Cp4.1LG17g09510 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG17g09510
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description40S ribosomal protein S27
LocationCp4.1LG17: 7270571 .. 7272002 (+)
RNA-Seq ExpressionCp4.1LG17g09510
SyntenyCp4.1LG17g09510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTTTCTTTTGACAGGGAAGAACATTTTACTTAAATTTGTGAATGGACGGTTATACCCTTCAGTTCATGGCCATGCGTAGCCCTAGGCACTTCAGAGACTAAAGGCTGAGATTTATTTCTAACGAAATCCAACGGTTCAAAATTTCCAGCTGCTCCCTTATATTCTTACTAGACGGCGCTATATCGCTTTTTTATAACGTTCATTGCACCGCCCTGATTCTTTCGCGAACTCTCGTTGGGATTCTAGGGTTCGCGATCCAGACAGTTCCTTACTGATCAACATGGTAAACTTCCTGCTACATTCGATTATGCCTTTTTTTCTCTTCTGAATTTGGATCCAACAATTTTCACTTTCTTTCACGCTATTTTCAGGTTCTTCAAAACGATATTGATTTGCTTAATCCTCCGGCCGAACTTGAGAAGAGAAAGCATAAGCTCAAGCGTCTCGTACAGTCGCCCAACTCATTCTTCATGGTTTGCTCTTTCGTTTAAATTCTTTTTGCTTTGTTTGATCTAATAATCTTTTCTCCGACAATGGTGATCGAGCTGTTTTGTGATTTCTGTGGGCAGGACGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTTTCATCTTTTCTCATGTATTATGGTTATGTGACCTTTCTTTTTTCTGCAAGTTGTTGAAGTTGGGTTCTTAAGTGAGTAATGGCACATAACTCTTTGAATGAATAACAGAACCACTGTATTCAGTCATTCACAGACAGTCGTGGTATGTGGGAATTGCCAGTCGGTCTTGTGCCAGCCAACTGGAGGGCGCGCTAGGCTAACAGAAGGCTGCTCCTTCAGAAGAAAGGGTGACTAATTCCTTGGCCCCAGAATTGGCTTTTAGTAGGATCAGGATGGATGGGTTTGAATTTTGATATTGCAATTGAGCACAATTTTTCTTTGTCTCGGGTTTTCTACGTTTTGCATGTTGATTATTCAATTTTGCTTGAGAAGAGGAGCATTTTGTCCCCGTTGTTGCAGTACGTTAATTTTCATGTTTTCAATGAAACTAAACTTTGTTTGAAGTAATTCACACATCAGTTGTATTGCGTGTTATCCAGTACTTCTTTAATTGATCGAACTGTTTTGATTTGGCTGCCATTATTCCACGAGTTATGAACTTAGATCCTATTTTCTGATGCTTTTAGTGTTGGAAATATTGGATTGATATTTGTTATTTATCAGATAGTTAATTCAAAGTCATCGGGAATTCTTGTTTTTATCTCAATGTCAGGGAGTGGTTGTCTATTTGTTCCCCTTGATCCTTATTTTCAATTGTTCTTATCGTCTTTTTCTGGTGTGCTTGTCGTTTTTGTACTACTAAGTAGCATCCATCGAACGAGTGTCGCAGAGAATGTTTGATACTATATTCTGACATATTTTTGGTCCTGTGGTCTAATGTTTGG

mRNA sequence

AATTTTCTTTTGACAGGGAAGAACATTTTACTTAAATTTGTGAATGGACGGTTATACCCTTCAGTTCATGGCCATGCGTAGCCCTAGGCACTTCAGAGACTAAAGGCTGAGATTTATTTCTAACGAAATCCAACGGTTCAAAATTTCCAGCTGCTCCCTTATATTCTTACTAGACGGCGCTATATCGCTTTTTTATAACGTTCATTGCACCGCCCTGATTCTTTCGCGAACTCTCGTTGGGATTCTAGGGTTCGCGATCCAGACAGTTCCTTACTGATCAACATGGTTCTTCAAAACGATATTGATTTGCTTAATCCTCCGGCCGAACTTGAGAAGAGAAAGCATAAGCTCAAGCGTCTCGTACAGTCGCCCAACTCATTCTTCATGGACGTGAAGTGCCAGGGTTGCTTTAACATAACCACTGTATTCAGTCATTCACAGACAGTCGTGGTATGTGGGAATTGCCAGTCGGTCTTGTGCCAGCCAACTGGAGGGCGCGCTAGGCTAACAGAAGGCTGCTCCTTCAGAAGAAAGGGTGACTAATTCCTTGGCCCCAGAATTGGCTTTTAGTAGGATCAGGATGGATGGGTTTGAATTTTGATATTGCAATTGAGCACAATTTTTCTTTGTCTCGGGTTTTCTACGTTTTGCATGTTGATTATTCAATTTTGCTTGAGAAGAGGAGCATTTTGTCCCCGTTGTTGCAGTACGTTAATTTTCATGTTTTCAATGAAACTAAACTTTGTTTGAAGTAATTCACACATCAGTTGTATTGCGTGTTATCCAGTACTTCTTTAATTGATCGAACTGTTTTGATTTGGCTGCCATTATTCCACGAGTTATGAACTTAGATCCTATTTTCTGATGCTTTTAGTGTTGGAAATATTGGATTGATATTTGTTATTTATCAGATAGTTAATTCAAAGTCATCGGGAATTCTTGTTTTTATCTCAATGTCAGGGAGTGGTTGTCTATTTGTTCCCCTTGATCCTTATTTTCAATTGTTCTTATCGTCTTTTTCTGGTGTGCTTGTCGTTTTTGTACTACTAAGTAGCATCCATCGAACGAGTGTCGCAGAGAATGTTTGATACTATATTCTGACATATTTTTGGTCCTGTGGTCTAATGTTTGG

Coding sequence (CDS)

ATGGTTCTTCAAAACGATATTGATTTGCTTAATCCTCCGGCCGAACTTGAGAAGAGAAAGCATAAGCTCAAGCGTCTCGTACAGTCGCCCAACTCATTCTTCATGGACGTGAAGTGCCAGGGTTGCTTTAACATAACCACTGTATTCAGTCATTCACAGACAGTCGTGGTATGTGGGAATTGCCAGTCGGTCTTGTGCCAGCCAACTGGAGGGCGCGCTAGGCTAACAGAAGGCTGCTCCTTCAGAAGAAAGGGTGACTAA

Protein sequence

MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD
Homology
[Close]
BLAST of Cp4.1LG17g09510 vs. ExPASy Swiss-Prot
Match: Q9M2F1 (40S ribosomal protein S27-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27B PE=2 SV=2)

HSP 1 Score: 177.9 bits (450), Expect = 4.7e-44
Identity = 82/86 (95.35%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 87
          CQ++LCQPTGG+A+LTEGCSFRRKGD
Sbjct: 61 CQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]
BLAST of Cp4.1LG17g09510 vs. ExPASy Swiss-Prot
Match: Q96564 (40S ribosomal protein S27 OS=Hordeum vulgare OX=4513 GN=RPS27 PE=3 SV=2)

HSP 1 Score: 169.1 bits (427), Expect = 2.2e-41
Identity = 80/86 (93.02%), Postives = 82/86 (95.35%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC  
Sbjct: 1  MVLQNDIDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPG 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 87
          CQ+VLCQPTGG+ARLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGKARLTEGCSFRRKGD 86

[Close]
BLAST of Cp4.1LG17g09510 vs. ExPASy Swiss-Prot
Match: O64650 (40S ribosomal protein S27-1 OS=Arabidopsis thaliana OX=3702 GN=RPS27A PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 4.9e-41
Identity = 77/84 (91.67%), Postives = 83/84 (98.81%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRK 85
          CQ++LC PTGG+A+LTEGCSFR+K
Sbjct: 61 CQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]
BLAST of Cp4.1LG17g09510 vs. ExPASy Swiss-Prot
Match: Q8L953 (40S ribosomal protein S27-3 OS=Arabidopsis thaliana OX=3702 GN=RPS27D PE=2 SV=2)

HSP 1 Score: 167.5 bits (423), Expect = 6.4e-41
Identity = 78/84 (92.86%), Postives = 82/84 (97.62%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRK 85
          CQ+VLCQPTGG+ARL EGCSFR+K
Sbjct: 61 CQTVLCQPTGGKARLQEGCSFRKK 84

[Close]
BLAST of Cp4.1LG17g09510 vs. ExPASy Swiss-Prot
Match: P47903 (40S ribosomal protein S27 OS=Chlamydomonas reinhardtii OX=3055 GN=RPS27 PE=3 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.9e-37
Identity = 74/86 (86.05%), Postives = 77/86 (89.53%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVL +DIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CG+
Sbjct: 1  MVLSSDIDLLNPPAELEKTKHKRKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGS 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 87
          C SVLC PTG   RLTEGCSFRRK D
Sbjct: 61 CSSVLCTPTGWPRRLTEGCSFRRKSD 86

[Close]
BLAST of Cp4.1LG17g09510 vs. NCBI nr
Match: XP_022960233.1 (40S ribosomal protein S27-2-like [Cucurbita moschata] >XP_023004242.1 40S ribosomal protein S27-2-like [Cucurbita maxima] >XP_023513990.1 40S ribosomal protein S27-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 181 bits (460), Expect = 1.10e-57
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 86
          CQSVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 86

[Close]
BLAST of Cp4.1LG17g09510 vs. NCBI nr
Match: XP_006446889.1 (40S ribosomal protein S27-2 [Citrus clementina] >XP_006446892.1 40S ribosomal protein S27-2 [Citrus clementina] >XP_006468930.1 40S ribosomal protein S27-2 [Citrus sinensis] >XP_006468931.1 40S ribosomal protein S27-2 [Citrus sinensis] >GAY61583.1 hypothetical protein CUMW_211090 [Citrus unshiu] >ESR60129.1 hypothetical protein CICLE_v10017335mg [Citrus clementina] >ESR60132.1 hypothetical protein CICLE_v10017332mg [Citrus clementina] >GAY65076.1 hypothetical protein CUMW_238430 [Citrus unshiu] >GAY65077.1 hypothetical protein CUMW_238430 [Citrus unshiu])

HSP 1 Score: 180 bits (457), Expect = 3.15e-57
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 86
          CQSVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 86

[Close]
BLAST of Cp4.1LG17g09510 vs. NCBI nr
Match: XP_002512685.1 (40S ribosomal protein S27-2 [Ricinus communis] >XP_002519401.1 40S ribosomal protein S27-2 [Ricinus communis] >XP_004143769.1 40S ribosomal protein S27-2 [Cucumis sativus] >XP_008465377.1 PREDICTED: 40S ribosomal protein S27-2-like [Cucumis melo] >XP_010028919.1 40S ribosomal protein S27-2 [Eucalyptus grandis] >XP_010057712.1 40S ribosomal protein S27-2 [Eucalyptus grandis] >XP_012078870.1 40S ribosomal protein S27-2 [Jatropha curcas] >XP_018829355.1 40S ribosomal protein S27-2 [Juglans regia] >XP_021660002.1 40S ribosomal protein S27-2 [Hevea brasiliensis] >XP_021680473.1 40S ribosomal protein S27-2 [Hevea brasiliensis] >XP_022141357.1 40S ribosomal protein S27-2 [Momordica charantia] >XP_022939288.1 40S ribosomal protein S27-2 [Cucurbita moschata] >XP_022952540.1 40S ribosomal protein S27-2 [Cucurbita moschata] >XP_022990942.1 40S ribosomal protein S27-2 [Cucurbita maxima] >XP_022993712.1 40S ribosomal protein S27-2 [Cucurbita maxima] >XP_023524061.1 40S ribosomal protein S27-2 [Cucurbita pepo subsp. pepo] >XP_023548719.1 40S ribosomal protein S27-2 [Cucurbita pepo subsp. pepo] >XP_023549571.1 40S ribosomal protein S27-2 [Cucurbita pepo subsp. pepo] >XP_023872417.1 40S ribosomal protein S27-2 [Quercus suber] >XP_030450730.1 40S ribosomal protein S27-2 [Syzygium oleosum] >XP_030452017.1 40S ribosomal protein S27-2 [Syzygium oleosum] >XP_030513362.1 40S ribosomal protein S27-2 [Rhodamnia argentea] >XP_030956657.1 40S ribosomal protein S27-2 [Quercus lobata] >XP_031276672.1 40S ribosomal protein S27-2 [Pistacia vera] >XP_031276714.1 40S ribosomal protein S27-2 [Pistacia vera] >XP_038906694.1 40S ribosomal protein S27-2-like [Benincasa hispida] >XP_041012643.1 40S ribosomal protein S27-2 [Juglans microcarpa x Juglans regia] >XP_042982589.1 40S ribosomal protein S27-2 [Carya illinoinensis] >KAA0066103.1 Ribosomal protein S27e [Cucumis melo var. makuwa] >KAF3943728.1 hypothetical protein CMV_029739 [Castanea mollissima] >KAF8013305.1 hypothetical protein BT93_I1220 [Corymbia citriodora subsp. variegata] >KAG6579093.1 40S ribosomal protein S27-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014613.1 40S ribosomal protein S27-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 180 bits (457), Expect = 3.15e-57
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 86
          CQ+VLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]
BLAST of Cp4.1LG17g09510 vs. NCBI nr
Match: XP_020587178.1 (40S ribosomal protein S27-2-like [Phalaenopsis equestris])

HSP 1 Score: 180 bits (457), Expect = 3.15e-57
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 86
          CQSVLCQPTGG+ARLTEGCSFRRKGD
Sbjct: 61 CQSVLCQPTGGKARLTEGCSFRRKGD 86

[Close]
BLAST of Cp4.1LG17g09510 vs. NCBI nr
Match: XP_031384267.1 (40S ribosomal protein S27-2 [Punica granatum])

HSP 1 Score: 180 bits (456), Expect = 4.47e-57
Identity = 84/86 (97.67%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQND+DLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDVDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 86
          CQ+VLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]
BLAST of Cp4.1LG17g09510 vs. ExPASy TrEMBL
Match: A0A6J1KPW3 (40S ribosomal protein S27 OS=Cucurbita maxima OX=3661 GN=LOC111497636 PE=3 SV=1)

HSP 1 Score: 181 bits (460), Expect = 5.31e-58
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 86
          CQSVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 86

[Close]
BLAST of Cp4.1LG17g09510 vs. ExPASy TrEMBL
Match: A0A6J1H892 (40S ribosomal protein S27 OS=Cucurbita moschata OX=3662 GN=LOC111461035 PE=3 SV=1)

HSP 1 Score: 181 bits (460), Expect = 5.31e-58
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 86
          CQSVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 86

[Close]
BLAST of Cp4.1LG17g09510 vs. ExPASy TrEMBL
Match: A0A6J1JTM3 (40S ribosomal protein S27 OS=Cucurbita maxima OX=3661 GN=LOC111489630 PE=3 SV=1)

HSP 1 Score: 180 bits (457), Expect = 1.52e-57
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 86
          CQ+VLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]
BLAST of Cp4.1LG17g09510 vs. ExPASy TrEMBL
Match: A0A2H5QKC8 (40S ribosomal protein S27 OS=Citrus unshiu OX=55188 GN=CUMW_211090 PE=3 SV=1)

HSP 1 Score: 180 bits (457), Expect = 1.52e-57
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 86
          CQSVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 86

[Close]
BLAST of Cp4.1LG17g09510 vs. ExPASy TrEMBL
Match: V4W2J8 (40S ribosomal protein S27 OS=Citrus clementina OX=85681 GN=CICLE_v10017332mg PE=3 SV=1)

HSP 1 Score: 180 bits (457), Expect = 1.52e-57
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 86
          CQSVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 86

[Close]
BLAST of Cp4.1LG17g09510 vs. TAIR 10
Match: AT3G61110.1 (ribosomal protein S27 )

HSP 1 Score: 177.9 bits (450), Expect = 3.4e-45
Identity = 82/86 (95.35%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 87
          CQ++LCQPTGG+A+LTEGCSFRRKGD
Sbjct: 61 CQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]
BLAST of Cp4.1LG17g09510 vs. TAIR 10
Match: AT2G45710.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 167.9 bits (424), Expect = 3.5e-42
Identity = 77/84 (91.67%), Postives = 83/84 (98.81%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRK 85
          CQ++LC PTGG+A+LTEGCSFR+K
Sbjct: 61 CQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]
BLAST of Cp4.1LG17g09510 vs. TAIR 10
Match: AT5G47930.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 167.5 bits (423), Expect = 4.6e-42
Identity = 78/84 (92.86%), Postives = 82/84 (97.62%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRK 85
          CQ+VLCQPTGG+ARL EGCSFR+K
Sbjct: 61 CQTVLCQPTGGKARLQEGCSFRKK 84

[Close]
BLAST of Cp4.1LG17g09510 vs. TAIR 10
Match: AT3G61111.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 150.6 bits (379), Expect = 5.8e-37
Identity = 70/86 (81.40%), Postives = 77/86 (89.53%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLV SPNS+FM V+C  C NITT+FSHSQTVVVCG 
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVPSPNSYFMLVRCSDCINITTIFSHSQTVVVCGK 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 87
          CQ+VLCQPTGG+A+LT GCSFR+  D
Sbjct: 61 CQNVLCQPTGGKAKLTVGCSFRKLTD 86

The following BLAST results are available for this feature:
BLAST of Cp4.1LG17g09510 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9M2F14.7e-4495.3540S ribosomal protein S27-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27B PE=2 SV=2[more]
Q965642.2e-4193.0240S ribosomal protein S27 OS=Hordeum vulgare OX=4513 GN=RPS27 PE=3 SV=2[more]
O646504.9e-4191.6740S ribosomal protein S27-1 OS=Arabidopsis thaliana OX=3702 GN=RPS27A PE=3 SV=1[more]
Q8L9536.4e-4192.8640S ribosomal protein S27-3 OS=Arabidopsis thaliana OX=3702 GN=RPS27D PE=2 SV=2[more]
P479031.9e-3786.0540S ribosomal protein S27 OS=Chlamydomonas reinhardtii OX=3055 GN=RPS27 PE=3 SV=... [more]
BLAST of Cp4.1LG17g09510 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022960233.11.10e-57100.0040S ribosomal protein S27-2-like [Cucurbita moschata] >XP_023004242.1 40S riboso... [more]
XP_006446889.13.15e-5798.8440S ribosomal protein S27-2 [Citrus clementina] >XP_006446892.1 40S ribosomal pr... [more]
XP_002512685.13.15e-5798.8440S ribosomal protein S27-2 [Ricinus communis] >XP_002519401.1 40S ribosomal pro... [more]
XP_020587178.13.15e-5798.8440S ribosomal protein S27-2-like [Phalaenopsis equestris][more]
XP_031384267.14.47e-5797.6740S ribosomal protein S27-2 [Punica granatum][more]
BLAST of Cp4.1LG17g09510 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KPW35.31e-58100.0040S ribosomal protein S27 OS=Cucurbita maxima OX=3661 GN=LOC111497636 PE=3 SV=1[more]
A0A6J1H8925.31e-58100.0040S ribosomal protein S27 OS=Cucurbita moschata OX=3662 GN=LOC111461035 PE=3 SV=... [more]
A0A6J1JTM31.52e-5798.8440S ribosomal protein S27 OS=Cucurbita maxima OX=3661 GN=LOC111489630 PE=3 SV=1[more]
A0A2H5QKC81.52e-5798.8440S ribosomal protein S27 OS=Citrus unshiu OX=55188 GN=CUMW_211090 PE=3 SV=1[more]
V4W2J81.52e-5798.8440S ribosomal protein S27 OS=Citrus clementina OX=85681 GN=CICLE_v10017332mg PE=... [more]
BLAST of Cp4.1LG17g09510 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G61110.13.4e-4595.35ribosomal protein S27 [more]
AT2G45710.13.5e-4291.67Zinc-binding ribosomal protein family protein [more]
AT5G47930.14.6e-4292.86Zinc-binding ribosomal protein family protein [more]
AT3G61111.15.8e-3781.40Zinc-binding ribosomal protein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023407Ribosomal protein S27, zinc-binding domain superfamilyGENE3D2.20.25.100coord: 5..85
e-value: 5.0E-49
score: 166.2
IPR000592Ribosomal protein S27PFAMPF01667Ribosomal_S27ecoord: 30..84
e-value: 2.4E-27
score: 94.4
IPR000592Ribosomal protein S27PANTHERPTHR1159440S RIBOSOMAL PROTEIN S27coord: 2..85
IPR000592Ribosomal protein S27PROSITEPS01168RIBOSOMAL_S27Ecoord: 38..70
IPR000592Ribosomal protein S27HAMAPMF_00371Ribosomal_S27ecoord: 24..84
score: 16.715874
NoneNo IPR availablePANTHERPTHR11594:SF740S RIBOSOMAL PROTEIN S27-RELATEDcoord: 2..85
IPR011332Zinc-binding ribosomal proteinSUPERFAMILY57829Zn-binding ribosomal proteinscoord: 30..84

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG17g09510.1Cp4.1LG17g09510.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000028 ribosomal small subunit assembly
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome