Cp4.1LG17g04720 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG17g04720
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionRNA-binding (RRM/RBD/RNP motifs) family protein
LocationCp4.1LG17: 3553822 .. 3557066 (+)
RNA-Seq ExpressionCp4.1LG17g04720
SyntenyCp4.1LG17g04720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATAGGAGGAAGAAAGTAACGAATCTTTTCAGCGCGATTTTCTTAAGCCCTTACCCTGTTAGGGTTTTACACTGGCCGAGTAAAAAACCGAAAGAAATCAGCTTTTTATCTTAATTTACGATTGCATTTTTCACAAATTAGCGAAGAAATTCACGGTTTCAATGGCGGAAGAAAAGAATTTCAATGCCGACCATAACGCTTACCATGGCGGCGACGGTGCCGTCCAAATGTACGATCAGCAGGATCGGTTTGAATTGGGGAGTGAATTGGAAGGAGGCAATGCAGATAGTACAGGAGGTGAAGTAAAGCATTCGACGAGCCATTATGATTCTTCGTCCAGTGGGTTAGTTTTTATGATTTTTTTTTTTTCTTTTTTCGTCGTTGGTTTGAATCTTTGTGATACCGACGTTGTGCATTGAAGAAGAACAGAGCGGGTATCGCTTCTGTAAATATGTTTATTATTTGTGGAGATTGTTCTTTGAAATCTAACTCAGTTGGAGCATAACGTTTGACCTTTTTTATTTGCTAGCAAGCTTTTCGTTGGAGGCGTTTCTTGGGAGACCACTGAAGGTAAATTTAGTAAGCTTTTGATTACTGTGTTGTGGCTGTACCCTACAAAGAGGATTCTTTTTGCTTTTTTGTTCGGTTCTTTATTAGTTTTGTTTTTGAATTGACGTCTTGTGATGGTAGATGGATTATGTTATATATTATCATTCTTGAACCCTGCAAAGCTGGTTTAGTCTCCTCCAATGTCTATTTAGGCATCAATCAACATGTTATCTCTTCTGAGTTTATTGATCATTGTACAAGTCTTTGCAGAATATAATTGGGTTATGATTCTCGTTATTGTTCTTGCTTTTATTAATGTACACCAGTTTCCTGTTTTTAGTTACCACCATATTGCTCTTGTTCTTTCTTTTTTAATTCCACATTGTGCTACTTGCCTCTAAAATCTTGTATGCATGGTGAAATCAAGGTTTCATTCGAAAATTCATACCAATTTTTGTTTCCTCAGATGTGTTTAAATCATTTGATTTATGCTTTTAATAACGCTGTACATTTGGCCTTTTGTTCATAGTTCAATTGGCAAAAGACTCTTTAACGTTAAAGAACCCTCGTTAGGAGGAAAAGAAAATTTGATCTTTTGTTCTCTGCTAATATGTTATTGTTTCGACGTTTTTTCCCAATTCATACTGTCATCGTCCTGTCGTACATTCTTGACAATTTTTTATTATTATTATTTGGTATTCAGAGACCTTTAGTGATTACTTCAGCAAGTATGGAGAAATAGCTGATTCAGTTATAATGATGGACAAACACACTGGAAGGCCACGCGGGTTTGGTTTTGTAACGTTTTGTGATCCTTCAGTTGCTGACATGGTTCTGAATAAAGACCATGTTATAGATGGCAGAACGGTAACATAAATTTCAGTTATTTTTCTAATTCAAACTTCGTAATCTGGATGATGGATAATAGACTATTTTTATGTTACCATCAGGTGGAAGTGAAGAGAACAGTTCCGAGGGCTGATACGAACGATAAATTGGTATCAAGGACAAAGAAAATTTTTGTTGGTGGAATTCCACCTGCTTTGACTGAAGGTATTATGGTAGAAGTCAATATCTATTGTTTCTTTTCATGAGAATTAATATTAAATGAAAGATGCTCTGTTTGGATGTCCCATAAACATTGCAGATGCGTTTAAGGTCTACTTCTCTTCGTTTGGTACTATTACCGAACACCAAATCATGATAGACTATAGAACGAAGCGGTCTAGAGGATTTGGATTTATAACTTTTGAGAACGAAGATGCAGTTGAAAGTATATTCGCTGGAAACGAAAAACATGAGCTTGGAGGCAAGCAGGTAAATGAGAAATGGATTGAAGCATGAAAATCTGTTCTTGAGTGCTTTTTGTCTGTATGAAAAATCTTTTAAGAGATTTGTTATGTAACAGGTGGAAATCAAGAAGGCTATACCAAGAAGAGTTTCTTATGATTCACATAGTAACAATACTGCAGCACCACCTTCTTCAGGATATGGCATGTATAAATGTGAAGGCTTATATGATGATAAAATGGGCAGACCTTTTGGACGGTATGATGTATATGCACCCTTTGGCGGGTACGGTGGGAACTATGCCAATTTCTACGGTGCATACAATTACGGTTTTGGTTATGGTGGCCCGATGTATATAAACGGTATCGGTAGATATGGGATGACTGGTTACGGTGTCCCCACTTGCTATGGTTGTACAATGGCTGAAAGATACCATCCATATTGGTATTGAGCAATCTTTTCCTAGATGGTTTCTACTATGAAGAAAGTGATGATTGATTTTGACCAGGAGCACAAATATCCATCCATCTTAGTAGCTGTGCAGTTCGAGATTTTTTCGGTGTAATATAATCGACGATGATCTTCTCTATTTTTTTTTTTTTTTTTTCCTTTTTGGAGACGTGACGATGGAATGATGGACATACTTCCTCTAGGATATCATATGTTTTTGAATCTTCACAACCGTAGTTGTGATATTCTCAAATAAGGAAAACATATGATGTAGAGATAATATTAGTTTACTATCTAATTTTTCTTAACCTCTGGGGTCAACCCACCTGAACTCACTAAGACCGACGATGGTTCGGTTTTGGTTCGAGTAAGGTTGGTTTTCAGGTTGACATATAGGCTTGCCGACCTCTCGACCTCCTGAGGTGATTGACATAGGTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNGTTTGCTTTTGGTTCAATTGATTTGAGCTTCGTTGAAGCTCCAAGCATTGAGGTTTTGTGATGGTTACAATCTCTCTTCCATTGTTGAAAATATAAAGACGAACCCTTTGCTTTTGAAGCTCTCGACAAGTTTCATAACTTTTAATAAGTGTGTAATAACGTCACATTATTCTAACCTCTCGAATAAGTTTTTCGTAGCTTCTTTGGTTACTACATATAAACATGACATATTTATTGGTTTGGCACTTTAGCTTTTGCGTCTGTTACTATGATTGTCGATCCTGTCTTTAACAACATAATTTTATCTTTTCGAAGTTAGACTACGATTGTTGTTTCCGTCTTTAACAACATAATTTTATTCTTTTGAAGTTTTTAAATTTTTTCAATTAGATGCTTTAAATTTTCTGAATGGGTGATTGCATTAGTTGCAAATTGTCGTTGGAATTGCCTTGTGAATG

mRNA sequence

TATAGGAGGAAGAAAGTAACGAATCTTTTCAGCGCGATTTTCTTAAGCCCTTACCCTGTTAGGGTTTTACACTGGCCGAGTAAAAAACCGAAAGAAATCAGCTTTTTATCTTAATTTACGATTGCATTTTTCACAAATTAGCGAAGAAATTCACGGTTTCAATGGCGGAAGAAAAGAATTTCAATGCCGACCATAACGCTTACCATGGCGGCGACGGTGCCGTCCAAATGTACGATCAGCAGGATCGGTTTGAATTGGGGAGTGAATTGGAAGGAGGCAATGCAGATAGTACAGGAGGTGAAGTAAAGCATTCGACGAGCCATTATGATTCTTCGTCCAGTGGCAAGCTTTTCGTTGGAGGCGTTTCTTGGGAGACCACTGAAGAGACCTTTAGTGATTACTTCAGCAAGTATGGAGAAATAGCTGATTCAGTTATAATGATGGACAAACACACTGGAAGGCCACGCGGGTTTGGTTTTGTAACGTTTTGTGATCCTTCAGTTGCTGACATGGTTCTGAATAAAGACCATGTTATAGATGGCAGAACGGTGGAAGTGAAGAGAACAGTTCCGAGGGCTGATACGAACGATAAATTGGTATCAAGGACAAAGAAAATTTTTGTTGGTGGAATTCCACCTGCTTTGACTGAAGATGCGTTTAAGGTCTACTTCTCTTCGTTTGGTACTATTACCGAACACCAAATCATGATAGACTATAGAACGAAGCGGTCTAGAGGATTTGGATTTATAACTTTTGAGAACGAAGATGCAGTTGAAAGTATATTCGCTGGAAACGAAAAACATGAGCTTGGAGGCAAGCAGGTGGAAATCAAGAAGGCTATACCAAGAAGAGTTTCTTATGATTCACATAGTAACAATACTGCAGCACCACCTTCTTCAGGATATGGCATGTATAAATGTGAAGGCTTATATGATGATAAAATGGGCAGACCTTTTGGACGGTATGATGTATATGCACCCTTTGGCGGGTACGGTGGGAACTATGCCAATTTCTACGGTGCATACAATTACGGTTTTGGTTATGGTGGCCCGATGTATATAAACGGTATCGGTAGATATGGGATGACTGGTTACGGTGTCCCCACTTGCTATGGTTGTACAATGGCTGAAAGATACCATCCATATTGGTATTGAGCAATCTTTTCCTAGATGGTTTCTACTATGAAGAAAGTGATGATTGATTTTGACCAGGAGCACAAATATCCATCCATCTTAGTAGCTGTGCAGTTCGAGATTTTTTCGGTGTAATATAATCGACGATGATCTTCTCTATTTTTTTTTTTTTTTTTTCCTTTTTGGAGACGTGACGATGGAATGATGGACATACTTCCTCTAGGATATCATATGTTTTTGAATCTTCACAACCGTAGTTGTGATATTCTCAAATAAGGAAAACATATGATGTAGAGATAATATTAGTTTACTATCTAATTTTTCTTAACCTCTGGGGTCAACCCACCTGAACTCACTAAGACCGACGATGGTTCGGTTTTGGTTCGAGTAAGGTTGGTTTTCAGGTTGACATATAGGCTTGCCGACCTCTCGACCTCCTGAGGTGATTGACATAGGTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNGTTTGCTTTTGGTTCAATTGATTTGAGCTTCGTTGAAGCTCCAAGCATTGAGGTTTTGTGATGGTTACAATCTCTCTTCCATTGTTGAAAATATAAAGACGAACCCTTTGCTTTTGAAGCTCTCGACAAGTTTCATAACTTTTAATAAGTGTGTAATAACGTCACATTATTCTAACCTCTCGAATAAGTTTTTCGTAGCTTCTTTGGTTACTACATATAAACATGACATATTTATTGGTTTGGCACTTTAGCTTTTGCGTCTGTTACTATGATTGTCGATCCTGTCTTTAACAACATAATTTTATCTTTTCGAAGTTAGACTACGATTGTTGTTTCCGTCTTTAACAACATAATTTTATTCTTTTGAAGTTTTTAAATTTTTTCAATTAGATGCTTTAAATTTTCTGAATGGGTGATTGCATTAGTTGCAAATTGTCGTTGGAATTGCCTTGTGAATG

Coding sequence (CDS)

ATGGCGGAAGAAAAGAATTTCAATGCCGACCATAACGCTTACCATGGCGGCGACGGTGCCGTCCAAATGTACGATCAGCAGGATCGGTTTGAATTGGGGAGTGAATTGGAAGGAGGCAATGCAGATAGTACAGGAGGTGAAGTAAAGCATTCGACGAGCCATTATGATTCTTCGTCCAGTGGCAAGCTTTTCGTTGGAGGCGTTTCTTGGGAGACCACTGAAGAGACCTTTAGTGATTACTTCAGCAAGTATGGAGAAATAGCTGATTCAGTTATAATGATGGACAAACACACTGGAAGGCCACGCGGGTTTGGTTTTGTAACGTTTTGTGATCCTTCAGTTGCTGACATGGTTCTGAATAAAGACCATGTTATAGATGGCAGAACGGTGGAAGTGAAGAGAACAGTTCCGAGGGCTGATACGAACGATAAATTGGTATCAAGGACAAAGAAAATTTTTGTTGGTGGAATTCCACCTGCTTTGACTGAAGATGCGTTTAAGGTCTACTTCTCTTCGTTTGGTACTATTACCGAACACCAAATCATGATAGACTATAGAACGAAGCGGTCTAGAGGATTTGGATTTATAACTTTTGAGAACGAAGATGCAGTTGAAAGTATATTCGCTGGAAACGAAAAACATGAGCTTGGAGGCAAGCAGGTGGAAATCAAGAAGGCTATACCAAGAAGAGTTTCTTATGATTCACATAGTAACAATACTGCAGCACCACCTTCTTCAGGATATGGCATGTATAAATGTGAAGGCTTATATGATGATAAAATGGGCAGACCTTTTGGACGGTATGATGTATATGCACCCTTTGGCGGGTACGGTGGGAACTATGCCAATTTCTACGGTGCATACAATTACGGTTTTGGTTATGGTGGCCCGATGTATATAAACGGTATCGGTAGATATGGGATGACTGGTTACGGTGTCCCCACTTGCTATGGTTGTACAATGGCTGAAAGATACCATCCATATTGGTATTGA

Protein sequence

MAEEKNFNADHNAYHGGDGAVQMYDQQDRFELGSELEGGNADSTGGEVKHSTSHYDSSSSGKLFVGGVSWETTEETFSDYFSKYGEIADSVIMMDKHTGRPRGFGFVTFCDPSVADMVLNKDHVIDGRTVEVKRTVPRADTNDKLVSRTKKIFVGGIPPALTEDAFKVYFSSFGTITEHQIMIDYRTKRSRGFGFITFENEDAVESIFAGNEKHELGGKQVEIKKAIPRRVSYDSHSNNTAAPPSSGYGMYKCEGLYDDKMGRPFGRYDVYAPFGGYGGNYANFYGAYNYGFGYGGPMYINGIGRYGMTGYGVPTCYGCTMAERYHPYWY
Homology
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BLAST of Cp4.1LG17g04720 vs. ExPASy Swiss-Prot
Match: Q8W034 (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP1 PE=1 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.1e-48
Identity = 118/288 (40.97%), Postives = 158/288 (54.86%), Query Frame = 0 

Query: 58  SSSGKLFVGGVSWETTEETFSDYFSKYGEIADSVIMMDKHTGRPRGFGFVTFCDPSVADM 117
           S  GKLFVGG+SWET E+   ++F+ YGE++ +++M DK TGRPRGFGFV F DPSV D 
Sbjct: 3   SDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDR 62

Query: 118 VLNKDHVIDGRTVEVKRTVPRAD---------------TNDKLVSRTKKIFVGGIPPALT 177
           VL + H ID R V+VKR + R +               +     ++TKKIFVGG+PP LT
Sbjct: 63  VLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLT 122

Query: 178 EDAFKVYFSSFGTITEHQIMIDYRTKRSRGFGFITFENEDAVESIFAGNEKHELGGKQVE 237
           ++ F+ YF  +G +T+  IM D  T R RGFGF++F++EDAV+S+      H+L GKQVE
Sbjct: 123 DEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVL-HKTFHDLSGKQVE 182

Query: 238 IKKAIPRRVSYDSHSNNTAAPPSSGY-GMYKCEGLYDDKMGRPFGRYDVYAPFG------ 297
           +K+A+P+  +      +     S GY G    E  YD +M     R+  +   G      
Sbjct: 183 VKRALPKDANPGGGGRSMGGGGSGGYQGYGGNESSYDGRMDS--NRFLQHQSVGNGLPSY 242

Query: 298 ---GYGGNYANFYGAYNYGFGYGGPMYINGIGRYGMTGYGVPTCYGCT 321
              GYG  Y N      YG  YGG  Y    G YG    G    YG T
Sbjct: 243 GSSGYGAGYGNGSNGAGYG-AYGG--YTGSAGGYGA---GATAGYGAT 281

[Close]
BLAST of Cp4.1LG17g04720 vs. ExPASy Swiss-Prot
Match: Q9VVE5 (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster OX=7227 GN=Rbp6 PE=2 SV=3)

HSP 1 Score: 172.2 bits (435), Expect = 1.0e-41
Identity = 97/225 (43.11%), Postives = 133/225 (59.11%), Query Frame = 0 

Query: 61  GKLFVGGVSWETTEETFSDYFSKYGEIADSVIMMDKHTGRPRGFGFVTFCDPSVADMVLN 120
           GK+F+GG+SW+T+ E+  DYF +YG+I+++++M D  T R RGFGFVTF DP+  D VL 
Sbjct: 29  GKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLT 88

Query: 121 K-DHVIDGRTVEVKRTVPRADTNDKLVSRTKKIFVGGIPPALTEDAFKVYFSSFGTITEH 180
           +  H +DG+ V+ K   PR   + K+V+RTKKIFVGG+    T +  K YF  FG I + 
Sbjct: 89  QGTHELDGKKVDPKVAFPRR-AHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDA 148

Query: 181 QIMIDYRTKRSRGFGFITFENEDAVESIFAGNEKHELGGKQVEIKKAIPRRVSYDSHSNN 240
            +M D +T R RGFGF+TF++ED V+ +      HE+  K VE KKA P+ V   ++   
Sbjct: 149 MLMFDKQTNRHRGFGFVTFQSEDVVDKV-CEIHFHEINNKMVECKKAQPKEVMLPANLAK 208

Query: 241 TAAPPSSGYGMYKCEGLYDDKMGRPFGRYDVYAPFGGYGGNYANF 285
           T A   S Y      GL     G P   Y  YA   GY G Y +F
Sbjct: 209 TRAAGRSAYDNIMW-GLGTLPEGFPAAAYAAYAAGRGYSG-YPSF 249

[Close]
BLAST of Cp4.1LG17g04720 vs. ExPASy Swiss-Prot
Match: O94432 (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC660.15 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 8.5e-41
Identity = 82/206 (39.81%), Postives = 129/206 (62.62%), Query Frame = 0 

Query: 34  SELEGGNADSTGGEVKHSTSHYDSSSSGKLFVGGVSWETTEETFSDYFSKYGEIADSVIM 93
           S L G  A  +  +    TS + +   GK+F+GG++WETT+++  DYF ++GE+ D  +M
Sbjct: 137 SALTGSGAMESNEDNAEETSPF-NREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVM 196

Query: 94  MDKHTGRPRGFGFVTFCDPSVADMVLNKDHVIDGRTVEVKRTVPRADTNDKLVSRTKKIF 153
            D  TGR RGFGF+TF +P   + V++K+H +DG+ ++ KR +PR +       +T K+F
Sbjct: 197 RDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPKRAIPREEQ-----EKTAKMF 256

Query: 154 VGGIPPALTEDAFKVYFSSFGTITEHQIMIDYRTKRSRGFGFITFENEDAVESIFAGNEK 213
           VGG+P   TE+ F+ +F+ FG + +  +M+D  T R RGFGF+T+ENE AVE+  +    
Sbjct: 257 VGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMS-QPY 316

Query: 214 HELGGKQVEIKKAIPRRVSYDSHSNN 240
             + GK VE+K+A P+    DSH  +
Sbjct: 317 ITIHGKPVEVKRATPKASLRDSHDRH 335

[Close]
BLAST of Cp4.1LG17g04720 vs. ExPASy Swiss-Prot
Match: Q96DH6 (RNA-binding protein Musashi homolog 2 OS=Homo sapiens OX=9606 GN=MSI2 PE=1 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 9.3e-40
Identity = 83/193 (43.01%), Postives = 118/193 (61.14%), Query Frame = 0 

Query: 42  DSTGGEVKHSTSHYDSSSSGKLFVGGVSWETTEETFSDYFSKYGEIADSVIMMDKHTGRP 101
           ++ G +    +++      GK+F+GG+SW+T+ ++  DYFSK+GEI + ++M D  T R 
Sbjct: 2   EANGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRS 61

Query: 102 RGFGFVTFCDPSVADMVLNK-DHVIDGRTVEVKRTVPRADTNDKLVSRTKKIFVGGIPPA 161
           RGFGFVTF DP+  D VL +  H +D +T++ K   PR     K+V+RTKKIFVGG+   
Sbjct: 62  RGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRR-AQPKMVTRTKKIFVGGLSAN 121

Query: 162 LTEDAFKVYFSSFGTITEHQIMIDYRTKRSRGFGFITFENEDAVESIFAGNEKHELGGKQ 221
              +  K YF  FG + +  +M D  T R RGFGF+TFENED VE +      HE+  K 
Sbjct: 122 TVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKV-CEIHFHEINNKM 181

Query: 222 VEIKKAIPRRVSY 234
           VE KKA P+ V +
Sbjct: 182 VECKKAQPKEVMF 192

[Close]
BLAST of Cp4.1LG17g04720 vs. ExPASy Swiss-Prot
Match: Q920Q6 (RNA-binding protein Musashi homolog 2 OS=Mus musculus OX=10090 GN=Msi2 PE=1 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.2e-39
Identity = 86/199 (43.22%), Postives = 117/199 (58.79%), Query Frame = 0 

Query: 36  LEGGNADSTGGEVKHSTSHYDSSSSGKLFVGGVSWETTEETFSDYFSKYGEIADSVIMMD 95
           +E   +  T G    S         GK+F+GG+SW+T+ ++  DYFSK+GEI + ++M D
Sbjct: 1   MEANGSPGTSGSANDS-----QHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRD 60

Query: 96  KHTGRPRGFGFVTFCDPSVADMVLNK-DHVIDGRTVEVKRTVPRADTNDKLVSRTKKIFV 155
             T R RGFGFVTF DP+  D VL +  H +D +T++ K   PR     K+V+RTKKIFV
Sbjct: 61  PTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRR-AQPKMVTRTKKIFV 120

Query: 156 GGIPPALTEDAFKVYFSSFGTITEHQIMIDYRTKRSRGFGFITFENEDAVESIFAGNEKH 215
           GG+      +  K YF  FG + +  +M D  T R RGFGF+TFENED VE +      H
Sbjct: 121 GGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKV-CEIHFH 180

Query: 216 ELGGKQVEIKKAIPRRVSY 234
           E+  K VE KKA P+ V +
Sbjct: 181 EINNKMVECKKAQPKEVMF 192

[Close]
BLAST of Cp4.1LG17g04720 vs. NCBI nr
Match: XP_023514818.1 (heterogeneous nuclear ribonucleoprotein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 684 bits (1764), Expect = 1.85e-248
Identity = 330/330 (100.00%), Postives = 330/330 (100.00%), Query Frame = 0 

Query: 1   MAEEKNFNADHNAYHGGDGAVQMYDQQDRFELGSELEGGNADSTGGEVKHSTSHYDSSSS 60
           MAEEKNFNADHNAYHGGDGAVQMYDQQDRFELGSELEGGNADSTGGEVKHSTSHYDSSSS
Sbjct: 1   MAEEKNFNADHNAYHGGDGAVQMYDQQDRFELGSELEGGNADSTGGEVKHSTSHYDSSSS 60

Query: 61  GKLFVGGVSWETTEETFSDYFSKYGEIADSVIMMDKHTGRPRGFGFVTFCDPSVADMVLN 120
           GKLFVGGVSWETTEETFSDYFSKYGEIADSVIMMDKHTGRPRGFGFVTFCDPSVADMVLN
Sbjct: 61  GKLFVGGVSWETTEETFSDYFSKYGEIADSVIMMDKHTGRPRGFGFVTFCDPSVADMVLN 120

Query: 121 KDHVIDGRTVEVKRTVPRADTNDKLVSRTKKIFVGGIPPALTEDAFKVYFSSFGTITEHQ 180
           KDHVIDGRTVEVKRTVPRADTNDKLVSRTKKIFVGGIPPALTEDAFKVYFSSFGTITEHQ
Sbjct: 121 KDHVIDGRTVEVKRTVPRADTNDKLVSRTKKIFVGGIPPALTEDAFKVYFSSFGTITEHQ 180

Query: 181 IMIDYRTKRSRGFGFITFENEDAVESIFAGNEKHELGGKQVEIKKAIPRRVSYDSHSNNT 240
           IMIDYRTKRSRGFGFITFENEDAVESIFAGNEKHELGGKQVEIKKAIPRRVSYDSHSNNT
Sbjct: 181 IMIDYRTKRSRGFGFITFENEDAVESIFAGNEKHELGGKQVEIKKAIPRRVSYDSHSNNT 240

Query: 241 AAPPSSGYGMYKCEGLYDDKMGRPFGRYDVYAPFGGYGGNYANFYGAYNYGFGYGGPMYI 300
           AAPPSSGYGMYKCEGLYDDKMGRPFGRYDVYAPFGGYGGNYANFYGAYNYGFGYGGPMYI
Sbjct: 241 AAPPSSGYGMYKCEGLYDDKMGRPFGRYDVYAPFGGYGGNYANFYGAYNYGFGYGGPMYI 300

Query: 301 NGIGRYGMTGYGVPTCYGCTMAERYHPYWY 330
           NGIGRYGMTGYGVPTCYGCTMAERYHPYWY
Sbjct: 301 NGIGRYGMTGYGVPTCYGCTMAERYHPYWY 330

[Close]
BLAST of Cp4.1LG17g04720 vs. NCBI nr
Match: XP_022964368.1 (heterogeneous nuclear ribonucleoprotein 1 [Cucurbita moschata])

HSP 1 Score: 682 bits (1759), Expect = 1.07e-247
Identity = 329/330 (99.70%), Postives = 329/330 (99.70%), Query Frame = 0 

Query: 1   MAEEKNFNADHNAYHGGDGAVQMYDQQDRFELGSELEGGNADSTGGEVKHSTSHYDSSSS 60
           MAEEKNFNADHNAYHGGDGAVQMYDQQDRFELGSELEGGNADSTGGEVKHSTSHYDSSSS
Sbjct: 1   MAEEKNFNADHNAYHGGDGAVQMYDQQDRFELGSELEGGNADSTGGEVKHSTSHYDSSSS 60

Query: 61  GKLFVGGVSWETTEETFSDYFSKYGEIADSVIMMDKHTGRPRGFGFVTFCDPSVADMVLN 120
           GKLFVGGVSWETTEETFSDYFSKYGEIADSVIMMDKHTGRPRGFGFVTFCDPSVADMVLN
Sbjct: 61  GKLFVGGVSWETTEETFSDYFSKYGEIADSVIMMDKHTGRPRGFGFVTFCDPSVADMVLN 120

Query: 121 KDHVIDGRTVEVKRTVPRADTNDKLVSRTKKIFVGGIPPALTEDAFKVYFSSFGTITEHQ 180
           KDHVIDGRTVEVKRTVPRADTNDKLVSRTKKIFVGGIPPALTEDAFKVYFSSFGTITEHQ
Sbjct: 121 KDHVIDGRTVEVKRTVPRADTNDKLVSRTKKIFVGGIPPALTEDAFKVYFSSFGTITEHQ 180

Query: 181 IMIDYRTKRSRGFGFITFENEDAVESIFAGNEKHELGGKQVEIKKAIPRRVSYDSHSNNT 240
           IMIDYRTKRSRGFGFITFENEDAVESIFAGNEKHELGGKQVEIKKAIPRRVSYDSHSNNT
Sbjct: 181 IMIDYRTKRSRGFGFITFENEDAVESIFAGNEKHELGGKQVEIKKAIPRRVSYDSHSNNT 240

Query: 241 AAPPSSGYGMYKCEGLYDDKMGRPFGRYDVYAPFGGYGGNYANFYGAYNYGFGYGGPMYI 300
           AAPPSSGYGMYKCEGLYDDKMGRPFGRYDVYAPFGGYGGNYANFYGAYNYGFGYGGPMYI
Sbjct: 241 AAPPSSGYGMYKCEGLYDDKMGRPFGRYDVYAPFGGYGGNYANFYGAYNYGFGYGGPMYI 300

Query: 301 NGIGRYGMTGYGVPTCYGCTMAERYHPYWY 330
           NGIGRYGMTGYGVP CYGCTMAERYHPYWY
Sbjct: 301 NGIGRYGMTGYGVPNCYGCTMAERYHPYWY 330

[Close]
BLAST of Cp4.1LG17g04720 vs. NCBI nr
Match: KAG6593527.1 (Heterogeneous nuclear ribonucleoprotein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 677 bits (1746), Expect = 1.03e-245
Identity = 327/330 (99.09%), Postives = 328/330 (99.39%), Query Frame = 0 

Query: 1   MAEEKNFNADHNAYHGGDGAVQMYDQQDRFELGSELEGGNADSTGGEVKHSTSHYDSSSS 60
           MAEEKNFNADHNAYHGGDGAVQMYDQQDRFELGSELEGGNADSTGGEVKHSTSHYDSSSS
Sbjct: 1   MAEEKNFNADHNAYHGGDGAVQMYDQQDRFELGSELEGGNADSTGGEVKHSTSHYDSSSS 60

Query: 61  GKLFVGGVSWETTEETFSDYFSKYGEIADSVIMMDKHTGRPRGFGFVTFCDPSVADMVLN 120
           GKLFVGGVSWETTEETFSDYFSKYGEIADSVIMMDKHTGRPRGFGFVTFCDPSVADMVLN
Sbjct: 61  GKLFVGGVSWETTEETFSDYFSKYGEIADSVIMMDKHTGRPRGFGFVTFCDPSVADMVLN 120

Query: 121 KDHVIDGRTVEVKRTVPRADTNDKLVSRTKKIFVGGIPPALTEDAFKVYFSSFGTITEHQ 180
           KDHVIDGRTVEVKRTVPRADTN+KLVSRTKKIFVGGIPPALTEDAFKVYFSSFGTITEHQ
Sbjct: 121 KDHVIDGRTVEVKRTVPRADTNNKLVSRTKKIFVGGIPPALTEDAFKVYFSSFGTITEHQ 180

Query: 181 IMIDYRTKRSRGFGFITFENEDAVESIFAGNEKHELGGKQVEIKKAIPRRVSYDSHSNNT 240
           IMIDYRTKRSRGFGFITFENEDAVESIFAGNEKHELGGKQVEIKKAIPRRVSYDSHSNNT
Sbjct: 181 IMIDYRTKRSRGFGFITFENEDAVESIFAGNEKHELGGKQVEIKKAIPRRVSYDSHSNNT 240

Query: 241 AAPPSSGYGMYKCEGLYDDKMGRPFGRYDVYAPFGGYGGNYANFYGAYNYGFGYGGPMYI 300
           AAPPSSGYGMYKCEGLYDDKMGRPFGRYDVYAPFG YGGNYANFYGAYNYGFGYGGPMYI
Sbjct: 241 AAPPSSGYGMYKCEGLYDDKMGRPFGRYDVYAPFGRYGGNYANFYGAYNYGFGYGGPMYI 300

Query: 301 NGIGRYGMTGYGVPTCYGCTMAERYHPYWY 330
           NGIGRYGMTGYGVP CYGCTMAERYHPYWY
Sbjct: 301 NGIGRYGMTGYGVPNCYGCTMAERYHPYWY 330

[Close]
BLAST of Cp4.1LG17g04720 vs. NCBI nr
Match: KAG7025871.1 (Heterogeneous nuclear ribonucleoprotein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 669 bits (1725), Expect = 2.57e-242
Identity = 327/342 (95.61%), Postives = 328/342 (95.91%), Query Frame = 0 

Query: 1   MAEEKNFNADHNAYHGGDGAVQMYDQQDRFELGSELEGGNADSTGGEVKHSTSHYDSSSS 60
           MAEEKNFNADHNAYHGGDGAVQMYDQQDRFELGSELEGGNADSTGGEVKHSTSHYDSSSS
Sbjct: 1   MAEEKNFNADHNAYHGGDGAVQMYDQQDRFELGSELEGGNADSTGGEVKHSTSHYDSSSS 60

Query: 61  G------------KLFVGGVSWETTEETFSDYFSKYGEIADSVIMMDKHTGRPRGFGFVT 120
           G            KLFVGGVSWETTEETFSDYFSKYGEIADSVIMMDKHTGRPRGFGFVT
Sbjct: 61  GWSITFDLFLFASKLFVGGVSWETTEETFSDYFSKYGEIADSVIMMDKHTGRPRGFGFVT 120

Query: 121 FCDPSVADMVLNKDHVIDGRTVEVKRTVPRADTNDKLVSRTKKIFVGGIPPALTEDAFKV 180
           FCDPSVADMVLNKDHVIDGRTVEVKRTVPRADTN+KLVSRTKKIFVGGIPPALTEDAFKV
Sbjct: 121 FCDPSVADMVLNKDHVIDGRTVEVKRTVPRADTNNKLVSRTKKIFVGGIPPALTEDAFKV 180

Query: 181 YFSSFGTITEHQIMIDYRTKRSRGFGFITFENEDAVESIFAGNEKHELGGKQVEIKKAIP 240
           YFSSFGTITEHQIMIDYRTKRSRGFGFITFENEDAVESIFAGNEKHELGGKQVEIKKAIP
Sbjct: 181 YFSSFGTITEHQIMIDYRTKRSRGFGFITFENEDAVESIFAGNEKHELGGKQVEIKKAIP 240

Query: 241 RRVSYDSHSNNTAAPPSSGYGMYKCEGLYDDKMGRPFGRYDVYAPFGGYGGNYANFYGAY 300
           RRVSYDSHSNNTAAPPSSGYGMYKCEGLYDDKMGRPFGRYDVYAPFGGYGGNYANFYGAY
Sbjct: 241 RRVSYDSHSNNTAAPPSSGYGMYKCEGLYDDKMGRPFGRYDVYAPFGGYGGNYANFYGAY 300

Query: 301 NYGFGYGGPMYINGIGRYGMTGYGVPTCYGCTMAERYHPYWY 330
           NYGFGYGGPMYINGI RYGMTGYGVP CYGCTMAERYHPYWY
Sbjct: 301 NYGFGYGGPMYINGISRYGMTGYGVPNCYGCTMAERYHPYWY 342

[Close]
BLAST of Cp4.1LG17g04720 vs. NCBI nr
Match: XP_023000106.1 (heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita maxima])

HSP 1 Score: 638 bits (1646), Expect = 1.74e-230
Identity = 310/330 (93.94%), Postives = 320/330 (96.97%), Query Frame = 0 

Query: 1   MAEEKNFNADHNAYHGGDGAVQMYDQQDRFELGSELEGGNADSTGGEVKHSTSHYDSSSS 60
           MAEEKN NAD+NAYHG DGA+QMYDQQD+FELGSELEGGNADSTGGEVKHST HYDSSSS
Sbjct: 1   MAEEKNLNADNNAYHG-DGAIQMYDQQDKFELGSELEGGNADSTGGEVKHSTRHYDSSSS 60

Query: 61  GKLFVGGVSWETTEETFSDYFSKYGEIADSVIMMDKHTGRPRGFGFVTFCDPSVADMVLN 120
           GKLFVGGVSWETTEETF+ YFSKYGEIADSVIMMDKHTGRPRGFGFVTFCDPSVADMVL 
Sbjct: 61  GKLFVGGVSWETTEETFTYYFSKYGEIADSVIMMDKHTGRPRGFGFVTFCDPSVADMVLI 120

Query: 121 KDHVIDGRTVEVKRTVPRADTNDKLVSRTKKIFVGGIPPALTEDAFKVYFSSFGTITEHQ 180
           KDHVIDGRTVEVKRTVPRAD NDKLVSRTKKIFVGGIPPALTEDAFKVYFSSFGTITEHQ
Sbjct: 121 KDHVIDGRTVEVKRTVPRADMNDKLVSRTKKIFVGGIPPALTEDAFKVYFSSFGTITEHQ 180

Query: 181 IMIDYRTKRSRGFGFITFENEDAVESIFAGNEKHELGGKQVEIKKAIPRRVSYDSHSNNT 240
           IMIDY+TKRSRGFGFITFENED+VESIFAGNEKHELGGKQVEIKKAIPRRVSYDS+SNNT
Sbjct: 181 IMIDYKTKRSRGFGFITFENEDSVESIFAGNEKHELGGKQVEIKKAIPRRVSYDSNSNNT 240

Query: 241 AAPPSSGYGMYKCEGLYDDKMGRPFGRYDVYAPFGGYGGNYANFYGAYNYGFGYGGPMYI 300
           AAPPSSGYG+YKC GLYDDKMGRPF  YDVYAPFGGYGGNYANFYGAY+YGFGYGGPMY+
Sbjct: 241 AAPPSSGYGVYKCAGLYDDKMGRPFRGYDVYAPFGGYGGNYANFYGAYSYGFGYGGPMYM 300

Query: 301 NGIGRYGMTGYGVPTCYGCTMAERYHPYWY 330
           NGIGRYGMTGYGVP CYGCTMAERYHPYWY
Sbjct: 301 NGIGRYGMTGYGVPNCYGCTMAERYHPYWY 329

[Close]
BLAST of Cp4.1LG17g04720 vs. ExPASy TrEMBL
Match: A0A6J1HKL5 (heterogeneous nuclear ribonucleoprotein 1 OS=Cucurbita moschata OX=3662 GN=LOC111464402 PE=4 SV=1)

HSP 1 Score: 682 bits (1759), Expect = 5.19e-248
Identity = 329/330 (99.70%), Postives = 329/330 (99.70%), Query Frame = 0 

Query: 1   MAEEKNFNADHNAYHGGDGAVQMYDQQDRFELGSELEGGNADSTGGEVKHSTSHYDSSSS 60
           MAEEKNFNADHNAYHGGDGAVQMYDQQDRFELGSELEGGNADSTGGEVKHSTSHYDSSSS
Sbjct: 1   MAEEKNFNADHNAYHGGDGAVQMYDQQDRFELGSELEGGNADSTGGEVKHSTSHYDSSSS 60

Query: 61  GKLFVGGVSWETTEETFSDYFSKYGEIADSVIMMDKHTGRPRGFGFVTFCDPSVADMVLN 120
           GKLFVGGVSWETTEETFSDYFSKYGEIADSVIMMDKHTGRPRGFGFVTFCDPSVADMVLN
Sbjct: 61  GKLFVGGVSWETTEETFSDYFSKYGEIADSVIMMDKHTGRPRGFGFVTFCDPSVADMVLN 120

Query: 121 KDHVIDGRTVEVKRTVPRADTNDKLVSRTKKIFVGGIPPALTEDAFKVYFSSFGTITEHQ 180
           KDHVIDGRTVEVKRTVPRADTNDKLVSRTKKIFVGGIPPALTEDAFKVYFSSFGTITEHQ
Sbjct: 121 KDHVIDGRTVEVKRTVPRADTNDKLVSRTKKIFVGGIPPALTEDAFKVYFSSFGTITEHQ 180

Query: 181 IMIDYRTKRSRGFGFITFENEDAVESIFAGNEKHELGGKQVEIKKAIPRRVSYDSHSNNT 240
           IMIDYRTKRSRGFGFITFENEDAVESIFAGNEKHELGGKQVEIKKAIPRRVSYDSHSNNT
Sbjct: 181 IMIDYRTKRSRGFGFITFENEDAVESIFAGNEKHELGGKQVEIKKAIPRRVSYDSHSNNT 240

Query: 241 AAPPSSGYGMYKCEGLYDDKMGRPFGRYDVYAPFGGYGGNYANFYGAYNYGFGYGGPMYI 300
           AAPPSSGYGMYKCEGLYDDKMGRPFGRYDVYAPFGGYGGNYANFYGAYNYGFGYGGPMYI
Sbjct: 241 AAPPSSGYGMYKCEGLYDDKMGRPFGRYDVYAPFGGYGGNYANFYGAYNYGFGYGGPMYI 300

Query: 301 NGIGRYGMTGYGVPTCYGCTMAERYHPYWY 330
           NGIGRYGMTGYGVP CYGCTMAERYHPYWY
Sbjct: 301 NGIGRYGMTGYGVPNCYGCTMAERYHPYWY 330

[Close]
BLAST of Cp4.1LG17g04720 vs. ExPASy TrEMBL
Match: A0A6J1KEY7 (heterogeneous nuclear ribonucleoprotein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111494401 PE=4 SV=1)

HSP 1 Score: 638 bits (1646), Expect = 8.43e-231
Identity = 310/330 (93.94%), Postives = 320/330 (96.97%), Query Frame = 0 

Query: 1   MAEEKNFNADHNAYHGGDGAVQMYDQQDRFELGSELEGGNADSTGGEVKHSTSHYDSSSS 60
           MAEEKN NAD+NAYHG DGA+QMYDQQD+FELGSELEGGNADSTGGEVKHST HYDSSSS
Sbjct: 1   MAEEKNLNADNNAYHG-DGAIQMYDQQDKFELGSELEGGNADSTGGEVKHSTRHYDSSSS 60

Query: 61  GKLFVGGVSWETTEETFSDYFSKYGEIADSVIMMDKHTGRPRGFGFVTFCDPSVADMVLN 120
           GKLFVGGVSWETTEETF+ YFSKYGEIADSVIMMDKHTGRPRGFGFVTFCDPSVADMVL 
Sbjct: 61  GKLFVGGVSWETTEETFTYYFSKYGEIADSVIMMDKHTGRPRGFGFVTFCDPSVADMVLI 120

Query: 121 KDHVIDGRTVEVKRTVPRADTNDKLVSRTKKIFVGGIPPALTEDAFKVYFSSFGTITEHQ 180
           KDHVIDGRTVEVKRTVPRAD NDKLVSRTKKIFVGGIPPALTEDAFKVYFSSFGTITEHQ
Sbjct: 121 KDHVIDGRTVEVKRTVPRADMNDKLVSRTKKIFVGGIPPALTEDAFKVYFSSFGTITEHQ 180

Query: 181 IMIDYRTKRSRGFGFITFENEDAVESIFAGNEKHELGGKQVEIKKAIPRRVSYDSHSNNT 240
           IMIDY+TKRSRGFGFITFENED+VESIFAGNEKHELGGKQVEIKKAIPRRVSYDS+SNNT
Sbjct: 181 IMIDYKTKRSRGFGFITFENEDSVESIFAGNEKHELGGKQVEIKKAIPRRVSYDSNSNNT 240

Query: 241 AAPPSSGYGMYKCEGLYDDKMGRPFGRYDVYAPFGGYGGNYANFYGAYNYGFGYGGPMYI 300
           AAPPSSGYG+YKC GLYDDKMGRPF  YDVYAPFGGYGGNYANFYGAY+YGFGYGGPMY+
Sbjct: 241 AAPPSSGYGVYKCAGLYDDKMGRPFRGYDVYAPFGGYGGNYANFYGAYSYGFGYGGPMYM 300

Query: 301 NGIGRYGMTGYGVPTCYGCTMAERYHPYWY 330
           NGIGRYGMTGYGVP CYGCTMAERYHPYWY
Sbjct: 301 NGIGRYGMTGYGVPNCYGCTMAERYHPYWY 329

[Close]
BLAST of Cp4.1LG17g04720 vs. ExPASy TrEMBL
Match: A0A0A0K9M1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G450760 PE=4 SV=1)

HSP 1 Score: 479 bits (1233), Expect = 9.09e-168
Identity = 240/343 (69.97%), Postives = 281/343 (81.92%), Query Frame = 0 

Query: 1   MAEEKNFNADHNAYHGGDGAVQMYDQQDRFELGSELEGGNADSTGGEVKHSTSHYDSSSS 60
           MA E+++N D NA +G +   QMYDQQ +F++G+ELE  N DST  E+K+ST+ YDSSSS
Sbjct: 1   MAGERHYNPDFNACNG-ENLAQMYDQQKQFDMGNELEQANVDSTRSEIKNSTTQYDSSSS 60

Query: 61  GKLFVGGVSWETTEETFSDYFSKYGEIADSVIMMDKHTGRPRGFGFVTFCDPSVADMVLN 120
           GKLFVGGV+WETTE+TF DYFSKYGEIADSVIM+DKHTGRPRGFGFVTFCDP++ADMVL 
Sbjct: 61  GKLFVGGVAWETTEDTFRDYFSKYGEIADSVIMIDKHTGRPRGFGFVTFCDPAIADMVLK 120

Query: 121 KDHVIDGRTVEVKRTVPRADTNDKLVSRTKKIFVGGIPPALTEDAFKVYFSSFGTITEHQ 180
            DH+IDGR VEVKRTVPRAD NDK+VSRTKKIFVGGIPP LTE+ FK YFSSFG I EHQ
Sbjct: 121 IDHIIDGRAVEVKRTVPRADMNDKMVSRTKKIFVGGIPPGLTEEEFKDYFSSFGRIIEHQ 180

Query: 181 IMIDYRTKRSRGFGFITFENEDAVESIFAGNEKHELGGKQVEIKKAIPRRVSYDSHSNNT 240
           IMIDY+TKRSRGFGFITFENED+VE+IF+G+  HELGGKQVEIKKA+P+RV+YD +SN+ 
Sbjct: 181 IMIDYKTKRSRGFGFITFENEDSVENIFSGDRIHELGGKQVEIKKAVPKRVAYDFNSNSG 240

Query: 241 AAPPSSGYGMYKCEGLYDDKMGRPFGRYDVYAPFGGYGGNYANFYGAYNYGFGYGGPMYI 300
               +SGY MY+C GLYDD +G  FG YD+YAP+GG+G NYA+FYGAYNYGFGYG  MY+
Sbjct: 241 Q---TSGYDMYRCGGLYDDIIGTDFGPYDLYAPYGGFGVNYASFYGAYNYGFGYGASMYM 300

Query: 301 NGIGRYGMTGYGVPTC-YGC------------TMAERYHPYWY 330
           NG  RYGM GYG P+  YG             +M ER+HPYWY
Sbjct: 301 NG--RYGMNGYGTPSVGYGINGYGKGYEGNGGSMPERFHPYWY 337

[Close]
BLAST of Cp4.1LG17g04720 vs. ExPASy TrEMBL
Match: A0A5D3BYF2 (Heterogeneous nuclear ribonucleoprotein a1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00980 PE=4 SV=1)

HSP 1 Score: 477 bits (1227), Expect = 8.58e-167
Identity = 239/345 (69.28%), Postives = 282/345 (81.74%), Query Frame = 0 

Query: 1   MAEEKNFNADHNAYHGGDGA--VQMYDQQDRFELGSELEGGNADSTGGEVKHSTSHYDSS 60
           MAEE+++N D N  HG +G   +Q  +QQ++F++ +ELE  N DST  E+K+ST+ YDSS
Sbjct: 1   MAEERHYNPDFNICHGENGQNFLQTCNQQEQFDMRNELEQANVDSTRSEIKNSTTQYDSS 60

Query: 61  SSGKLFVGGVSWETTEETFSDYFSKYGEIADSVIMMDKHTGRPRGFGFVTFCDPSVADMV 120
           SSGKLFVGGV+WETTE+TFSDYFSKYGEIADSVIM+DKHTGRPRGFGFVTFCDP++ADMV
Sbjct: 61  SSGKLFVGGVAWETTEDTFSDYFSKYGEIADSVIMIDKHTGRPRGFGFVTFCDPAIADMV 120

Query: 121 LNKDHVIDGRTVEVKRTVPRADTNDKLVSRTKKIFVGGIPPALTEDAFKVYFSSFGTITE 180
           L  DH+IDGR VEVKRTVPRAD NDK+VSRTKKIFVGGIPP LTE  FK YFSSFG I E
Sbjct: 121 LKIDHIIDGRAVEVKRTVPRADMNDKMVSRTKKIFVGGIPPGLTEVEFKDYFSSFGRIIE 180

Query: 181 HQIMIDYRTKRSRGFGFITFENEDAVESIFAGNEKHELGGKQVEIKKAIPRRVSYDSHSN 240
           HQIMIDY+TKRSRGFGFITFENED+V++IF+G+  HELGGKQVEIKKA+P++V+YD +SN
Sbjct: 181 HQIMIDYKTKRSRGFGFITFENEDSVDNIFSGDRIHELGGKQVEIKKAVPKKVAYDFNSN 240

Query: 241 NTAAPPSSGYGMYKCEGLYDDKMGRPFGRYDVYAPFGGYGGNYANFYGAYNYGFGYGGPM 300
           +     SSGY MY+C GLYDD +G  FG YD+YAP+GG+GGNYA+FYGAYNYGFGYG  M
Sbjct: 241 S--GHTSSGYDMYRCGGLYDDIIGTDFGPYDLYAPYGGFGGNYASFYGAYNYGFGYGASM 300

Query: 301 YINGIGRYGMTGYGVPTC-YGC------------TMAERYHPYWY 330
           Y+NG  RYGM GYG P+  YG             +M ER+HPYWY
Sbjct: 301 YMNG--RYGMNGYGAPSVGYGINGYGKGYEGNGGSMPERFHPYWY 341

[Close]
BLAST of Cp4.1LG17g04720 vs. ExPASy TrEMBL
Match: A0A1S3CHA1 (heterogeneous nuclear ribonucleoprotein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500720 PE=4 SV=1)

HSP 1 Score: 475 bits (1223), Expect = 3.49e-166
Identity = 238/345 (68.99%), Postives = 282/345 (81.74%), Query Frame = 0 

Query: 1   MAEEKNFNADHNAYHGGDGA--VQMYDQQDRFELGSELEGGNADSTGGEVKHSTSHYDSS 60
           MAEE+++N D N  HG +G   +Q  +QQ++F++ +ELE  N DST  E+K+ST+ YDSS
Sbjct: 1   MAEERHYNPDFNLCHGENGQNFLQTCNQQEQFDMRNELEQANVDSTRSEIKNSTTQYDSS 60

Query: 61  SSGKLFVGGVSWETTEETFSDYFSKYGEIADSVIMMDKHTGRPRGFGFVTFCDPSVADMV 120
           SSGKLFVGGV+WETTE+TFSDYFSKYGEIADSVIM+DKHTGRPRGFGFVTFCDP++ADMV
Sbjct: 61  SSGKLFVGGVAWETTEDTFSDYFSKYGEIADSVIMIDKHTGRPRGFGFVTFCDPAIADMV 120

Query: 121 LNKDHVIDGRTVEVKRTVPRADTNDKLVSRTKKIFVGGIPPALTEDAFKVYFSSFGTITE 180
           L  DH+IDGR VEVKRTVPRAD NDK+VSRTKKIFVGGIPP LTE  FK YFSSFG I E
Sbjct: 121 LKIDHIIDGRAVEVKRTVPRADMNDKMVSRTKKIFVGGIPPGLTEVEFKDYFSSFGRIIE 180

Query: 181 HQIMIDYRTKRSRGFGFITFENEDAVESIFAGNEKHELGGKQVEIKKAIPRRVSYDSHSN 240
           HQIMIDY+TKRSRGFGFITFENED+V++IF+G+  HELGGKQVEIKKA+P++V+YD +SN
Sbjct: 181 HQIMIDYKTKRSRGFGFITFENEDSVDNIFSGDRIHELGGKQVEIKKAVPKKVAYDFNSN 240

Query: 241 NTAAPPSSGYGMYKCEGLYDDKMGRPFGRYDVYAPFGGYGGNYANFYGAYNYGFGYGGPM 300
           +     SSGY MY+C GLYDD +G  FG YD+YAP+GG+GGNYA+FYGAYNYGFG+G  M
Sbjct: 241 S--GHTSSGYDMYRCGGLYDDIIGTDFGPYDLYAPYGGFGGNYASFYGAYNYGFGFGASM 300

Query: 301 YINGIGRYGMTGYGVPTC-YGC------------TMAERYHPYWY 330
           Y+NG  RYGM GYG P+  YG             +M ER+HPYWY
Sbjct: 301 YMNG--RYGMNGYGAPSVGYGINGYGKGYEGNGGSMPERFHPYWY 341

[Close]
BLAST of Cp4.1LG17g04720 vs. TAIR 10
Match: AT1G17640.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 276.2 bits (705), Expect = 3.5e-74
Identity = 165/333 (49.55%), Postives = 207/333 (62.16%), Query Frame = 0 

Query: 10  DHNAYHGGDGAV--QMYDQ---QDRFEL---GSELEGGNADSTGG-EVKHSTSHYDSSSS 69
           D+N+  G D +    ++D+   Q  FE+        GG A  TGG ++KHS  H  SSSS
Sbjct: 2   DYNSDRGYDDSYHHHVHDEQLPQSDFEVETFDDRRNGGAAVDTGGIQMKHSVDHRHSSSS 61

Query: 70  ----GKLFVGGVSWETTEETFSDYFSKYGEIADSVIMMDKHTGRPRGFGFVTFCDPSVAD 129
               GKLFVGGVSWETT ETF++YF K+GE+ DSVIM D+ TG PRGFGFVTF D +VA+
Sbjct: 62  MSSPGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAE 121

Query: 130 MVLNKDHVIDGRTVEVKRTVPRA--DTNDKLVSRTKKIFVGGIPPALTEDAFKVYFSSFG 189
            VL +DHVID R V++KRT+PR   DT+ K VS+T+KIFVGG+PP L ED  K YF  +G
Sbjct: 122 KVLEEDHVIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYG 181

Query: 190 TITEHQIMIDYRTKRSRGFGFITFENEDAVESIFAGNEKHELGGKQVEIKKAIPRRVSYD 249
            I EHQIM D+ T RSRGFGF+TF+ ED+V+ +F+  + HELG KQVEIK+A P+R   D
Sbjct: 182 DIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPKRTGRD 241

Query: 250 SHSNNTAAPPSSGYGMYKCEGLYDDKMGRPFGRYDVYAPFGGYGG-------NYANFY-- 309
           +   +  A      G Y  E  Y  K    +  Y  Y  +GGYG        N A FY  
Sbjct: 242 NSFRSYGAS-----GKYDQEDSYSGKANEDYSMYSGYGGYGGYGAYAGNSMVNPAGFYGY 301

Query: 310 -GAYNYGFGYGGPMYINGIGRYGM----TGYGV 314
            G Y YG+GYGG M+  G G  G     +GYGV
Sbjct: 302 GGGYGYGYGYGGQMFNMGYGAGGYSHMGSGYGV 329

[Close]
BLAST of Cp4.1LG17g04720 vs. TAIR 10
Match: AT5G40490.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 213.8 bits (543), Expect = 2.1e-55
Identity = 124/264 (46.97%), Postives = 161/264 (60.98%), Query Frame = 0 

Query: 59  SSGKLFVGGVSWETTEETFSDYFSKYGEIADSVIMMDKHTGRPRGFGFVTFCDPSVADMV 118
           S+GK+FVGG++ ETT   F  +F KYGEI DSVIM D+ TG+PRGFGFVT+ D SV D V
Sbjct: 40  SAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKV 99

Query: 119 LNKDHVIDGRTVEVKRTVPRA--DTNDKLVSRTKKIFVGGIPPALTEDAFKVYFSSFGTI 178
           +  +H+I G+ VE+KRT+PR    +ND    +TKKIFVGGIP ++ +D FK +F  FG +
Sbjct: 100 IQDNHIIIGKQVEIKRTIPRGSMSSND---FKTKKIFVGGIPSSVDDDEFKEFFMQFGEL 159

Query: 179 TEHQIMIDYRTKRSRGFGFITFENEDAVESIFAGNEKHELGGKQVEIKKAIPRRVSYDSH 238
            EHQIM D+ T RSRGFGF+T+E+ED V+ + A   + EL G QVEIKKA P++ +  + 
Sbjct: 160 KEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPKKPNSVTT 219

Query: 239 SNNTAAPPSSGYGMYKCEGLYDDKMGRPFGRYDVYAPFGGYGGNYANFYGAYNYGF-GYG 298
            +       S +G    +G      G   G    Y   GGYGG  +  YG Y   F GYG
Sbjct: 220 PSKRFGDSRSNFGGGYGDGYGGGHGGGYGGPGGPYKSGGGYGGGRSGGYGGYGGEFGGYG 279

Query: 299 GPMYINGIGRY-GMTGYGVPTCYG 319
           G  Y  G+G Y G    G    YG
Sbjct: 280 GGGYGGGVGPYRGEPALGYSGRYG 300

[Close]
BLAST of Cp4.1LG17g04720 vs. TAIR 10
Match: AT3G13224.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 211.5 bits (537), Expect = 1.1e-54
Identity = 121/284 (42.61%), Postives = 168/284 (59.15%), Query Frame = 0 

Query: 56  DSSSSGKLFVGGVSWETTEETFSDYFSKYGEIADSVIMMDKHTGRPRGFGFVTFCDPSVA 115
           D +S GK+F+GG+  +TT   F+ +F KYGEI DSVIM D+HTG+PRGFGF+TF DPSV 
Sbjct: 14  DGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVV 73

Query: 116 DMVLNKDHVIDGRTVEVKRTVPR-ADTNDKLVSRTKKIFVGGIPPALTEDAFKVYFSSFG 175
           D V+   HVI+G+ VE+KRT+P+ A  N     +TKKIFVGGIP  +TED  K +F+ +G
Sbjct: 74  DKVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYG 133

Query: 176 TITEHQIMIDYRTKRSRGFGFITFENEDAVESIFAGNEKHELGGKQVEIKKAIPRR---- 235
            + EHQ++ D+ T RSRGFGF+ F++E+ V+ + +     ++   QVEIKKA P++    
Sbjct: 134 NVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPKKSLNR 193

Query: 236 --VSYDSHSNNTAAPPS-SGYGMYKCEGLYDDKMGRPFGRYDVYAPFGGYGGNYANFYGA 295
              SY SH    ++  S + YG     G +D   G P G      P   +GG  + + G 
Sbjct: 194 SPPSYGSHPRGRSSNDSYASYG--GPYGGFDGGYGHPPG------PIRSHGGPASRYAGG 253

Query: 296 YNYGFGYGGPMYINGIGRYG---MTGYGVPTCYGCTMAERYHPY 329
           Y YG G  GP +  G   YG   + GY      G   + R+ PY
Sbjct: 254 YGYGRGSVGPEFGGGYNNYGGGSLGGYRNEPPLG--YSSRFGPY 287

[Close]
BLAST of Cp4.1LG17g04720 vs. TAIR 10
Match: AT4G14300.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 195.3 bits (495), Expect = 7.8e-50
Identity = 118/288 (40.97%), Postives = 158/288 (54.86%), Query Frame = 0 

Query: 58  SSSGKLFVGGVSWETTEETFSDYFSKYGEIADSVIMMDKHTGRPRGFGFVTFCDPSVADM 117
           S  GKLFVGG+SWET E+   ++F+ YGE++ +++M DK TGRPRGFGFV F DPSV D 
Sbjct: 3   SDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDR 62

Query: 118 VLNKDHVIDGRTVEVKRTVPRAD---------------TNDKLVSRTKKIFVGGIPPALT 177
           VL + H ID R V+VKR + R +               +     ++TKKIFVGG+PP LT
Sbjct: 63  VLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLT 122

Query: 178 EDAFKVYFSSFGTITEHQIMIDYRTKRSRGFGFITFENEDAVESIFAGNEKHELGGKQVE 237
           ++ F+ YF  +G +T+  IM D  T R RGFGF++F++EDAV+S+      H+L GKQVE
Sbjct: 123 DEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVL-HKTFHDLSGKQVE 182

Query: 238 IKKAIPRRVSYDSHSNNTAAPPSSGY-GMYKCEGLYDDKMGRPFGRYDVYAPFG------ 297
           +K+A+P+  +      +     S GY G    E  YD +M     R+  +   G      
Sbjct: 183 VKRALPKDANPGGGGRSMGGGGSGGYQGYGGNESSYDGRMDS--NRFLQHQSVGNGLPSY 242

Query: 298 ---GYGGNYANFYGAYNYGFGYGGPMYINGIGRYGMTGYGVPTCYGCT 321
              GYG  Y N      YG  YGG  Y    G YG    G    YG T
Sbjct: 243 GSSGYGAGYGNGSNGAGYG-AYGG--YTGSAGGYGA---GATAGYGAT 281

[Close]
BLAST of Cp4.1LG17g04720 vs. TAIR 10
Match: AT2G33410.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 194.5 bits (493), Expect = 1.3e-49
Identity = 115/280 (41.07%), Postives = 155/280 (55.36%), Query Frame = 0 

Query: 58  SSSGKLFVGGVSWETTEETFSDYFSKYGEIADSVIMMDKHTGRPRGFGFVTFCDPSVADM 117
           S  GKLF+GG+SW+T E    +YFS +GE+    +M +K TGRPRGFGFV F DP+V D 
Sbjct: 3   SDQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDR 62

Query: 118 VLNKDHVIDGRTVEVKRTVPRADTNDKLVS---------------RTKKIFVGGIPPALT 177
           VL   H ID R V+VKR + R + +    S               RTKKIFVGG+PPALT
Sbjct: 63  VLQDKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALT 122

Query: 178 EDAFKVYFSSFGTITEHQIMIDYRTKRSRGFGFITFENEDAVESIFAGNEKHELGGKQVE 237
            D F+ YF ++G +++  IMID  T+R RGFGF++F++ED+V+ +      H+L GKQVE
Sbjct: 123 SDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVL-HKTFHDLNGKQVE 182

Query: 238 IKKAIPRRVSYDSHSNNTAA-------PPSSGYGMYKCEGLYD-DKMGRPFGRYDVYAPF 297
           +K+A+P+  +    S            P   G G    EG  D ++  +P      Y P+
Sbjct: 183 VKRALPKDANPGIASGGGRGSGGAGGFPGYGGSGGSGYEGRVDSNRYMQPQNTGSGYPPY 242

Query: 298 GGYGGNYANFYGAYNYGFGYGGPMYINGIGRYGMTGYGVP 315
           GG G         Y  G+GYG     NG+G  G  GYG P
Sbjct: 243 GGSG---------YGTGYGYGS----NGVGYGGFGGYGNP 268

The following BLAST results are available for this feature:
BLAST of Cp4.1LG17g04720 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8W0341.1e-4840.97Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP... [more]
Q9VVE51.0e-4143.11RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster OX=7227 GN=R... [more]
O944328.5e-4139.81Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe (strain... [more]
Q96DH69.3e-4043.01RNA-binding protein Musashi homolog 2 OS=Homo sapiens OX=9606 GN=MSI2 PE=1 SV=1[more]
Q920Q61.2e-3943.22RNA-binding protein Musashi homolog 2 OS=Mus musculus OX=10090 GN=Msi2 PE=1 SV=1[more]
BLAST of Cp4.1LG17g04720 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023514818.11.85e-248100.00heterogeneous nuclear ribonucleoprotein 1 [Cucurbita pepo subsp. pepo][more]
XP_022964368.11.07e-24799.70heterogeneous nuclear ribonucleoprotein 1 [Cucurbita moschata][more]
KAG6593527.11.03e-24599.09Heterogeneous nuclear ribonucleoprotein 1, partial [Cucurbita argyrosperma subsp... [more]
KAG7025871.12.57e-24295.61Heterogeneous nuclear ribonucleoprotein 1, partial [Cucurbita argyrosperma subsp... [more]
XP_023000106.11.74e-23093.94heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita maxima][more]
BLAST of Cp4.1LG17g04720 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HKL55.19e-24899.70heterogeneous nuclear ribonucleoprotein 1 OS=Cucurbita moschata OX=3662 GN=LOC11... [more]
A0A6J1KEY78.43e-23193.94heterogeneous nuclear ribonucleoprotein 1-like OS=Cucurbita maxima OX=3661 GN=LO... [more]
A0A0A0K9M19.09e-16869.97Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G450760 PE=4 SV=1[more]
A0A5D3BYF28.58e-16769.28Heterogeneous nuclear ribonucleoprotein a1 OS=Cucumis melo var. makuwa OX=119469... [more]
A0A1S3CHA13.49e-16668.99heterogeneous nuclear ribonucleoprotein 1 isoform X1 OS=Cucumis melo OX=3656 GN=... [more]
BLAST of Cp4.1LG17g04720 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G17640.13.5e-7449.55RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G40490.12.1e-5546.97RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT3G13224.21.1e-5442.61RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT4G14300.17.8e-5040.97RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT2G33410.11.3e-4941.07RNA-binding (RRM/RBD/RNP motifs) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 151..224
e-value: 2.0E-20
score: 83.9
coord: 62..133
e-value: 4.9E-24
score: 95.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 63..128
e-value: 8.3E-14
score: 51.2
coord: 152..221
e-value: 6.2E-16
score: 58.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 150..228
score: 16.926517
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 61..137
score: 16.977684
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 59..142
e-value: 1.2E-26
score: 94.7
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 146..240
e-value: 7.9E-23
score: 82.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..60
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..60
NoneNo IPR availablePANTHERPTHR48033RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEINcoord: 49..313
NoneNo IPR availablePANTHERPTHR48033:SF10RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEINcoord: 49..313
NoneNo IPR availableCDDcd12325RRM1_hnRNPA_hnRNPD_likecoord: 63..133
e-value: 4.37397E-38
score: 128.472
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 147..237
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 53..140

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG17g04720.1Cp4.1LG17g04720.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030154 cell differentiation
biological_process GO:0010468 regulation of gene expression
cellular_component GO:0005654 nucleoplasm
molecular_function GO:0005516 calmodulin binding
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003676 nucleic acid binding