTCAGCTGCGCCGTCGACGGTATCACTTTCCCGTAATTCGTGACAATGTTTAGAATTTCGTGAATGTTTGCACCATTTTTATGTTGTTTGATTATGTATGATGGAAAACACGTTAGGAAAATTTCAGTGTATGGGTTTGTGAAGTCTGGTTTTAGCTGATACGATGGCTTAACAATTTTGGAAAATGAGAATGTTGCCATTGCATGAATCTTTCGTTGTATCTTGCTGAGAAAACAGTGGAATGAGGGAATAACTTATCAAATCTTTGTCCTGTCGATTTTTGCCACTGTTTTATGTAGCAAATGTGTGATTCTTTCATTTTTTGCTCGAGAGAAATTATAGACCATTTATAGATCCTTTGTCTCATTGTAGGCTTTGGTGGCTAAGGCCTTTTGTACTTGTGAGCTAGATTTCGTTCTTTTGAATTGAAGTCGTTTCTTGTAGGTACATTTTTCATTTTTCTCAATGAAAACCCAATTTCCTATTGAAAAAATGTGACAAAAGGAGAGATTAAGTGGCAAAACTAAGTAACCTTCTTGCATTTTAAGTTTAGCACTATCGGCTTCGCTTAGCGATTGTTCTTCGATGAGATTTCAGCCCATAATGTGCTTAGCAAATTACTTTGTAGAAGTTGCTCCACCTATGAAGTCATTCATGGATGGTGAAAGGGCTTAGTGTTTAGAGCTTGGGTGTCCTATGACTATGATACATACCTTTTCTATAAAGGTCTCACCTGCAGAAGTATGTTGTTTGGTTAGGTTATCCGATACTAGCAGGCGACGACGTAAGCTTTTGACAAGGTTTTGATAGACAAATTATACTCCAATTTGAGAAATTTTTAGAGGAGATTGCCACATTGTGATCAATAGTTTTGTACTGCTAGATTTAGGAGAGAAAAATTGCAAAAGTACTTCAATTTTGTATCCAAAAGTCATCAAGGGACATAATTTTTTTAAAGTTCATATCCAACGCCAGCTATATTGTGGCATTGAATAATTTTTAAACTCTATATGCTTTACTTATCAAAGTGTACATGTAAGTTACTATATAGAGGTGGTTACTACAGATGAATAGTATATAAGGCCAAGTGGTTAGAAAGGAGAGACAATTGTCTTCTTATGTGTTTTAAGTAGAAAGCAGACCCCTTGAACGTCTACGAACTATGTACATGACAGTACATTGCCTAGTTGGTTTCTAACTACAAAGATGTAACGTTTGCAACCCATGATCTTGGAGTCTTGGTTGCATATAGCAATTTGGATTTGATTTGTGGACCTCTTATGTCTACAACTATCAATTGGACTGGAGGGATTCCCTAATAGGAAAGGAAGTCCTCTCCTCAATTTTCTACTAAAGTATATTGGCTGATGCATTTTCTGTAGATGTGCTAGAGTAGATGAGGAAAAGAATTTTTGCTATATCAGTGCCAGAGTATACGAGGAAAAGAACTTCTCAAACAGTTGTTGTAACAGTCCAAGCCAACCGCTAGCAGATATTGTCCTCTTTAGGCTTTCCCTTTTAGACTTCCCCTCAAGGTTTTTAAAACGAGTCTGGTAGGGAGAGACTTCCACACACTTATCAAGAATACTTTATTCTCCTCCCCAACCGATGTAGGATCTCAGAGTTGTGCCTTTCCCAAACAGGGTTTGGAAGTTCCTACAAGTTTTTGTTTTAAAGCCTATGGTTGTAGAGAGCTTTATATTTGTACATTCAAAATAATTTTTGTGATCTTGGTTTGCTTGGAATACTTTGATGCAATTTATTTTTGTATAATTGGCTAATTAATATTTGTTTCTGCAAATTGATAGCCACTTAGTGGAAGAACACAAAGTGGGAGGCAAACTCAGAGTGAGTTCTTTTATTCAGGCTTTTTAATAAAGAACAATTTGATTTTGATGATAGCGATGTTCTTGCATATGCTTCTTCAACTGGCTTATTCCTTTAATATAGGTCCGCTATCAAGAACAACGGGAAAAAAAAGACGCTTCAGACCAGGGACAGTGGCTTTAAGGGAAATTCGACAACTCCAGAAATCATGGAATCTGCTAATTCCAGCCAGCAATTTCATCCGCGCAGTGAGTTCTTGTTTTCCTCTTGTTTTCCTCTTGTTTATTTGAATGCAAGGATACCCTTGAATTAAAGTTTACACTAATTGATTAAGGAGCCAGAAGTTTTCCTCTTGTTTATATTGAGATGTCTTCTTCTTTGCCATAACCGTAGTCTTGGTGCATATAGTCTTTTTATAAGAGTTTACTTTATGCATATCTATGACTGTTTCTTTTGGATGAAAATATAACTTCAATCAAGAAGGGGGAACTACAAAATTACATGGACTGTTGGAAGATAAGTCCCACGTCGGCTAATTAAGAGGTTGATCGTGGGTTTATAAGTAAGGAATACATCTCCATTGGTATGAGGTCTTTTGGGGAAGCCAAAAGCAAAGCCACGAGAGCTTGTGCTCAAAATAGGTAATATCATACCATGGTGGAGGGTCGTGATTCCTAACATTACAGGAGCCACCTATCTAGGATAATAGTCGTTACCAACCTAGGAGAAAATGCTATGACTTTCTTGATATGAAAATATCGGAGGGTCACATGGTTGCCTCATGAAACGAATCAAGATGTGAAAAATATGAAGAAAAACATAGAATTTGATCTGCTTAACCCCTGCCAACGTGCCGTTTACAAAATTCTTCTCTCTAGCCAAATGTTCTACACTATTGCATTACAACCCGTTTGCAACAAAATTCCCTTTGTCCTCAAATGGAGCTCTGTTAGTTTTGAGTTTTTAAGGAGAAAGAACATATTACTTGTTTTCTAATTACTTAACATGTATTGCTGTTGAAATTTGATCACTTGATGGTGATATTTAAAACTTTTGTAGGTGAAAGAAGTAAGCTACCAGTTGGCTCCGCAGGTTACACGTTGGCAAGCTGAAGCTTTAATAGCTCTTCAAGAAGTAATTGCTTATTTTCTATTGTTTGCTTGATTGAGCCATATTTTCTATGACTTTCTTGATTGAGCCACTCTATTTATGGCAATAGCTTTGGGAAATTCAAGCTGTTTTAAAATTTGTTGCAACTTGCAAATTTATCATGTCTAGCAGTTCGTTGACAGTACCTTTTACTATCTGTTAAGTATGTTCTAAAATTTACAAGAATTGTTGCTGAAATTTACTAAGAATTTTGAACATGAGCTTCCTTTATGAGAATGTTCTTTGTTAGTTTGTTGTATGAATGTGTGTGTTTTCTCTCTAGCTCTTGTTTAATTCTGAAATTTACTAAGATTTTTGACCTGATTCAGGTTTTGCTGCAGGTTGATTGTATTTTTCATAAACTGCTTTTGGTTATATTGTCTTAAGATCAAGTAAATTTGTACCATTAAACTTCTTGCATTTCTCTCATTTGTAGGCCGCAGAAGATTTTTTGGTTCATCTATTTGAAGATACAATGCTATGTGCTATTCATGCGAAGCGTGTAACAATCAGTAAGTCGATCATTAACATAGTGTCCTATGCACTGCACCAGCTTTCACCTTACTCGTTTTCGATGATATTACTGTTATGCTACAAGTAGATTCTTCTTAGGAAAAGCAATACTATCGAAACATATAGCGTGGTTGAGGCCAGACTGCATGAGTCACTATAATATAGTAAAAAGATAATTTTGTTTGCTCGACGTCGTATGCTTCTTCGAACTGGTTCCTATGTTAAGAAATGATTGTGGATTGTTAGCCTGGTCAGTATGGAATAAGTTTCTTTTAAGCTCATTTTGAACTTGTCATGCTCAAAGAACAAATTTTCTAAGCAAGCATATGGACTAAGATATTTCAGTTCTTGTTGCTCGACGTCGTATGCTTCTTCGAACTAGTTCCTATGTTAAGAAATGATTGTGAATTGTTAGCCTGGTTAGTATGGAATAAATCTCTTTTCAACTCGTTTTGAACTTATCATGCTCAACAAAGAACAACTTTTCTAAGCAAGCATATGGACTAAGATAGTTCACTTTTTGTTGCTCGACGTCGTATACTTCTTCGAACTGGTTCCTATGTTAAGAAATGATTATGGATTGTTAGCCTGGTTAGTATGGAGTAAATTTCTTTTCAATTCGTTTTGAACTTGTCATGCTCAACAATGATCAACTTTTCTAAGCAAGCATATGGACTAAGATAGTTCATTTCTTGTTGCTCGACGTCGTATACTTCTTCGAACTGGCTCCTATGTTAAGAAATGATTATGGATTGTTAGCCTGGTTAGTATGGAATAAATTTCTTTTTAACTCGTTTTGAACTTGTCATGCTTTTCGTTCGTCGTTTCGTATTTGTACATTAGAACTTTATCTTCCAGGGCTTCATAATCAGTAACTTTTGACTTGTAAATAGTTTAACATGATTATGAACTCTGTTAGGTTCCCAGTGGCTGCCTCATTAGATTTCATCTTCTGTCATCGTCCAAATTGTACGTATTGATCCTCTAAATGTTATCCATTTCCTTTGTTCTTTCCATTCAGTGAAAAAGGATTTTGAACTGGCACGCCGGTTAGGAGGGAAAGGGAGGCCATGGTAAGAAGATCTGTTCATTAGAAAGACAAGCCATTGTAGCTACACCGACATCGCCACCACATTAGTTCGTACGATAGAATTCCAGTAGTTCATTGCTAGTAATCACTGTGCATCCATATGTTGAAATTAGGTAGTAGACTGGACCAGAGTTCCCCAAAACTTGGAGTTTGTGTTAGCTATTTGACATAGATGTTAGTATCCATTCAGCTTTGATATGACCGTTGCCTCCATACTCACTGCATTTTCAAGATGACAAACGGGCGAACTTCTATAGTTAATTTGTGATTTTGAGTTCAACGATCGCAGGGTAAATGACTGAACCATCAATCTTTAATATGGTAATTCGTGTTTTATTCTATTGAGGTATACTTGAGTTGATTAGAGTAAATTTGTGATTGTAACGTTGTTTGAATGAATAGAGCTCAAATTCTGAAGTGGTCAGGCAAAACTATCTTTGTGTGTTTTA

mRNA sequence

TAATAGCGGGAAGTTGTGTTTTAGTTGACCCTTTTTGAAAGCGGGCAGTATTGCCCCCAAATTGAAACAGCGCAGAGCTCCAATTCCTTTCTGCCTGCTCCTCATTCTGGCGCTACTGCTCTTAATTTTGAATCAATGGCGCGAGCAAAGCATCCAACCCAACGGAACTCTAATCGCAAGCCATCAGTTGCCGGAGCTTCACCGTCTTCCTCAGCTGCGCCGTCGACGCCACTTAGTGGAAGAACACAAAGTGGGAGGCAAACTCAGAGTCCGCTATCAAGAACAACGGGAAAAAAAAGACGCTTCAGACCAGGGACAGTGGCTTTAAGGGAAATTCGACAACTCCAGAAATCATGGAATCTGCTAATTCCAGCCAGCAATTTCATCCGCGCAGTGAAAGAAGTAAGCTACCAGTTGGCTCCGCAGGTTACACGTTGGCAAGCTGAAGCTTTAATAGCTCTTCAAGAAGCCGCAGAAGATTTTTTGGTTCATCTATTTGAAGATACAATGCTATGTGCTATTCATGCGAAGCGTGTAACAATCATGAAAAAGGATTTTGAACTGGCACGCCGGTTAGGAGGGAAAGGGAGGCCATGGTAAGAAGATCTGTTCATTAGAAAGACAAGCCATTGTAGCTACACCGACATCGCCACCACATTAGTTCGTACGATAGAATTCCAGTAGTTCATTGCTAGTAATCACTGTGCATCCATATGTTGAAATTAGGTAGTAGACTGGACCAGAGTTCCCCAAAACTTGGAGTTTGTGTTAGCTATTTGACATAGATGTTAGTATCCATTCAGCTTTGATATGACCGTTGCCTCCATACTCACTGCATTTTCAAGATGACAAACGGGCGAACTTCTATAGTTAATTTGTGATTTTGAGTTCAACGATCGCAGGGTAAATGACTGAACCATCAATCTTTAATATGGTAATTCGTGTTTTATTCTATTGAGGTATACTTGAGTTGATTAGAGTAAATTTGTGATTGTAACGTTGTTTGAATGAATAGAGCTCAAATTCTGAAGTGGTCAGGCAAAACTATCTTTGTGTGTTTTA

Coding sequence (CDS)

ATGGCGCGAGCAAAGCATCCAACCCAACGGAACTCTAATCGCAAGCCATCAGTTGCCGGAGCTTCACCGTCTTCCTCAGCTGCGCCGTCGACGCCACTTAGTGGAAGAACACAAAGTGGGAGGCAAACTCAGAGTCCGCTATCAAGAACAACGGGAAAAAAAAGACGCTTCAGACCAGGGACAGTGGCTTTAAGGGAAATTCGACAACTCCAGAAATCATGGAATCTGCTAATTCCAGCCAGCAATTTCATCCGCGCAGTGAAAGAAGTAAGCTACCAGTTGGCTCCGCAGGTTACACGTTGGCAAGCTGAAGCTTTAATAGCTCTTCAAGAAGCCGCAGAAGATTTTTTGGTTCATCTATTTGAAGATACAATGCTATGTGCTATTCATGCGAAGCGTGTAACAATCATGAAAAAGGATTTTGAACTGGCACGCCGGTTAGGAGGGAAAGGGAGGCCATGGTAA

Protein sequence

MARAKHPTQRNSNRKPSVAGASPSSSAAPSTPLSGRTQSGRQTQSPLSRTTGKKRRFRPGTVALREIRQLQKSWNLLIPASNFIRAVKEVSYQLAPQVTRWQAEALIALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW

Homology

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BLAST of Cp4.1LG17g10290 vs. ExPASy Swiss-Prot
Match: Q8RVQ9 (Histone H3-like centromeric protein HTR12 OS=Arabidopsis thaliana OX=3702 GN=HTR12 PE=1 SV=3)

HSP 1 Score: 157.5 bits (397), Expect = 1.2e-37
Identity = 96/178 (53.93%), Postives = 118/178 (66.29%), Query Frame = 0


Query: 1   MARAKHPTQRNSNR-KPSVAGASPSSSAAPSTPLSGRTQSG----RQTQSPLSRTTGKKR 60
           MAR KH   R+  R +   AGAS S +A P+T  + R   G    +QT    S  TG +R
Sbjct: 1   MARTKHRVTRSQPRNQTDAAGASSSQAAGPTTTPTRRGGEGGDNTQQTNPTTSPATGTRR 60

Query: 61  ------------------RFRPGTVALREIRQLQKSWNLLIPASNFIRAVKEVSYQLA-P 120
                             R+RPGTVAL+EIR  QK  NLLIPA++FIR V+ +++ LA P
Sbjct: 61  GAKRSRQAMPRGSQKKSYRYRPGTVALKEIRHFQKQTNLLIPAASFIREVRSITHMLAPP 120

Query: 121 QVTRWQAEALIALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW 155
           Q+ RW AEAL+ALQEAAED+LV LF D+MLCAIHA+RVT+M+KDFELARRLGGKGRPW
Sbjct: 121 QINRWTAEALVALQEAAEDYLVGLFSDSMLCAIHARRVTLMRKDFELARRLGGKGRPW 178

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BLAST of Cp4.1LG17g10290 vs. ExPASy Swiss-Prot
Match: Q7RXR3 (Histone H3-like centromeric protein hH3v OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=hH3v PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 4.7e-26
Identity = 71/133 (53.38%), Postives = 92/133 (69.17%), Query Frame = 0


Query: 19  AGASPSSSAAPSTPLSGRTQSGRQTQSPLSRTTGKKRRFRPGTVALREIRQLQKSWNLLI 78
           A A P+  A P      R  S  Q   P+ +  GKKRR+RPGT+AL+EIR  Q++ +LL+
Sbjct: 18  AAAVPTPKATPPGRRKSRA-SSVQPGDPVPQ--GKKRRYRPGTLALKEIRNYQRTTDLLV 77

Query: 79  PASNFIRAVKEVSYQLAP--QVTRWQAEALIALQEAAEDFLVHLFEDTMLCAIHAKRVTI 138
               F R V+E++ Q  P  +  RWQ++A++ALQEAAE FLVHLFEDT LCAIHAKRVTI
Sbjct: 78  AKLPFARLVREIAMQFRPMDEEMRWQSQAILALQEAAEAFLVHLFEDTNLCAIHAKRVTI 137

Query: 139 MKKDFELARRLGG 150
           M+KD +LARR+ G
Sbjct: 138 MQKDIQLARRIRG 147

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BLAST of Cp4.1LG17g10290 vs. ExPASy Swiss-Prot
Match: Q59LN9 (Histone H3-like centromeric protein CSE4 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=CSE4 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.5e-24
Identity = 65/115 (56.52%), Postives = 85/115 (73.91%), Query Frame = 0


Query: 43  TQSPLSRTTGK-KRRFRPGTVALREIRQLQKSWNLLIPASNFIRAVKEVSYQ-LAPQV-T 102
           T+  ++RT  + K+R+RPGT ALREIRQ QKS +LLI    F R V+E+S   + P    
Sbjct: 97  TRPEVNRTVPRVKKRYRPGTKALREIRQYQKSTDLLIRKLPFARLVREISLDFVGPSYGL 156

Query: 103 RWQAEALIALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW 155
           RWQ+ A++ALQEA+E FL+HL EDT LCAIHAKRVTIM+KD +LARR+  +G+ W
Sbjct: 157 RWQSNAILALQEASESFLIHLLEDTNLCAIHAKRVTIMQKDIQLARRI--RGQSW 209

[Close]

BLAST of Cp4.1LG17g10290 vs. ExPASy Swiss-Prot
Match: Q0MXD1 (Histone H3-like centromeric protein CSE4 OS=Millerozyma farinosa OX=4920 GN=CSE4 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.4e-24
Identity = 65/104 (62.50%), Postives = 75/104 (72.12%), Query Frame = 0


Query: 48  SRTTGKKRRFRPGTVALREIRQLQKSWNLLIPASNFIRAVKEV--SYQLAPQVTRWQAEA 107
           S  T  KRR+RPGT ALREIR+ Q+S  LLI    F R VKEV  +Y  A    RWQ+ A
Sbjct: 53  STNTTVKRRYRPGTKALREIRRYQRSSELLIRKLPFARLVKEVAENYIGADYGIRWQSNA 112

Query: 108 LIALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGG 150
           ++ALQEA E FLVHL EDT LCAIHAKRVTIM+KD +LARR+ G
Sbjct: 113 VLALQEACEAFLVHLLEDTNLCAIHAKRVTIMQKDIQLARRIRG 156

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BLAST of Cp4.1LG17g10290 vs. ExPASy Swiss-Prot
Match: Q9Y812 (Histone H3-like centromeric protein cnp1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cnp1 PE=1 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 7.5e-24
Identity = 60/102 (58.82%), Postives = 75/102 (73.53%), Query Frame = 0


Query: 53  KKRRFRPGTVALREIRQLQKSWNLLIPASNFIRAVKEVSYQLAPQVT-----RWQAEALI 112
           +K+R+RPGT ALREIR+ Q+S +LLI    F R V+E+S +     +     RWQ+ AL 
Sbjct: 18  RKKRYRPGTTALREIRKYQRSTDLLIQRLPFSRIVREISSEFVANFSTDVGLRWQSTALQ 77

Query: 113 ALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGG 150
            LQEAAE FLVHLFEDT LCAIHAKRVTIM++D +LARR+ G
Sbjct: 78  CLQEAAEAFLVHLFEDTNLCAIHAKRVTIMQRDMQLARRIRG 119

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BLAST of Cp4.1LG17g10290 vs. NCBI nr
Match: XP_022959605.1 (histone H3-like centromeric protein HTR12 [Cucurbita moschata] >XP_023005091.1 histone H3-like centromeric protein HTR12 [Cucurbita maxima] >XP_023514272.1 histone H3-like centromeric protein HTR12 [Cucurbita pepo subsp. pepo] >KAG6592914.1 histone H3-like centromeric protein HTR12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 293 bits (749), Expect = 1.38e-99
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MARAKHPTQRNSNRKPSVAGASPSSSAAPSTPLSGRTQSGRQTQSPLSRTTGKKRRFRPG 60
           MARAKHPTQRNSNRKPSVAGASPSSSAAPSTPLSGRTQSGRQTQSPLSRTTGKKRRFRPG
Sbjct: 1   MARAKHPTQRNSNRKPSVAGASPSSSAAPSTPLSGRTQSGRQTQSPLSRTTGKKRRFRPG 60

Query: 61  TVALREIRQLQKSWNLLIPASNFIRAVKEVSYQLAPQVTRWQAEALIALQEAAEDFLVHL 120
           TVALREIRQLQKSWNLLIPASNFIRAVKEVSYQLAPQVTRWQAEALIALQEAAEDFLVHL
Sbjct: 61  TVALREIRQLQKSWNLLIPASNFIRAVKEVSYQLAPQVTRWQAEALIALQEAAEDFLVHL 120

Query: 121 FEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW 154
           FEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW
Sbjct: 121 FEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW 154

[Close]

BLAST of Cp4.1LG17g10290 vs. NCBI nr
Match: XP_022156549.1 (histone H3-like centromeric protein HTR12 [Momordica charantia])

HSP 1 Score: 256 bits (655), Expect = 2.96e-85
Identity = 132/154 (85.71%), Postives = 143/154 (92.86%), Query Frame = 0


Query: 1   MARAKHPTQRNSNRKPSVAGASPSSSAAPSTPLSGRTQSGRQTQSPLSRTTGKKRRFRPG 60
           MARA+HP QRN+NRKP  +G +PSS A PSTPL GRTQ+ RQ QSP +RT+GKKRRFRPG
Sbjct: 1   MARARHPAQRNANRKPLGSGVAPSSPAGPSTPLGGRTQNVRQAQSPPARTSGKKRRFRPG 60

Query: 61  TVALREIRQLQKSWNLLIPASNFIRAVKEVSYQLAPQVTRWQAEALIALQEAAEDFLVHL 120
           TVALREIRQ QK+WNLLIPAS+FIRAVKEVSYQLAP++TRWQAEALIALQEAAEDFLVHL
Sbjct: 61  TVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLAPEITRWQAEALIALQEAAEDFLVHL 120

Query: 121 FEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW 154
           FEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW
Sbjct: 121 FEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW 154

[Close]

BLAST of Cp4.1LG17g10290 vs. NCBI nr
Match: XP_038896752.1 (histone H3-like centromeric protein HTR12 [Benincasa hispida])

HSP 1 Score: 247 bits (631), Expect = 1.34e-81
Identity = 132/154 (85.71%), Postives = 138/154 (89.61%), Query Frame = 0


Query: 1   MARAKHPTQRNSNRKPSVAGASPSSSAAPSTPLSGRTQSGRQTQSPLSRTTGKKRRFRPG 60
           MARA+HP QR SNR PS  GA+ SS AAPSTPLSGRTQ+  Q QS   RTT KK+RFRPG
Sbjct: 1   MARARHPPQRKSNRMPSGTGAAQSSPAAPSTPLSGRTQNVEQAQSSPLRTTKKKKRFRPG 60

Query: 61  TVALREIRQLQKSWNLLIPASNFIRAVKEVSYQLAPQVTRWQAEALIALQEAAEDFLVHL 120
           TVALREIR LQKSWNLLIPAS FIRAVKEVSYQLAPQ+TRWQAEAL+ALQEAAEDFLVHL
Sbjct: 61  TVALREIRSLQKSWNLLIPASCFIRAVKEVSYQLAPQITRWQAEALVALQEAAEDFLVHL 120

Query: 121 FEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW 154
           FEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW
Sbjct: 121 FEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW 154

[Close]

BLAST of Cp4.1LG17g10290 vs. NCBI nr
Match: XP_011659153.1 (histone H3-like centromeric protein HTR12 isoform X2 [Cucumis sativus] >KAE8646217.1 hypothetical protein Csa_016289 [Cucumis sativus])

HSP 1 Score: 240 bits (612), Expect = 1.06e-78
Identity = 127/154 (82.47%), Postives = 138/154 (89.61%), Query Frame = 0


Query: 1   MARAKHPTQRNSNRKPSVAGASPSSSAAPSTPLSGRTQSGRQTQSPLSRTTGKKRRFRPG 60
           MARA+HP +R SNR PS +GA+ SS  APSTPL+GRTQ+ RQ Q+  SRT  KK+RFRPG
Sbjct: 1   MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPG 60

Query: 61  TVALREIRQLQKSWNLLIPASNFIRAVKEVSYQLAPQVTRWQAEALIALQEAAEDFLVHL 120
           TVAL+EIR LQKSWNLLIPAS FIRAVKEVS QLAPQ+TRWQAEAL+ALQEAAEDFLVHL
Sbjct: 61  TVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHL 120

Query: 121 FEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW 154
           FEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW
Sbjct: 121 FEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW 154

[Close]

BLAST of Cp4.1LG17g10290 vs. NCBI nr
Match: XP_011659152.1 (histone H3-1 isoform X1 [Cucumis sativus])

HSP 1 Score: 201 bits (512), Expect = 4.30e-63
Identity = 109/136 (80.15%), Postives = 120/136 (88.24%), Query Frame = 0


Query: 1   MARAKHPTQRNSNRKPSVAGASPSSSAAPSTPLSGRTQSGRQTQSPLSRTTGKKRRFRPG 60
           MARA+HP +R SNR PS +GA+ SS  APSTPL+GRTQ+ RQ Q+  SRT  KK+RFRPG
Sbjct: 1   MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPG 60

Query: 61  TVALREIRQLQKSWNLLIPASNFIRAVKEVSYQLAPQVTRWQAEALIALQEAAEDFLVHL 120
           TVAL+EIR LQKSWNLLIPAS FIRAVKEVS QLAPQ+TRWQAEAL+ALQEAAEDFLVHL
Sbjct: 61  TVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHL 120

Query: 121 FEDTMLCAIHAKRVTI 136
           FEDTMLCAIHAKRVTI
Sbjct: 121 FEDTMLCAIHAKRVTI 136

[Close]

BLAST of Cp4.1LG17g10290 vs. ExPASy TrEMBL
Match: A0A6J1KTZ4 (Histone H3.2 OS=Cucurbita maxima OX=3661 GN=LOC111498182 PE=3 SV=1)

HSP 1 Score: 293 bits (749), Expect = 6.68e-100
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MARAKHPTQRNSNRKPSVAGASPSSSAAPSTPLSGRTQSGRQTQSPLSRTTGKKRRFRPG 60
           MARAKHPTQRNSNRKPSVAGASPSSSAAPSTPLSGRTQSGRQTQSPLSRTTGKKRRFRPG
Sbjct: 1   MARAKHPTQRNSNRKPSVAGASPSSSAAPSTPLSGRTQSGRQTQSPLSRTTGKKRRFRPG 60

Query: 61  TVALREIRQLQKSWNLLIPASNFIRAVKEVSYQLAPQVTRWQAEALIALQEAAEDFLVHL 120
           TVALREIRQLQKSWNLLIPASNFIRAVKEVSYQLAPQVTRWQAEALIALQEAAEDFLVHL
Sbjct: 61  TVALREIRQLQKSWNLLIPASNFIRAVKEVSYQLAPQVTRWQAEALIALQEAAEDFLVHL 120

Query: 121 FEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW 154
           FEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW
Sbjct: 121 FEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW 154

[Close]

BLAST of Cp4.1LG17g10290 vs. ExPASy TrEMBL
Match: A0A6J1H6R9 (Histone H3.2 OS=Cucurbita moschata OX=3662 GN=LOC111460630 PE=3 SV=1)

HSP 1 Score: 293 bits (749), Expect = 6.68e-100
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MARAKHPTQRNSNRKPSVAGASPSSSAAPSTPLSGRTQSGRQTQSPLSRTTGKKRRFRPG 60
           MARAKHPTQRNSNRKPSVAGASPSSSAAPSTPLSGRTQSGRQTQSPLSRTTGKKRRFRPG
Sbjct: 1   MARAKHPTQRNSNRKPSVAGASPSSSAAPSTPLSGRTQSGRQTQSPLSRTTGKKRRFRPG 60

Query: 61  TVALREIRQLQKSWNLLIPASNFIRAVKEVSYQLAPQVTRWQAEALIALQEAAEDFLVHL 120
           TVALREIRQLQKSWNLLIPASNFIRAVKEVSYQLAPQVTRWQAEALIALQEAAEDFLVHL
Sbjct: 61  TVALREIRQLQKSWNLLIPASNFIRAVKEVSYQLAPQVTRWQAEALIALQEAAEDFLVHL 120

Query: 121 FEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW 154
           FEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW
Sbjct: 121 FEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW 154

[Close]

BLAST of Cp4.1LG17g10290 vs. ExPASy TrEMBL
Match: A0A6J1DTT5 (Histone H3.2 OS=Momordica charantia OX=3673 GN=LOC111023426 PE=3 SV=1)

HSP 1 Score: 256 bits (655), Expect = 1.43e-85
Identity = 132/154 (85.71%), Postives = 143/154 (92.86%), Query Frame = 0


Query: 1   MARAKHPTQRNSNRKPSVAGASPSSSAAPSTPLSGRTQSGRQTQSPLSRTTGKKRRFRPG 60
           MARA+HP QRN+NRKP  +G +PSS A PSTPL GRTQ+ RQ QSP +RT+GKKRRFRPG
Sbjct: 1   MARARHPAQRNANRKPLGSGVAPSSPAGPSTPLGGRTQNVRQAQSPPARTSGKKRRFRPG 60

Query: 61  TVALREIRQLQKSWNLLIPASNFIRAVKEVSYQLAPQVTRWQAEALIALQEAAEDFLVHL 120
           TVALREIRQ QK+WNLLIPAS+FIRAVKEVSYQLAP++TRWQAEALIALQEAAEDFLVHL
Sbjct: 61  TVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLAPEITRWQAEALIALQEAAEDFLVHL 120

Query: 121 FEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW 154
           FEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW
Sbjct: 121 FEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW 154

[Close]

BLAST of Cp4.1LG17g10290 vs. ExPASy TrEMBL
Match: A0A0A0K4F4 (Histone H3.2 OS=Cucumis sativus OX=3659 GN=Csa_7G328280 PE=3 SV=1)

HSP 1 Score: 202 bits (513), Expect = 1.84e-63
Identity = 112/144 (77.78%), Postives = 125/144 (86.81%), Query Frame = 0


Query: 1   MARAKHPTQRNSNRKPSVAGASPSSSAAPSTPLSGRTQSGRQTQSPLSRTTGKKRRFRPG 60
           MARA+HP +R SNR PS +GA+ SS  APSTPL+GRTQ+ RQ Q+  SRT  KK+RFRPG
Sbjct: 1   MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPG 60

Query: 61  TVALREIRQLQKSWNLLIPASNFIRAVKEVSYQLAPQVTRWQAEALIALQEAAEDFLVHL 120
           TVAL+EIR LQKSWNLLIPAS FIRAVKEVS QLAPQ+TRWQAEAL+ALQEAAEDFLVHL
Sbjct: 61  TVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHL 120

Query: 121 FEDTMLCAIHAKRVTIMKKDFELA 144
           FEDTMLCAIHAKRVTI K +F +A
Sbjct: 121 FEDTMLCAIHAKRVTI-KYNFLVA 143

[Close]

BLAST of Cp4.1LG17g10290 vs. ExPASy TrEMBL
Match: B7XEI8 (Centromere specific histone H3 variant OS=Nicotiana sylvestris OX=4096 GN=NsCENH3 PE=2 SV=1)

HSP 1 Score: 189 bits (481), Expect = 4.97e-59
Identity = 111/160 (69.38%), Postives = 122/160 (76.25%), Query Frame = 0


Query: 1   MARAKHPTQRNSNRKPS------VAGASPSSSAAPSTPLSGRTQSGRQTQSPLSRTTGKK 60
           MAR KH   R  +R PS       A A+ SSSA  STP   RT S R   S   RT  KK
Sbjct: 1   MARTKHLALRKQSRPPSRPTATRSAAAAASSSAPQSTPT--RT-SQRTAPSTPGRTQKKK 60

Query: 61  RRFRPGTVALREIRQLQKSWNLLIPASNFIRAVKEVSYQLAPQVTRWQAEALIALQEAAE 120
            R+RPGTVALREIR+ QK+WNLLIPA+ FIR VKE+SY  AP+VTRWQAEALIALQEAAE
Sbjct: 61  TRYRPGTVALREIRRFQKTWNLLIPAAPFIRLVKEISYFFAPEVTRWQAEALIALQEAAE 120

Query: 121 DFLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW 154
           DFLVHLF+D+MLCAIHAKRVT+MKKDFELARRLGGK RPW
Sbjct: 121 DFLVHLFDDSMLCAIHAKRVTLMKKDFELARRLGGKARPW 157

[Close]

BLAST of Cp4.1LG17g10290 vs. TAIR 10
Match: AT1G01370.1 (Histone superfamily protein )

HSP 1 Score: 157.5 bits (397), Expect = 8.4e-39
Identity = 96/178 (53.93%), Postives = 118/178 (66.29%), Query Frame = 0


Query: 1   MARAKHPTQRNSNR-KPSVAGASPSSSAAPSTPLSGRTQSG----RQTQSPLSRTTGKKR 60
           MAR KH   R+  R +   AGAS S +A P+T  + R   G    +QT    S  TG +R
Sbjct: 1   MARTKHRVTRSQPRNQTDAAGASSSQAAGPTTTPTRRGGEGGDNTQQTNPTTSPATGTRR 60

Query: 61  ------------------RFRPGTVALREIRQLQKSWNLLIPASNFIRAVKEVSYQLA-P 120
                             R+RPGTVAL+EIR  QK  NLLIPA++FIR V+ +++ LA P
Sbjct: 61  GAKRSRQAMPRGSQKKSYRYRPGTVALKEIRHFQKQTNLLIPAASFIREVRSITHMLAPP 120

Query: 121 QVTRWQAEALIALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW 155
           Q+ RW AEAL+ALQEAAED+LV LF D+MLCAIHA+RVT+M+KDFELARRLGGKGRPW
Sbjct: 121 QINRWTAEALVALQEAAEDYLVGLFSDSMLCAIHARRVTLMRKDFELARRLGGKGRPW 178

[Close]

BLAST of Cp4.1LG17g10290 vs. TAIR 10
Match: AT1G01370.2 (Histone superfamily protein )

HSP 1 Score: 157.5 bits (397), Expect = 8.4e-39
Identity = 96/178 (53.93%), Postives = 118/178 (66.29%), Query Frame = 0


Query: 1   MARAKHPTQRNSNR-KPSVAGASPSSSAAPSTPLSGRTQSG----RQTQSPLSRTTGKKR 60
           MAR KH   R+  R +   AGAS S +A P+T  + R   G    +QT    S  TG +R
Sbjct: 1   MARTKHRVTRSQPRNQTDAAGASSSQAAGPTTTPTRRGGEGGDNTQQTNPTTSPATGTRR 60

Query: 61  ------------------RFRPGTVALREIRQLQKSWNLLIPASNFIRAVKEVSYQLA-P 120
                             R+RPGTVAL+EIR  QK  NLLIPA++FIR V+ +++ LA P
Sbjct: 61  GAKRSRQAMPRGSQKKSYRYRPGTVALKEIRHFQKQTNLLIPAASFIREVRSITHMLAPP 120

Query: 121 QVTRWQAEALIALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW 155
           Q+ RW AEAL+ALQEAAED+LV LF D+MLCAIHA+RVT+M+KDFELARRLGGKGRPW
Sbjct: 121 QINRWTAEALVALQEAAEDYLVGLFSDSMLCAIHARRVTLMRKDFELARRLGGKGRPW 178

[Close]

BLAST of Cp4.1LG17g10290 vs. TAIR 10
Match: AT1G19890.1 (male-gamete-specific histone H3 )

HSP 1 Score: 106.7 bits (265), Expect = 1.7e-23
Identity = 71/150 (47.33%), Postives = 92/150 (61.33%), Query Frame = 0


Query: 1   MARAKHPTQRNSNRKPSVAGASPSSSAAPSTPLSGRTQSGRQTQSPLSRTTGKKRRFRPG 60
           MAR K   ++      S  G  P    A        T++ R+T+ P      +  RFRPG
Sbjct: 1   MARTKQTARK------STGGKGPRKELA--------TKAARKTRRPYRGGVKRAHRFRPG 60

Query: 61  TVALREIRQLQKSWNLLIPASNFIRAVKEVSYQLAPQVTRWQAEALIALQEAAEDFLVHL 120
           TVALREIR+ QKS +LLI    F R V+E++      + R+Q+ A++ALQEAAE +LV L
Sbjct: 61  TVALREIRKYQKSTDLLIRKLPFQRLVREIAQDFKVDL-RFQSHAVLALQEAAEAYLVGL 120

Query: 121 FEDTMLCAIHAKRVTIMKKDFELARRLGGK 151
           FEDT LCAIHAKRVTIM KD +LARR+ G+
Sbjct: 121 FEDTNLCAIHAKRVTIMSKDIQLARRIRGE 135

[Close]

BLAST of Cp4.1LG17g10290 vs. TAIR 10
Match: AT1G09200.1 (Histone superfamily protein )

HSP 1 Score: 102.1 bits (253), Expect = 4.2e-22
Identity = 71/150 (47.33%), Postives = 92/150 (61.33%), Query Frame = 0


Query: 1   MARAKHPTQRNSNRKPSVAGASPSSSAAPSTPLSGRTQSGRQTQSPLSRTTGKKRRFRPG 60
           MAR K   ++      S  G +P    A        T++ R++ +P +    K  RFRPG
Sbjct: 1   MARTKQTARK------STGGKAPRKQLA--------TKAARKS-APATGGVKKPHRFRPG 60

Query: 61  TVALREIRQLQKSWNLLIPASNFIRAVKEVSYQLAPQVTRWQAEALIALQEAAEDFLVHL 120
           TVALREIR+ QKS  LLI    F R V+E++      + R+Q+ A+ ALQEAAE +LV L
Sbjct: 61  TVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDL-RFQSSAVAALQEAAEAYLVGL 120

Query: 121 FEDTMLCAIHAKRVTIMKKDFELARRLGGK 151
           FEDT LCAIHAKRVTIM KD +LARR+ G+
Sbjct: 121 FEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134

[Close]

BLAST of Cp4.1LG17g10290 vs. TAIR 10
Match: AT1G75600.1 (Histone superfamily protein )

HSP 1 Score: 102.1 bits (253), Expect = 4.2e-22
Identity = 71/150 (47.33%), Postives = 95/150 (63.33%), Query Frame = 0


Query: 1   MARAKHPTQRNSNRKPSVAGASPSSSAAPSTPLSGRTQSGRQTQSPLSRTTGKKRRFRPG 60
           MAR K   +++   K            AP T L+  T++ R++ +P +    K  R+RPG
Sbjct: 1   MARTKQTARKSHGGK------------APRTLLA--TKAARKS-APTTGGVKKPHRYRPG 60

Query: 61  TVALREIRQLQKSWNLLIPASNFIRAVKEVSYQLAPQVTRWQAEALIALQEAAEDFLVHL 120
           TVALREIR+ QKS  LLI    F R V+E++      + R+Q+ A++ALQEAAE +LV L
Sbjct: 61  TVALREIRKYQKSTELLIRKLPFQRLVREIAQDYKTDL-RFQSHAVLALQEAAEAYLVGL 120

Query: 121 FEDTMLCAIHAKRVTIMKKDFELARRLGGK 151
           FEDT LCAIHAKRVTIM KD +LARR+ G+
Sbjct: 121 FEDTNLCAIHAKRVTIMPKDVQLARRIRGE 134

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g10290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RVQ9	1.2e-37	53.93	Histone H3-like centromeric protein HTR12 OS=Arabidopsis thaliana OX=3702 GN=HTR...	[more]
Q7RXR3	4.7e-26	53.38	Histone H3-like centromeric protein hH3v OS=Neurospora crassa (strain ATCC 24698...	[more]
Q59LN9	1.5e-24	56.52	Histone H3-like centromeric protein CSE4 OS=Candida albicans (strain SC5314 / AT...	[more]
Q0MXD1	4.4e-24	62.50	Histone H3-like centromeric protein CSE4 OS=Millerozyma farinosa OX=4920 GN=CSE4...	[more]
Q9Y812	7.5e-24	58.82	Histone H3-like centromeric protein cnp1 OS=Schizosaccharomyces pombe (strain 97...	[more]

BLAST of Cp4.1LG17g10290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959605.1	1.38e-99	100.00	histone H3-like centromeric protein HTR12 [Cucurbita moschata] >XP_023005091.1 h...	[more]
XP_022156549.1	2.96e-85	85.71	histone H3-like centromeric protein HTR12 [Momordica charantia]	[more]
XP_038896752.1	1.34e-81	85.71	histone H3-like centromeric protein HTR12 [Benincasa hispida]	[more]
XP_011659153.1	1.06e-78	82.47	histone H3-like centromeric protein HTR12 isoform X2 [Cucumis sativus] >KAE86462...	[more]
XP_011659152.1	4.30e-63	80.15	histone H3-1 isoform X1 [Cucumis sativus]	[more]

BLAST of Cp4.1LG17g10290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KTZ4	6.68e-100	100.00	Histone H3.2 OS=Cucurbita maxima OX=3661 GN=LOC111498182 PE=3 SV=1	[more]
A0A6J1H6R9	6.68e-100	100.00	Histone H3.2 OS=Cucurbita moschata OX=3662 GN=LOC111460630 PE=3 SV=1	[more]
A0A6J1DTT5	1.43e-85	85.71	Histone H3.2 OS=Momordica charantia OX=3673 GN=LOC111023426 PE=3 SV=1	[more]
A0A0A0K4F4	1.84e-63	77.78	Histone H3.2 OS=Cucumis sativus OX=3659 GN=Csa_7G328280 PE=3 SV=1	[more]
B7XEI8	4.97e-59	69.38	Centromere specific histone H3 variant OS=Nicotiana sylvestris OX=4096 GN=NsCENH...	[more]

BLAST of Cp4.1LG17g10290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G01370.1	8.4e-39	53.93	Histone superfamily protein	[more]
AT1G01370.2	8.4e-39	53.93	Histone superfamily protein	[more]
AT1G19890.1	1.7e-23	47.33	male-gamete-specific histone H3	[more]
AT1G09200.1	4.2e-22	47.33	Histone superfamily protein	[more]
AT1G75600.1	4.2e-22	47.33	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000164	Histone H3/CENP-A	PRINTS	PR00622	HISTONEH3	coord: 114..130 score: 75.45 coord: 130..151 score: 66.4 coord: 9..23 score: 18.84 coord: 96..114 score: 48.4
IPR000164	Histone H3/CENP-A	SMART	SM00428	h35	coord: 49..152 e-value: 1.0E-42 score: 157.9
IPR000164	Histone H3/CENP-A	PANTHER	PTHR11426	HISTONE H3	coord: 12..154
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 30..147 e-value: 1.2E-33 score: 116.2
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 2..151 e-value: 4.4E-45 score: 154.9
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 25..148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..60
None	No IPR available	PANTHER	PTHR11426:SF223	HISTONE H3-LIKE CENTROMERIC PROTEIN HTR12	coord: 12..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG17g10290.1	Cp4.1LG17g10290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051321	meiotic cell cycle
biological_process	GO:0006996	organelle organization
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity