Cp4.1LG17g09740 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG17g09740
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionLOW QUALITY PROTEIN: uncharacterized protein At4g13200, chloroplastic
LocationCp4.1LG17: 7482163 .. 7487037 (+)
RNA-Seq ExpressionCp4.1LG17g09740
SyntenyCp4.1LG17g09740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATTGGAGGCAGGGTTCAGACAACCCATCCATGGAAGCTGGTATTGGATAATCCAGAGTGAGCCACGTTGTGGTTGCCTTCTTGTCAAGAATCAGGGGGCGTTTCCGGGTTGCTGACATCATACAGTCCAAGCCACAAGTACCCATTTTTATCTCTGTTTGGCTGTCAAGAAAACGAGCGAGAAACGCTGAGAAAGTGACGCCACGCATTTTTCAGTTCCCGTCGCCCAGAAATGACTAGTGGGGTTACACCTTCAGTTTCCCCATCCCATTTCTCAATTCTTCACTCTAAACCAAAGATTACCCACTTTTCATCTCCTTCAAATCTCAAATTTCGACCGATTTCACCAATTGGGTCTCCCAGATTCGTAGTCCGTTGCAGCTCTGGTACTTTGAATCTTCGCCTACTCTGTTTTTGTTTTGTTTTGTTTTGGTATATGTTCATAGTTATTGGCGAATTTTACGAAGGCGTTAGTGGTGAAATCTGTTTAAATCTGTGCTATTGATTCTCAGATTTGAGGGTATTTCTGCGTTTTTCTTGATTTTTGTTTGCAGATTGAACACTTGTTTTGGATTTCACATCTGATTATATGCCTACAAACTGTTTGATATATTGTCAATGGCTTTATTAAGTATGAAGCTCGCCTGATTTTATAAGATTAGTATCCATTTCCCCCTTATTAAGAGCTAATTAGTTTTCTAGAGTAGGAATTTGTTCTCCTTGATCCTTTTTGTACTCTGAATTTGGATCAATTTATGAGATTTATCACGTTCTACAGGAGGAAATGTTGCACTTTTTTTTTCTTTTTTTCTTTTTTTTGCTGAAGATTTGGAAGCTTAATGAATTTTTGGGATGGTAATGATCTTAAGAACATGATATTGATCTTATTAGAAGAAAATTCTGTAGAATCACAGTGGAAACATAATCTTTTTGGTTTCTATGATCTTACAGTTTCGTTACTGTTATCAAGCATTCAACGAGCTAGCTGTATGATGCAGGTGATGGCGACAGCAGGACTGTTCTAAATGCCTTTTTCTTAGGAAAAGCTTTAGCAGAAGCCTTAACCGAGCGCGTTGAGTCAACAATTGGAGAAGTTTTGAGTGGGATTGGTAGGCTGCAAGCTGAACAACAAAAACAAATTCTTGATTTCCAGGTAAGATGCTCCGAAGTTAATGATAGAACTTCCTAACTTTGTTTTTAATTTACTTTTCCTTTTACATGATAAAAGGGTTGACCAACTAATGAACTTAAAATCCGATGTCCTATGAGTTATCTCGACAACTAAACTTAGTCGAGTCTTAAGTGGTTGTCTTGTGAGAGTTGTCGAGGAATGGATATCAAAAGAGAAAACGACACTGCATTGTGGTCTTTTGTACTGTGGATTATACAAAAACAAAAAGAACAGCTAAAGAAGACAACTGTGAGATCCCACATCGGTTGGGGAGGAGAACAAAGTATTCTTTATAAAGGTGTGGAAACCTCTCCCTAGCAGACGCGTTTTGAAGACCTTAAGAGGAAACTCGAAAGGGAAAGCCTAAAAGAGAACAATATCAGCTAGGGGTGAGCTAAAACTTTTTTAGTGTAGCGGTAGGTTAGGCCTGGATTGAAGCTTTTACTTACTGAAACCATGATGCATGGCTTAAAATTGCTGTGGCTCTAGCATCTTTCTTATTCATTTCGAGTGTTTTCAGGCTAAAATTCATGGCTAGAGGCTCGTGGGTAGCTTTCGATTTAGTTTCGTTGTGATGAGATTGGAAGTTTGAGATTAAAATCGACCGAGTAGAGTACGAAGAGTAAAAGCAAAGAAAACTCCCTTATGCATGCATTATCGTTCTCTTAAGAACATTTTAAATTTCCTCTGAAACTAGATTGAAGTGAAAGAAGCTCAATATTGCTGAAAATGGCATATTCATACTGGAAACAAACTTTGTACAGGAGGAGGTGATAGAAAGAGCCAAAAAAGCCCAGGAAAAAGCAGCACGTGATGCCAAAGAAGTACAAGGTCCGATCTCTTCTTCTTCTTCGATAAGATCGCCTACAATCGAAGTTGCTTCATCGTCGACTAGTTCGACCAACCAACAACAACTCTCGAATCCAGGCTCTGATTCAGGAACTGCTCCGAACCAGGATCCTCCTCTTGGTGGCGAAGAGTAATTAATTGTGTCTTTGTCAATTTCTCTTGGTTGTTATACATAGAAGACTTATAGTGAATGTAACCTTTATATACTGATGATGAGTTGGGTAGGTTCGTCTTTCAGATATCTTATGAGATTCTTGACGTGACCGAACACAACCCGTTTAGTAACATTATTATTTGAAATTTTGAATATAGGAATGAGTTAAAAATGACTGTTATAGTCAATTTAATATGCCTACATTTTTGGTACTTGATCAAGTAGAGAGCTAAGAAACTTCTCGAAAAATAAATGTCTATCCAATGTATTTCGTGTAGATTTTCGGACTGAACCAAACCAAGTCCTGCACCACCATTTTTGGTTATAGATCAAACGACAAGCACCATCACCTCCTTTTTGAGAGTTTTTGAGATAATAACACTACAAAGGGTAGGACTAATTGTTAAACTAATCATAATCCAAAAAGAAGAGCATAATTCGTCCCTGATTACACTCGTCCCTGATTACACCATCTTTGCTATGATCCTGATGCAGCTGAACTAGAAGAACAACAGGTCCTTTGCTAATCCTCCCCTCGAAGTCGTATCGTTAAATACGCTAAGAATTCAGATATTTGACATAATAAGCATGTCGATTAATCAAAACAAATCACCTCACCTCACCCTTTCAACTACTTGAGGCTGCAAAATCAGAAACCTTGTATCCCTGTGTAAATCTTTTCAATTTTGCAGTTTCACCCACGGAAGAAAGCCATTCTGTTAAAATCTCCATTGTTATATAATCAGCATTACACGCTTGTTCCACCATTCTATCCATAACTTCTAACGCTTTCTCCAACCATTTCTTCTCCTTAAGCCCTTTCAAAATAGCATTATATGTTGTGGTGTTCGGCTTAACCCCGTTAACGTTCATATCGTCAAATAGAGCAAGAGCGGAACTGACCTCATTTCTTTTGCATAGAGAATCTATCAATATATTGTATATCACTGTGTTGGGAGGAACCTTTGATGTGGCGCTCATTTCCTTGAAAAGCTTCATGGCTTCATCAGTATTGTTGTTCAAGCAATATGCATGAATCACAGCTCCATAAGTGAAGACACTCGGTAAAAGACACGCCTCCTTGGTCATCTTTTCCATAAATTTAAAGGCTAATTCTAGATTCCCCATTTTACTGAAGTAAGAAATCAAAGTGTTGTATGTGACACTGTCAGGCTTGATTCCAACCACCTCCATTTCATCCAGCAATTCATTAGCTTCATCTAATTTGTTCTTCTTACAGAACTCACTGATAAGAAGATTGTAGCAAACAAGATCTAGTCGAAACCCTGCCGCTTTCATCCTCGACGCAACGGAGGTGGCATCATCCAACCTTCCAGCTTGGGCTAAACCACATATCAAAGTATAATAGACAATAGCATCAGGAAAACATCCAGCTTTGGACATTTCATCAAAAAATTCTATTGCCTTATCAATATTGTTCACTTTGCAAAAAGCATTAATGAACACCGTGTAAGTAACAGAATTTCCTTTCAAGCCCTTCTGCTGCATTTCCCTGAAGAACTCAACCGCGCTGCTTATTCTGCCATGCTTGCACATTCCATCAACTAAAGTATTGAGGGTGATTACATTTGGCACGACTTGTTCATTGACCATCTCGTTATAGAGCGCATGGGCTGGCTCGATTGCGCCTGCCTTACAGTACCCATCAATCAAACAATTGTAGGTAACGGTATTGGGTTTACAGCCATCAGATCTCATTGTTCCCAGCAAGCGCAATCCTTCTTCTTGTCTACCCACTTTACAGAGCCCATCAATCAATGTATTGTAAGTGATTGCATCAGGCGCAACGGCCTTGGCCTCCTCCTTTTCGCCCTTCATTTTCTCAAACACCTCTAGTGCATCATCAATCATTCTGAACTTACACATATGGTTGATAAGAATACCAAAAGTTATAACATTAGGTTGAACATTCATGTCCTTCATCTTTCGCATTAGCAAATTCATTTTCTCAAATTCCCTCTCCTTTCCCAAACCTGTTAAGAGCGCATTGCAGGGTGCAGCATCTTTAAGACCATTCCATGTCATCAAATCATCTAAAACACTCCATGCAAGATCGATATTTCTACTCCTACAAAGCTTGGAGATCAACTGGGTTAATGTAATGGGATTAGGAACAACATGGTGTTTACCAAATTTGGCTACCAACCCAGCAATTTCATTTTCCTTGACTCTCCAATCCGACCCATTTATCTTCAACAATTTAGTGAAAACAATATCAGCAGTTATATCATTGGGTCGAAACTCCGAATCTGGAAGCAGCATTTCGTCGAGCACATTCAATGCATTATCAACTCGCCCAGATTTCAGAAGCAAATCAATGATCACATTACGAACATATGTGTTTTTCTTATGTGGATCAAGTTCAGAGAACACAGCAAGCGCCTTATCAACCATGCCAGACCTTCCAAGACGCCGAAGCAGATTAACAGCATTCTGGGCTGTCGAGTGAGCCATTTCTGCTCCTTTAAGGTCTCGTAAAGCTCAAAAATCAAATTCGGTTAACTGGGTTCTCGAATAGGGAGATCAATAATGGCCTGGAAAGGAGAAGACAACAAACGCCGATCAGTTCCAGGGATAAGATAAATCATCTCGAACATAATTTCAAAAAAAAAAATAATTAAGAATTGTTGAAATGAGAGAGAGAGAGAGAGAGAGATCCAAATAGAATTCTCGGTCCTCA

mRNA sequence

CATTGGAGGCAGGGTTCAGACAACCCATCCATGGAAGCTGGTATTGGATAATCCAGAGTGAGCCACGTTGTGGTTGCCTTCTTGTCAAGAATCAGGGGGCGTTTCCGGGTTGCTGACATCATACAGTCCAAGCCACAAGTACCCATTTTTATCTCTGTTTGGCTGTCAAGAAAACGAGCGAGAAACGCTGAGAAAGTGACGCCACGCATTTTTCAGTTCCCGTCGCCCAGAAATGACTAGTGGGGTTACACCTTCAGTTTCCCCATCCCATTTCTCAATTCTTCACTCTAAACCAAAGATTACCCACTTTTCATCTCCTTCAAATCTCAAATTTCGACCGATTTCACCAATTGGGTCTCCCAGATTCGTAGTCCGTTGCAGCTCTGGTGATGGCGACAGCAGGACTGTTCTAAATGCCTTTTTCTTAGGAAAAGCTTTAGCAGAAGCCTTAACCGAGCGCGTTGAGTCAACAATTGGAGAAGTTTTGAGTGGGATTGGTAGGCTGCAAGCTGAACAACAAAAACAAATTCTTGATTTCCAGGAGGAGGTGATAGAAAGAGCCAAAAAAGCCCAGGAAAAAGCAGCACGTGATGCCAAAGAAGTACAAGGTCCGATCTCTTCTTCTTCTTCGATAAGATCGCCTACAATCGAAGTTGCTTCATCGTCGACTAGTTCGACCAACCAACAACAACTCTCGAATCCAGGCTCTGATTCAGGAACTGCTCCGAACCAGGATCCTCCTCTTGGTGGCGAAGAGTAATTAATTGTGTCTTTGTCAATTTCTCTTGGTTGTTATACATAGAAGACTTATAGTGAATGTAACCTTTATATACTGATGATGAGTTGGGTAGGTTCGTCTTTCAGATATCTTATGAGATTCTTGACGTGACCGAACACAACCCGTTTAGTAACATTATTATTTGAAATTTTGAATATAGGAATGAGTTAAAAATGACTGTTATAGTCAATTTAATATGCCTACATTTTTGGTACTTGATCAAGTAGAGAGCTAAGAAACTTCTCGAAAAATAAATGTCTATCCAATGTATTTCGTGTAGATTTTCGGACTGAACCAAACCAAGTCCTGCACCACCATTTTTGGTTATAGATCAAACGACAAGCACCATCACCTCCTTTTTGAGAGTTTTTGAGATAATAACACTACAAAGGGTAGGACTAATTGTTAAACTAATCATAATCCAAAAAGAAGAGCATAATTCGTCCCTGATTACACTCGTCCCTGATTACACCATCTTTGCTATGATCCTGATGCAGCTGAACTAGAAGAACAACAGGTCCTTTGCTAATCCTCCCCTCGAAGTCGTATCGTTAAATACGCTAAGAATTCAGATATTTGACATAATAAGCATGTCGATTAATCAAAACAAATCACCTCACCTCACCCTTTCAACTACTTGAGGCTGCAAAATCAGAAACCTTGTATCCCTGTGTAAATCTTTTCAATTTTGCAGTTTCACCCACGGAAGAAAGCCATTCTGTTAAAATCTCCATTGTTATATAATCAGCATTACACGCTTGTTCCACCATTCTATCCATAACTTCTAACGCTTTCTCCAACCATTTCTTCTCCTTAAGCCCTTTCAAAATAGCATTATATGTTGTGGTGTTCGGCTTAACCCCGTTAACGTTCATATCGTCAAATAGAGCAAGAGCGGAACTGACCTCATTTCTTTTGCATAGAGAATCTATCAATATATTGTATATCACTGTGTTGGGAGGAACCTTTGATGTGGCGCTCATTTCCTTGAAAAGCTTCATGGCTTCATCAGTATTGTTGTTCAAGCAATATGCATGAATCACAGCTCCATAAGTGAAGACACTCGGTAAAAGACACGCCTCCTTGGTCATCTTTTCCATAAATTTAAAGGCTAATTCTAGATTCCCCATTTTACTGAAGTAAGAAATCAAAGTGTTGTATGTGACACTGTCAGGCTTGATTCCAACCACCTCCATTTCATCCAGCAATTCATTAGCTTCATCTAATTTGTTCTTCTTACAGAACTCACTGATAAGAAGATTGTAGCAAACAAGATCTAGTCGAAACCCTGCCGCTTTCATCCTCGACGCAACGGAGGTGGCATCATCCAACCTTCCAGCTTGGGCTAAACCACATATCAAAGTATAATAGACAATAGCATCAGGAAAACATCCAGCTTTGGACATTTCATCAAAAAATTCTATTGCCTTATCAATATTGTTCACTTTGCAAAAAGCATTAATGAACACCGTGTAAGTAACAGAATTTCCTTTCAAGCCCTTCTGCTGCATTTCCCTGAAGAACTCAACCGCGCTGCTTATTCTGCCATGCTTGCACATTCCATCAACTAAAGTATTGAGGGTGATTACATTTGGCACGACTTGTTCATTGACCATCTCGTTATAGAGCGCATGGGCTGGCTCGATTGCGCCTGCCTTACAGTACCCATCAATCAAACAATTGTAGGTAACGGTATTGGGTTTACAGCCATCAGATCTCATTGTTCCCAGCAAGCGCAATCCTTCTTCTTGTCTACCCACTTTACAGAGCCCATCAATCAATGTATTGTAAGTGATTGCATCAGGCGCAACGGCCTTGGCCTCCTCCTTTTCGCCCTTCATTTTCTCAAACACCTCTAGTGCATCATCAATCATTCTGAACTTACACATATGGTTGATAAGAATACCAAAAGTTATAACATTAGGTTGAACATTCATGTCCTTCATCTTTCGCATTAGCAAATTCATTTTCTCAAATTCCCTCTCCTTTCCCAAACCTGTTAAGAGCGCATTGCAGGGTGCAGCATCTTTAAGACCATTCCATGTCATCAAATCATCTAAAACACTCCATGCAAGATCGATATTTCTACTCCTACAAAGCTTGGAGATCAACTGGGTTAATGTAATGGGATTAGGAACAACATGGTGTTTACCAAATTTGGCTACCAACCCAGCAATTTCATTTTCCTTGACTCTCCAATCCGACCCATTTATCTTCAACAATTTAGTGAAAACAATATCAGCAGTTATATCATTGGGTCGAAACTCCGAATCTGGAAGCAGCATTTCGTCGAGCACATTCAATGCATTATCAACTCGCCCAGATTTCAGAAGCAAATCAATGATCACATTACGAACATATGTGTTTTTCTTATGTGGATCAAGTTCAGAGAACACAGCAAGCGCCTTATCAACCATGCCAGACCTTCCAAGACGCCGAAGCAGATTAACAGCATTCTGGGCTGTCGAGTGAGCCATTTCTGCTCCTTTAAGGTCTCGTAAAGCTCAAAAATCAAATTCGGTTAACTGGGTTCTCGAATAGGGAGATCAATAATGGCCTGGAAAGGAGAAGACAACAAACGCCGATCAGTTCCAGGGATAAGATAAATCATCTCGAACATAATTTCAAAAAAAAAAATAATTAAGAATTGTTGAAATGAGAGAGAGAGAGAGAGAGAGATCCAAATAGAATTCTCGGTCCTCA

Coding sequence (CDS)

ATGACTAGTGGGGTTACACCTTCAGTTTCCCCATCCCATTTCTCAATTCTTCACTCTAAACCAAAGATTACCCACTTTTCATCTCCTTCAAATCTCAAATTTCGACCGATTTCACCAATTGGGTCTCCCAGATTCGTAGTCCGTTGCAGCTCTGGTGATGGCGACAGCAGGACTGTTCTAAATGCCTTTTTCTTAGGAAAAGCTTTAGCAGAAGCCTTAACCGAGCGCGTTGAGTCAACAATTGGAGAAGTTTTGAGTGGGATTGGTAGGCTGCAAGCTGAACAACAAAAACAAATTCTTGATTTCCAGGAGGAGGTGATAGAAAGAGCCAAAAAAGCCCAGGAAAAAGCAGCACGTGATGCCAAAGAAGTACAAGGTCCGATCTCTTCTTCTTCTTCGATAAGATCGCCTACAATCGAAGTTGCTTCATCGTCGACTAGTTCGACCAACCAACAACAACTCTCGAATCCAGGCTCTGATTCAGGAACTGCTCCGAACCAGGATCCTCCTCTTGGTGGCGAAGAGTAA

Protein sequence

MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQEEVIERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPGSDSGTAPNQDPPLGGEE
Homology
[Close]
BLAST of Cp4.1LG17g09740 vs. ExPASy Swiss-Prot
Match: Q8LDV3 (Uncharacterized protein At4g13200, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g13200 PE=1 SV=2)

HSP 1 Score: 97.8 bits (242), Expect = 1.3e-19
Identity = 75/178 (42.13%), Postives = 110/178 (61.80%), Query Frame = 0 

Query: 10  SPSHFSILHSKPKITHFS-----SPSNLKFRPI-----SPIGSPRFVVRCS-----SGDG 69
           SPS FS+ +S  + +  S     S SN +F  +     S   S      CS     SG+ 
Sbjct: 8   SPSSFSLSNSYNQTSPHSFTLRNSRSNFEFHRLRLDVESRRRSTSLRSNCSTKGTDSGEN 67

Query: 70  DSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQEEVIERAKKAQ 129
           ++++VL+AFFLGKALAE + ER+EST+GEVLS IG+ QAEQQKQ+ + QEEV+ERAKKA+
Sbjct: 68  ENKSVLDAFFLGKALAEVINERIESTVGEVLSTIGKFQAEQQKQVQEIQEEVLERAKKAK 127

Query: 130 EKAARDAKEVQGPISSS--SSIRSPTIEVASS--STSSTNQQQLSNPGSDSGTAPNQD 169
           E+AAR+  E QG ++S   +  R+P   V +S  STS+   + +     +S ++ ++D
Sbjct: 128 ERAARETMEEQGLVASKPVAITRNPDAVVVASVTSTSTVESKTIMVDVEESSSSSDED 185

[Close]
BLAST of Cp4.1LG17g09740 vs. ExPASy Swiss-Prot
Match: P73628 (Thylakoid protein sll1769 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll1769 PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 6.8e-05
Identity = 29/72 (40.28%), Postives = 41/72 (56.94%), Query Frame = 0 

Query: 59  VLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQEEVIERAKKAQEKAA 118
           VL AFFLG+A AE L+E+VE  +   LS +G+  AEQ++ +  F  EV  RA     +  
Sbjct: 5   VLQAFFLGRAFAEVLSEKVEDGVTNALSELGKFDAEQRENLRQFIAEVQSRAANDVTQEG 64

Query: 119 RDAKEVQGPISS 131
                V GP+S+
Sbjct: 65  AAIATVDGPVSA 76

[Close]
BLAST of Cp4.1LG17g09740 vs. NCBI nr
Match: XP_023514675.1 (uncharacterized protein At4g13200, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 320 bits (821), Expect = 7.05e-110
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0 

Query: 1   MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVL 60
           MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVL
Sbjct: 1   MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVL 60

Query: 61  NAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQEEVIERAKKAQEKAARD 120
           NAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQEEVIERAKKAQEKAARD
Sbjct: 61  NAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQEEVIERAKKAQEKAARD 120

Query: 121 AKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPGSDSGTAPNQDPPLGGEE 175
           AKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPGSDSGTAPNQDPPLGGEE
Sbjct: 121 AKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPGSDSGTAPNQDPPLGGEE 175

[Close]
BLAST of Cp4.1LG17g09740 vs. NCBI nr
Match: XP_022960100.1 (uncharacterized protein At4g13200, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 318 bits (815), Expect = 5.79e-109
Identity = 173/175 (98.86%), Postives = 174/175 (99.43%), Query Frame = 0 

Query: 1   MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVL 60
           MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVL
Sbjct: 1   MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVL 60

Query: 61  NAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQEEVIERAKKAQEKAARD 120
           NAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQ LDFQEEV+ERAKKAQEKAARD
Sbjct: 61  NAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQFLDFQEEVLERAKKAQEKAARD 120

Query: 121 AKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPGSDSGTAPNQDPPLGGEE 175
           AKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPGSDSGTAPNQDPPLGGEE
Sbjct: 121 AKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPGSDSGTAPNQDPPLGGEE 175

[Close]
BLAST of Cp4.1LG17g09740 vs. NCBI nr
Match: KAG6592865.1 (putative protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025272.1 putative protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 317 bits (813), Expect = 1.17e-108
Identity = 173/175 (98.86%), Postives = 174/175 (99.43%), Query Frame = 0 

Query: 1   MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVL 60
           MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVL
Sbjct: 1   MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVL 60

Query: 61  NAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQEEVIERAKKAQEKAARD 120
           NAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQEEV+ERAKKAQEKAARD
Sbjct: 61  NAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQEEVLERAKKAQEKAARD 120

Query: 121 AKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPGSDSGTAPNQDPPLGGEE 175
           AKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNP SDSGTAPNQDPPLGGEE
Sbjct: 121 AKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPSSDSGTAPNQDPPLGGEE 175

[Close]
BLAST of Cp4.1LG17g09740 vs. NCBI nr
Match: XP_023005089.1 (uncharacterized protein At4g13200, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 309 bits (792), Expect = 1.86e-105
Identity = 170/175 (97.14%), Postives = 171/175 (97.71%), Query Frame = 0 

Query: 1   MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVL 60
           MTSGVTPSVSPSHFSILHSKPKITH SSPSNLKFRPISPIGSPRFVVRCSSGD DSRTVL
Sbjct: 1   MTSGVTPSVSPSHFSILHSKPKITHLSSPSNLKFRPISPIGSPRFVVRCSSGDDDSRTVL 60

Query: 61  NAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQEEVIERAKKAQEKAARD 120
           NAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQEEVIERAKKAQEKAARD
Sbjct: 61  NAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQEEVIERAKKAQEKAARD 120

Query: 121 AKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPGSDSGTAPNQDPPLGGEE 175
           AKEVQGPISSSSSIRSPTIEVASSST+STNQQQLSNP SDSGTAPNQDPPLG EE
Sbjct: 121 AKEVQGPISSSSSIRSPTIEVASSSTTSTNQQQLSNPSSDSGTAPNQDPPLGDEE 175

[Close]
BLAST of Cp4.1LG17g09740 vs. NCBI nr
Match: XP_038900031.1 (uncharacterized protein At4g13200, chloroplastic [Benincasa hispida])

HSP 1 Score: 238 bits (607), Expect = 4.22e-77
Identity = 141/189 (74.60%), Postives = 155/189 (82.01%), Query Frame = 0 

Query: 1   MTSGVTPSVSPSHFSILHSKPKITHFSS-----------PSNLKFRPIS---PIGSPRFV 60
           M+SGVT SVS S FS++ +KPKITH+SS           PSNLKFR IS   P GSPRF+
Sbjct: 1   MSSGVTSSVSQSPFSLVPTKPKITHYSSQSLLLFRSSSTPSNLKFRRISHFQPNGSPRFI 60

Query: 61  VRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQEEV 120
            RCSSGDGDSRTVL+AFFLGKALAEALTER+EST+GEVLSGIGRLQAEQQKQI DFQEEV
Sbjct: 61  ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTVGEVLSGIGRLQAEQQKQITDFQEEV 120

Query: 121 IERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPGSDSGTAPN 175
           IERAKKA++KAARDAKEVQGP+SSS  I SPTIEV SS T STN+QQLSNP  DS T  N
Sbjct: 121 IERAKKAKDKAARDAKEVQGPVSSS--ITSPTIEVTSSPTPSTNRQQLSNPDQDSETVVN 180

[Close]
BLAST of Cp4.1LG17g09740 vs. ExPASy TrEMBL
Match: A0A6J1H854 (uncharacterized protein At4g13200, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111460951 PE=4 SV=1)

HSP 1 Score: 318 bits (815), Expect = 2.81e-109
Identity = 173/175 (98.86%), Postives = 174/175 (99.43%), Query Frame = 0 

Query: 1   MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVL 60
           MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVL
Sbjct: 1   MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVL 60

Query: 61  NAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQEEVIERAKKAQEKAARD 120
           NAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQ LDFQEEV+ERAKKAQEKAARD
Sbjct: 61  NAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQFLDFQEEVLERAKKAQEKAARD 120

Query: 121 AKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPGSDSGTAPNQDPPLGGEE 175
           AKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPGSDSGTAPNQDPPLGGEE
Sbjct: 121 AKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPGSDSGTAPNQDPPLGGEE 175

[Close]
BLAST of Cp4.1LG17g09740 vs. ExPASy TrEMBL
Match: A0A6J1KY61 (uncharacterized protein At4g13200, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111498180 PE=4 SV=1)

HSP 1 Score: 309 bits (792), Expect = 9.00e-106
Identity = 170/175 (97.14%), Postives = 171/175 (97.71%), Query Frame = 0 

Query: 1   MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVL 60
           MTSGVTPSVSPSHFSILHSKPKITH SSPSNLKFRPISPIGSPRFVVRCSSGD DSRTVL
Sbjct: 1   MTSGVTPSVSPSHFSILHSKPKITHLSSPSNLKFRPISPIGSPRFVVRCSSGDDDSRTVL 60

Query: 61  NAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQEEVIERAKKAQEKAARD 120
           NAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQEEVIERAKKAQEKAARD
Sbjct: 61  NAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQEEVIERAKKAQEKAARD 120

Query: 121 AKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPGSDSGTAPNQDPPLGGEE 175
           AKEVQGPISSSSSIRSPTIEVASSST+STNQQQLSNP SDSGTAPNQDPPLG EE
Sbjct: 121 AKEVQGPISSSSSIRSPTIEVASSSTTSTNQQQLSNPSSDSGTAPNQDPPLGDEE 175

[Close]
BLAST of Cp4.1LG17g09740 vs. ExPASy TrEMBL
Match: A0A0A0K6Q2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G337600 PE=4 SV=1)

HSP 1 Score: 202 bits (515), Expect = 1.49e-63
Identity = 127/186 (68.28%), Postives = 144/186 (77.42%), Query Frame = 0 

Query: 1   MTSGVTPSVSPSHFSILHSKPKITHFS-----------SPSNLKFRPIS---PIGSPRFV 60
           M+SGVT SVS S FS++ +KPKITH+S           +PSNLKFR IS   P G  RF+
Sbjct: 1   MSSGVTSSVSQSPFSLVTTKPKITHYSPPSLLLFRSSSTPSNLKFRGISHFQPNGPSRFL 60

Query: 61  VRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQEEV 120
            RCSSGDGDSRTVL+AFFLGKALAEALTER+ESTIGEVLSGIGRLQAEQQKQI DFQ+EV
Sbjct: 61  ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLSGIGRLQAEQQKQITDFQDEV 120

Query: 121 IERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPGSDSGTAPN 172
           IERAKKA+EKAARD+KEVQGP+SSS  + SP IEV SS TSS+       P +DS +  N
Sbjct: 121 IERAKKAKEKAARDSKEVQGPVSSS--VISPKIEVFSSPTSSS-------PDADSESVVN 177

[Close]
BLAST of Cp4.1LG17g09740 vs. ExPASy TrEMBL
Match: A0A1S3BHX5 (uncharacterized protein At4g13200, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489747 PE=4 SV=1)

HSP 1 Score: 199 bits (505), Expect = 4.93e-62
Identity = 124/186 (66.67%), Postives = 145/186 (77.96%), Query Frame = 0 

Query: 1   MTSGVTPSVSPSHFSILHSKPKITHFSSPS-----------NLKFRPIS---PIGSPRFV 60
           M+S +T SVS S FS++ +KPKITH+SSPS           NL+FR IS   P GS R +
Sbjct: 1   MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNGSSRLL 60

Query: 61  VRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQEEV 120
            RCSSGDGDSRT+L+AFFLGKALAEALTER+ESTIGEVLSGIG+LQAEQQKQI DFQ+EV
Sbjct: 61  ARCSSGDGDSRTILDAFFLGKALAEALTERIESTIGEVLSGIGKLQAEQQKQITDFQDEV 120

Query: 121 IERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPGSDSGTAPN 172
           IERAKKA+EKAAR+AKEVQ P+SSS  + SPTIEV+SS TSS+       P +DS +  N
Sbjct: 121 IERAKKAKEKAAREAKEVQRPVSSS--VISPTIEVSSSPTSSS-------PDADSESGVN 177

[Close]
BLAST of Cp4.1LG17g09740 vs. ExPASy TrEMBL
Match: A0A6J1JX27 (uncharacterized protein At4g13200, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111488248 PE=4 SV=1)

HSP 1 Score: 199 bits (505), Expect = 5.43e-62
Identity = 123/183 (67.21%), Postives = 140/183 (76.50%), Query Frame = 0 

Query: 1   MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPIS--------PIGSPRFVVRCSSG 60
           M+SGV  SVSPS FS+L ++ KITH SSPS ++FR  S        P GS RF+  CSSG
Sbjct: 1   MSSGVASSVSPSLFSVLPTRSKITHCSSPSLVRFRSSSTSSNLKFRPNGSLRFIASCSSG 60

Query: 61  DGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQEEVIERAKK 120
           DGD+RTVL+AFFLGKA AE LTERVEST+GEVLS IGRLQAE+Q+QI+DFQEEVIERAKK
Sbjct: 61  DGDNRTVLDAFFLGKAFAETLTERVESTVGEVLSEIGRLQAERQQQIIDFQEEVIERAKK 120

Query: 121 AQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPGSDSGTAPNQDPPLG 175
           A+EKA RDAKE QGPISSS  I S TIEV SS T S+N QQ S+  + S T  NQDPP G
Sbjct: 121 AKEKAERDAKEAQGPISSS--ILSATIEVTSSPTGSSNGQQRSSLNAYSETVVNQDPPRG 180

[Close]
BLAST of Cp4.1LG17g09740 vs. TAIR 10
Match: AT4G13200.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 97 Blast hits to 97 proteins in 46 species: Archae - 0; Bacteria - 65; Metazoa - 2; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 97.8 bits (242), Expect = 9.0e-21
Identity = 75/178 (42.13%), Postives = 110/178 (61.80%), Query Frame = 0 

Query: 10  SPSHFSILHSKPKITHFS-----SPSNLKFRPI-----SPIGSPRFVVRCS-----SGDG 69
           SPS FS+ +S  + +  S     S SN +F  +     S   S      CS     SG+ 
Sbjct: 8   SPSSFSLSNSYNQTSPHSFTLRNSRSNFEFHRLRLDVESRRRSTSLRSNCSTKGTDSGEN 67

Query: 70  DSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQEEVIERAKKAQ 129
           ++++VL+AFFLGKALAE + ER+EST+GEVLS IG+ QAEQQKQ+ + QEEV+ERAKKA+
Sbjct: 68  ENKSVLDAFFLGKALAEVINERIESTVGEVLSTIGKFQAEQQKQVQEIQEEVLERAKKAK 127

Query: 130 EKAARDAKEVQGPISSS--SSIRSPTIEVASS--STSSTNQQQLSNPGSDSGTAPNQD 169
           E+AAR+  E QG ++S   +  R+P   V +S  STS+   + +     +S ++ ++D
Sbjct: 128 ERAARETMEEQGLVASKPVAITRNPDAVVVASVTSTSTVESKTIMVDVEESSSSSDED 185

The following BLAST results are available for this feature:
BLAST of Cp4.1LG17g09740 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8LDV31.3e-1942.13Uncharacterized protein At4g13200, chloroplastic OS=Arabidopsis thaliana OX=3702... [more]
P736286.8e-0540.28Thylakoid protein sll1769 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=111... [more]
BLAST of Cp4.1LG17g09740 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023514675.17.05e-110100.00uncharacterized protein At4g13200, chloroplastic-like [Cucurbita pepo subsp. pep... [more]
XP_022960100.15.79e-10998.86uncharacterized protein At4g13200, chloroplastic-like [Cucurbita moschata][more]
KAG6592865.11.17e-10898.86putative protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]... [more]
XP_023005089.11.86e-10597.14uncharacterized protein At4g13200, chloroplastic-like [Cucurbita maxima][more]
XP_038900031.14.22e-7774.60uncharacterized protein At4g13200, chloroplastic [Benincasa hispida][more]
BLAST of Cp4.1LG17g09740 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1H8542.81e-10998.86uncharacterized protein At4g13200, chloroplastic-like OS=Cucurbita moschata OX=3... [more]
A0A6J1KY619.00e-10697.14uncharacterized protein At4g13200, chloroplastic-like OS=Cucurbita maxima OX=366... [more]
A0A0A0K6Q21.49e-6368.28Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G337600 PE=4 SV=1[more]
A0A1S3BHX54.93e-6266.67uncharacterized protein At4g13200, chloroplastic isoform X1 OS=Cucumis melo OX=3... [more]
A0A6J1JX275.43e-6267.21uncharacterized protein At4g13200, chloroplastic-like OS=Cucurbita maxima OX=366... [more]
BLAST of Cp4.1LG17g09740 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G13200.19.0e-2142.13unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 93..120
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 114..175
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 125..166
IPR040003Plastoglobular protein 18-likePANTHERPTHR35745BNACNNG14650D PROTEINcoord: 17..161

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG17g09740.1Cp4.1LG17g09740.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010027 thylakoid membrane organization
cellular_component GO:0009535 chloroplast thylakoid membrane