Cp4.1LG17g09200 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG17g09200
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionSerine/threonine-protein phosphatase
LocationCp4.1LG17: 7054831 .. 7056656 (-)
RNA-Seq ExpressionCp4.1LG17g09200
SyntenyCp4.1LG17g09200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAGTAAATTCTCTACCATTAGGCACATAAATTCAAGTTCCAACAACTTGCTCTTCCATTTACATTCTTCTTTATTCTNTTAATTTTTTTTTCATTCTTCTTTTTATCTTGTTTTTAATTTTTTTAATTTTCTTTTTATTTTTATTTTTTTTATCTTTTTTTCATTATTCCTTTTATTCTTATTCTGAAATTCTTTTTATATCTACCTTTTCATATTTTTTTTATTTTCTTTTCATTCTCTATCCTCATTTTTCTCTTTCGAGGGCAGGTAAACAGGTCCAGCTTTCCGAGAACGAGATCAATTTCNTATCCTCATTTTTCTCTTTCGAGGGCAGGTAAACAGGTCCAGCTTTCCGAGAACGAGATCAATTTCTTTTGTGCTTCTTCTAGAGAGATTTTGTCCAGCAACCTAATTTGCCGAGAACGAGATCAAGCTTTTTTGTGCTTCTTCTAGAGAGATTTTGTCCAGCAACCTAATTTGCCGAGTCGAGATCAAGCTTTTTTGTGCTTCTTCTAGAGAGATTTTGTCCAGCAACCTAATTTGCTTGAGCTTGAAGCACTACCAAATTTGTGGTGACATTCATGGGCAGTTCATTGATTCGTTAAGATTTTTTTAATACAGGGGTTTATACTTATTGCCAATTATTTTTCTTTTTGATTCCCTATTCCCTATTCTTCATTTCATTTTTTTTTCATTGTTATTTTTATTTTCTTTTCATCTTTTCTTTATGTTTTTATTTTGTTTTCATCTTTTTTTTTATTTCATTTTCATTTTTATTCTTTTTTTCATTTTCTTTTTATCTTCATTTTATTTTTACCCATTTTTTTTCAATTTTTTTTTATTTTCATTTTCCTTTTATTTTAATTATTCTTTTCATTTTATTTTCTTCTTATTTTGTTTCTATTTCGTTTCATATTCTATTTATTTTCTTTTTATTTTGTTTTCATATTATTTTTGTTTTCATCATTTTATTCATTTTCATTCTTATTTTAAATTTCTTTTCATTTTCTTTTTATTTTATTTTCATCTTTTCATTCCCTGTCTGCCCATTGTTCTTTTCATTATTTTTTTTCATTCTGCCTTTCATATTCTTTTCATTCTCTGTGCGCCCATTCTTCTTTTCATCTTCTGTCCGCGAGGGCAGGTAAACAGGTTCAACAATACGAGAACGAGATCAGGCTTCTAAATAGATTTTCGTTCAGCAACCCAATTTGCTTAAGCTTCAAGCACCTATTAAGATTTGTGGTGACATTGATGGACAGTTAACTGATTTGTTAAGACTTTTTGAATATGGGGTTTCCATTAGTATAAATTTTCTCTTCTTTTTTCATTACTTTCAGCTCATTCTTTTTTTCATTTTCATTTTATTTTTATTTTTATTTTCATCTTTTTTCGTTCTTCTTTTCAATTTTTTTTTTAATTTTCTTTTCATCTTATCTTTTATCTTCTTTTTATTTTGTTTTCATATTTTTTTATTTTCATTCTTTTTTTAATTTTTATTTTAATTTTCTTTTTATCCTCATTTTCTTTTCATTCTTATTTTTATTCTTTTTTTGAATTTCATTTTATTTCTCTATTTATTTTTTTTCATTCTCTTTTCATTATTCTTTTTATTTTCTTTTCATATTTTTTTCATTCTTCTTTTCATATTTTTTTCATTCTCTGTCCGTCCATTCTTCTTTTCATTTCCTGTCTGCTAGAGCAGGTAAACAGGTACAGCTTTCTGAGAACGAGATCAAGCTTTTTTGTGTTTCTTTCAGAGAGATTTTCGTCCAACAACCGAATTTGCTCGAGCTCGAAGCACCCATCAAAATTTGTTAA

mRNA sequence

ATGGCCAGTAAACAGGTTCAACAATACGAGAACGAGATCAGGCTTCTAAATAGATTTTCGTTCAGCAACCCAATTTGCTTAAGCTTCAAGCACCTATTAAGATTTGTGGTGACATTGATGGACAGTAAACAGGTACAGCTTTCTGAGAACGAGATCAAGCTTTTTTGTGTTTCTTTCAGAGAGATTTTCGTCCAACAACCGAATTTGCTCGAGCTCGAAGCACCCATCAAAATTTGTTAA

Coding sequence (CDS)

ATGGCCAGTAAACAGGTTCAACAATACGAGAACGAGATCAGGCTTCTAAATAGATTTTCGTTCAGCAACCCAATTTGCTTAAGCTTCAAGCACCTATTAAGATTTGTGGTGACATTGATGGACAGTAAACAGGTACAGCTTTCTGAGAACGAGATCAAGCTTTTTTGTGTTTCTTTCAGAGAGATTTTCGTCCAACAACCGAATTTGCTCGAGCTCGAAGCACCCATCAAAATTTGTTAA

Protein sequence

MASKQVQQYENEIRLLNRFSFSNPICLSFKHLLRFVVTLMDSKQVQLSENEIKLFCVSFREIFVQQPNLLELEAPIKIC
Homology
BLAST of Cp4.1LG17g09200 vs. ExPASy Swiss-Prot
Match: P48484 (Serine/threonine-protein phosphatase PP1 isozyme 4 OS=Arabidopsis thaliana OX=3702 GN=TOPP4 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.8e-09
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 0

Query: 43 KQVQLSENEIKLFCVSFREIFVQQPNLLELEAPIKIC 80
          KQVQLSE EIK  C + R+IF+QQPNLLELEAPIKIC
Sbjct: 36 KQVQLSEAEIKQLCTTARDIFLQQPNLLELEAPIKIC 72

BLAST of Cp4.1LG17g09200 vs. ExPASy Swiss-Prot
Match: P22198 (Serine/threonine-protein phosphatase PP1 OS=Zea mays OX=4577 GN=PP1 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-08
Identity = 29/44 (65.91%), Postives = 33/44 (75.00%), Query Frame = 0

Query: 36 VVTLMDSKQVQLSENEIKLFCVSFREIFVQQPNLLELEAPIKIC 80
          V  L   K  QLSE+EIK  C + +EIF+QQPNLLELEAPIKIC
Sbjct: 16 VKNLKPGKNAQLSESEIKQLCAAAKEIFLQQPNLLELEAPIKIC 59

BLAST of Cp4.1LG17g09200 vs. ExPASy Swiss-Prot
Match: P48489 (Serine/threonine-protein phosphatase PP1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0268000 PE=2 SV=2)

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-08
Identity = 30/44 (68.18%), Postives = 33/44 (75.00%), Query Frame = 0

Query: 36 VVTLMDSKQVQLSENEIKLFCVSFREIFVQQPNLLELEAPIKIC 80
          V T    KQVQLSE+EI+  C   REIF+ QPNLLELEAPIKIC
Sbjct: 30 VRTARPGKQVQLSESEIRQLCTVSREIFLSQPNLLELEAPIKIC 73

BLAST of Cp4.1LG17g09200 vs. ExPASy Swiss-Prot
Match: P48480 (Serine/threonine-protein phosphatase PP1 isozyme 1 OS=Acetabularia peniculus OX=35862 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.6e-08
Identity = 26/37 (70.27%), Postives = 33/37 (89.19%), Query Frame = 0

Query: 43 KQVQLSENEIKLFCVSFREIFVQQPNLLELEAPIKIC 80
          KQVQL+E+EI+L C++ +EI  +QPNLLELEAPIKIC
Sbjct: 23 KQVQLTESEIRLLCLTSKEILSEQPNLLELEAPIKIC 59

BLAST of Cp4.1LG17g09200 vs. ExPASy Swiss-Prot
Match: P48482 (Serine/threonine-protein phosphatase PP1 isozyme 2 OS=Arabidopsis thaliana OX=3702 GN=TOPP2 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.6e-08
Identity = 26/38 (68.42%), Postives = 32/38 (84.21%), Query Frame = 0

Query: 42 SKQVQLSENEIKLFCVSFREIFVQQPNLLELEAPIKIC 80
          +KQ  L+E+EI+  C+  REIF+QQPNLLELEAPIKIC
Sbjct: 31 TKQAMLNESEIRQLCIVSREIFLQQPNLLELEAPIKIC 68

BLAST of Cp4.1LG17g09200 vs. NCBI nr
Match: KAG6578428.1 (Serine/threonine-protein phosphatase PP1 isozyme 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 65.9 bits (159), Expect = 2.88e-11
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 0

Query: 43 KQVQLSENEIKLFCVSFREIFVQQPNLLELEAPIKIC 79
          KQVQLSENEIK  CV+ REIF+QQPNLLELEAPIKIC
Sbjct: 31 KQVQLSENEIKQLCVASREIFIQQPNLLELEAPIKIC 67

BLAST of Cp4.1LG17g09200 vs. NCBI nr
Match: KAG6600976.1 (Serine/threonine-protein phosphatase PP1 isozyme 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.2 bits (165), Expect = 2.99e-11
Identity = 34/37 (91.89%), Postives = 34/37 (91.89%), Query Frame = 0

Query: 43 KQVQLSENEIKLFCVSFREIFVQQPNLLELEAPIKIC 79
          KQVQLSENEIKL C S REIFVQQPNLLELEAPIKIC
Sbjct: 31 KQVQLSENEIKLLCASSREIFVQQPNLLELEAPIKIC 67

BLAST of Cp4.1LG17g09200 vs. NCBI nr
Match: XP_022956565.1 (serine/threonine-protein phosphatase PP1 isozyme 4-like [Cucurbita moschata] >XP_022956566.1 serine/threonine-protein phosphatase PP1 isozyme 4-like [Cucurbita moschata] >XP_022976799.1 serine/threonine-protein phosphatase PP1 isozyme 4-like [Cucurbita maxima] >XP_022976810.1 serine/threonine-protein phosphatase PP1 isozyme 4-like [Cucurbita maxima] >XP_023547178.1 serine/threonine-protein phosphatase PP1 isozyme 4-like [Cucurbita pepo subsp. pepo] >XP_023547185.1 serine/threonine-protein phosphatase PP1 isozyme 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 68.2 bits (165), Expect = 3.07e-11
Identity = 34/37 (91.89%), Postives = 34/37 (91.89%), Query Frame = 0

Query: 43 KQVQLSENEIKLFCVSFREIFVQQPNLLELEAPIKIC 79
          KQVQLSENEIKL C S REIFVQQPNLLELEAPIKIC
Sbjct: 31 KQVQLSENEIKLLCASSREIFVQQPNLLELEAPIKIC 67

BLAST of Cp4.1LG17g09200 vs. NCBI nr
Match: XP_008461712.1 (PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Cucumis melo] >XP_016902748.1 PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Cucumis melo])

HSP 1 Score: 68.2 bits (165), Expect = 3.07e-11
Identity = 34/37 (91.89%), Postives = 34/37 (91.89%), Query Frame = 0

Query: 43 KQVQLSENEIKLFCVSFREIFVQQPNLLELEAPIKIC 79
          KQVQLSENEIKL C S REIFVQQPNLLELEAPIKIC
Sbjct: 31 KQVQLSENEIKLLCASSREIFVQQPNLLELEAPIKIC 67

BLAST of Cp4.1LG17g09200 vs. NCBI nr
Match: XP_004150636.1 (serine/threonine-protein phosphatase PP1 isozyme 4 [Cucumis sativus] >KGN50582.1 hypothetical protein Csa_021459 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 3.07e-11
Identity = 34/37 (91.89%), Postives = 34/37 (91.89%), Query Frame = 0

Query: 43 KQVQLSENEIKLFCVSFREIFVQQPNLLELEAPIKIC 79
          KQVQLSENEIKL C S REIFVQQPNLLELEAPIKIC
Sbjct: 31 KQVQLSENEIKLLCASSREIFVQQPNLLELEAPIKIC 67

BLAST of Cp4.1LG17g09200 vs. ExPASy TrEMBL
Match: A0A6J1K185 (Serine/threonine-protein phosphatase OS=Cucurbita maxima OX=3661 GN=LOC111491490 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.49e-11
Identity = 34/37 (91.89%), Postives = 34/37 (91.89%), Query Frame = 0

Query: 43 KQVQLSENEIKLFCVSFREIFVQQPNLLELEAPIKIC 79
          KQVQLSENEIKL C S REIFVQQPNLLELEAPIKIC
Sbjct: 31 KQVQLSENEIKLLCASSREIFVQQPNLLELEAPIKIC 67

BLAST of Cp4.1LG17g09200 vs. ExPASy TrEMBL
Match: A0A6J1IPN9 (Serine/threonine-protein phosphatase OS=Cucurbita maxima OX=3661 GN=LOC111477070 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.49e-11
Identity = 34/37 (91.89%), Postives = 34/37 (91.89%), Query Frame = 0

Query: 43 KQVQLSENEIKLFCVSFREIFVQQPNLLELEAPIKIC 79
          KQVQLSENEIKL C S REIFVQQPNLLELEAPIKIC
Sbjct: 31 KQVQLSENEIKLLCASSREIFVQQPNLLELEAPIKIC 67

BLAST of Cp4.1LG17g09200 vs. ExPASy TrEMBL
Match: A0A1S4E3E8 (Serine/threonine-protein phosphatase OS=Cucumis melo OX=3656 GN=LOC103500246 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.49e-11
Identity = 34/37 (91.89%), Postives = 34/37 (91.89%), Query Frame = 0

Query: 43 KQVQLSENEIKLFCVSFREIFVQQPNLLELEAPIKIC 79
          KQVQLSENEIKL C S REIFVQQPNLLELEAPIKIC
Sbjct: 31 KQVQLSENEIKLLCASSREIFVQQPNLLELEAPIKIC 67

BLAST of Cp4.1LG17g09200 vs. ExPASy TrEMBL
Match: A0A6J1GY47 (Serine/threonine-protein phosphatase OS=Cucurbita moschata OX=3662 GN=LOC111458264 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.49e-11
Identity = 34/37 (91.89%), Postives = 34/37 (91.89%), Query Frame = 0

Query: 43 KQVQLSENEIKLFCVSFREIFVQQPNLLELEAPIKIC 79
          KQVQLSENEIKL C S REIFVQQPNLLELEAPIKIC
Sbjct: 31 KQVQLSENEIKLLCASSREIFVQQPNLLELEAPIKIC 67

BLAST of Cp4.1LG17g09200 vs. ExPASy TrEMBL
Match: A0A0A0KQB9 (Serine/threonine-protein phosphatase OS=Cucumis sativus OX=3659 GN=Csa_5G184820 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.49e-11
Identity = 34/37 (91.89%), Postives = 34/37 (91.89%), Query Frame = 0

Query: 43 KQVQLSENEIKLFCVSFREIFVQQPNLLELEAPIKIC 79
          KQVQLSENEIKL C S REIFVQQPNLLELEAPIKIC
Sbjct: 31 KQVQLSENEIKLLCASSREIFVQQPNLLELEAPIKIC 67

BLAST of Cp4.1LG17g09200 vs. TAIR 10
Match: AT2G39840.1 (type one serine/threonine protein phosphatase 4 )

HSP 1 Score: 60.8 bits (146), Expect = 5.5e-10
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 0

Query: 43 KQVQLSENEIKLFCVSFREIFVQQPNLLELEAPIKIC 80
          KQVQLSE EIK  C + R+IF+QQPNLLELEAPIKIC
Sbjct: 36 KQVQLSEAEIKQLCTTARDIFLQQPNLLELEAPIKIC 72

BLAST of Cp4.1LG17g09200 vs. TAIR 10
Match: AT5G59160.1 (type one serine/threonine protein phosphatase 2 )

HSP 1 Score: 57.8 bits (138), Expect = 4.7e-09
Identity = 26/38 (68.42%), Postives = 32/38 (84.21%), Query Frame = 0

Query: 42 SKQVQLSENEIKLFCVSFREIFVQQPNLLELEAPIKIC 80
          +KQ  L+E+EI+  C+  REIF+QQPNLLELEAPIKIC
Sbjct: 31 TKQAMLNESEIRQLCIVSREIFLQQPNLLELEAPIKIC 68

BLAST of Cp4.1LG17g09200 vs. TAIR 10
Match: AT5G59160.2 (type one serine/threonine protein phosphatase 2 )

HSP 1 Score: 57.8 bits (138), Expect = 4.7e-09
Identity = 26/38 (68.42%), Postives = 32/38 (84.21%), Query Frame = 0

Query: 42 SKQVQLSENEIKLFCVSFREIFVQQPNLLELEAPIKIC 80
          +KQ  L+E+EI+  C+  REIF+QQPNLLELEAPIKIC
Sbjct: 31 TKQAMLNESEIRQLCIVSREIFLQQPNLLELEAPIKIC 68

BLAST of Cp4.1LG17g09200 vs. TAIR 10
Match: AT5G59160.3 (type one serine/threonine protein phosphatase 2 )

HSP 1 Score: 57.8 bits (138), Expect = 4.7e-09
Identity = 26/38 (68.42%), Postives = 32/38 (84.21%), Query Frame = 0

Query: 42 SKQVQLSENEIKLFCVSFREIFVQQPNLLELEAPIKIC 80
          +KQ  L+E+EI+  C+  REIF+QQPNLLELEAPIKIC
Sbjct: 31 TKQAMLNESEIRQLCIVSREIFLQQPNLLELEAPIKIC 68

BLAST of Cp4.1LG17g09200 vs. TAIR 10
Match: AT2G29400.1 (type one protein phosphatase 1 )

HSP 1 Score: 57.4 bits (137), Expect = 6.1e-09
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 0

Query: 43 KQVQLSENEIKLFCVSFREIFVQQPNLLELEAPIKIC 80
          KQV LSE EI+  C   +EIF+QQPNLLELEAPIKIC
Sbjct: 39 KQVHLSEGEIRQLCAVSKEIFLQQPNLLELEAPIKIC 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P484847.8e-0978.38Serine/threonine-protein phosphatase PP1 isozyme 4 OS=Arabidopsis thaliana OX=37... [more]
P221981.3e-0865.91Serine/threonine-protein phosphatase PP1 OS=Zea mays OX=4577 GN=PP1 PE=2 SV=1[more]
P484891.3e-0868.18Serine/threonine-protein phosphatase PP1 OS=Oryza sativa subsp. japonica OX=3994... [more]
P484806.6e-0870.27Serine/threonine-protein phosphatase PP1 isozyme 1 OS=Acetabularia peniculus OX=... [more]
P484826.6e-0868.42Serine/threonine-protein phosphatase PP1 isozyme 2 OS=Arabidopsis thaliana OX=37... [more]
Match NameE-valueIdentityDescription
KAG6578428.12.88e-1186.49Serine/threonine-protein phosphatase PP1 isozyme 2, partial [Cucurbita argyrospe... [more]
KAG6600976.12.99e-1191.89Serine/threonine-protein phosphatase PP1 isozyme 4, partial [Cucurbita argyrospe... [more]
XP_022956565.13.07e-1191.89serine/threonine-protein phosphatase PP1 isozyme 4-like [Cucurbita moschata] >XP... [more]
XP_008461712.13.07e-1191.89PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Cucumis melo] >XP... [more]
XP_004150636.13.07e-1191.89serine/threonine-protein phosphatase PP1 isozyme 4 [Cucumis sativus] >KGN50582.1... [more]
Match NameE-valueIdentityDescription
A0A6J1K1851.49e-1191.89Serine/threonine-protein phosphatase OS=Cucurbita maxima OX=3661 GN=LOC111491490... [more]
A0A6J1IPN91.49e-1191.89Serine/threonine-protein phosphatase OS=Cucurbita maxima OX=3661 GN=LOC111477070... [more]
A0A1S4E3E81.49e-1191.89Serine/threonine-protein phosphatase OS=Cucumis melo OX=3656 GN=LOC103500246 PE=... [more]
A0A6J1GY471.49e-1191.89Serine/threonine-protein phosphatase OS=Cucurbita moschata OX=3662 GN=LOC1114582... [more]
A0A0A0KQB91.49e-1191.89Serine/threonine-protein phosphatase OS=Cucumis sativus OX=3659 GN=Csa_5G184820 ... [more]
Match NameE-valueIdentityDescription
AT2G39840.15.5e-1078.38type one serine/threonine protein phosphatase 4 [more]
AT5G59160.14.7e-0968.42type one serine/threonine protein phosphatase 2 [more]
AT5G59160.24.7e-0968.42type one serine/threonine protein phosphatase 2 [more]
AT5G59160.34.7e-0968.42type one serine/threonine protein phosphatase 2 [more]
AT2G29400.16.1e-0972.97type one protein phosphatase 1 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031675Serine-threonine protein phosphatase, N-terminalPFAMPF16891STPPase_Ncoord: 41..73
e-value: 9.9E-12
score: 45.1

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG17g09200.1Cp4.1LG17g09200.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006470 protein dephosphorylation
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
molecular_function GO:0004722 protein serine/threonine phosphatase activity