Cp4.1LG17g01970 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG17g01970
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionDDE Tnp4 domain-containing protein
LocationCp4.1LG17: 1228523 .. 1230208 (+)
RNA-Seq ExpressionCp4.1LG17g01970
SyntenyCp4.1LG17g01970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGTTTTGGTGGCTGGTAAATGGGAGTAGCGGGAGGCTGTGGTTTATAAATTGGACTCATCGGAGGTTTGGGTGGTTTGTGAACTGGACGGACGGGAGGTTTTGGTGGTTTGTGAATTGGACCAACTCGAGGTTTCGGTGGTTTGTGAATTGGACTGACTGGAGGGTTGGGTGGTTTGTCAATTGGACCGACTGGAGGCTTGGGTGGCGGTTTGTCAATTGGACCGACTGGAGGCTTGGGAGGTTTGTCAATTGGACTGACTGGAGGCTTGGGTGGTTTGTCTATTGGACCGACGGGAGGCTTTGGTGGTTTGTGAATTGGACCAACTGGAGGCTTGGGAGGTTTGTGAATTGGACCGACTGGAGGCTTGGGAGGTTTGTCAATTGGACCGACTGGAGGCTTGGGAGGTTGGTCTATTGGACCGACGGGAGGCTTTGGTGGTTTGTCAATTGGACCAACGGGAGGCTTGGGAGGTTTGTCAATTGGACCAACTGGAGGTTTTGGTGGTTTGTCAACTGGACCGACTGGAGGCTTGGGTGGTTTGTGAATTGGACTGACTGGAGGCTTGGGAGGTTTGTCTATTGGACCGACTGGAGGCTTGGGTGGTTTGTGAATTGGACCGACGGGAGGCTTTGGTGGTTTATCAATTGGACCAACTGGAGACTTGGGAGGTTTGTCAATTGGACCGACTGGAGGCTTGGGAGGTTTGTCAATTGGACCGACCGGAGGCTTGGGTGGTTTGTGAATTAGACCGACGGGAGGCTTTGGTGGTTTATCAATTGGACCAACTGGAGGCTTGGGAGGTTTGTCAATTGGACCGACTGGAGGCTTGGGTGGTTTGTCTATTGGACCGACTGGAGGCTTTGGTGGTTTATCAATTGGACCAACTGGAGGCTTGGGAGGTTTGTCAATTGGACCGACGGGAGGCTTGGGTGGTTTATCAATTGGACCAACTGGAGACTTGGGAGGTTTGTCAATTGGACCGACTGGAGGCTTGGGAGGTTTGTCAATTGGACCGACCGGAGGCTTGGGTGGTTTGTGAATTGGACCGACGGGAGGCTTTGGTGGTTTATCAATTGGACCAACTGGAGGCTTGGGAGGTTTGTGAATTGGACCGACTGGAGGCTTGGGAGGTTTGTCAATTGAACCGACCGGAGGCTTGGGTGGTTTGTGAATTGGACCGACTGGAGGCTTTGGTGGTTTATCAATTGGACCAACTGGAGGCTTGGGAGGTTTGTCAATTGGACCGACCGGAGGCTTGGGTGGTTTGTGAATTGGATCGACCGGAGGCTTTGGTGATTTGTCAACTGGATCGACTGGAGGCTTAGGTGGTTTGTGTATTGGACCGACCGGAGGCTTTGGTGGTTTGTGGAGTGAAGGCTTTGGTGGTTTGTGAATTGTTACTACCGGAGGCTTAGGTGGTTTGTCAAATGGACCGGGAGGTTTGTATATGGGAACTAGGGGAAGCTTGGGGGGTTCGTAAATTGGAATTGATGGTGGGTTTGGAGGTTGAGTCTCACCGGCGTTATCTCCAACGGCCGGTTTGGTGAGAACCACCGCGAGCAGGCCAAGAAGGAGAGCTAACAGGTAGGAGGAAGTCATTTTTGTGGGTTTGTGATTACCAACTCGAAGGAAATGACACGTATTTAAAGACACAATTATGAGGTAAATTATTCAAAATG

mRNA sequence

ATGGAGGCTTGGGTGGTTTGTCTATTGGACCGACGGGAGGCTTTGGTGGTTTGTGAATTGGACCAACTGGAGGCTTGGGAGGTTTGTGAATTGGACCGACTGGAGGCTTGGGAGGTTTGTCAATTGGACCGACTGGAGGCTTGGGAGGTTGGTCTATTGGACCGACGGGAGGCTTTGGTGGTTTGTCAATTGGACCAACGGGAGGCTTGGGAGGTTTGTCAATTGGACCAACTGGAGGTTTTGGTGGTTTGTCAACTGGACCGACTGGAGGCTTGGGTGGTTTGTGAATTGGACCGACTGGAGGCTTGGGAGGTTTGTCAATTGAACCGACCGGAGGCTTGGGTGGTTTGTGAATTGGACCGACTGGAGGCTTTGGTGGTTTATCAATTGGACCAACTGGAGGCTTGGGAGGTTTGTCAATTGGACCGACCGGAGGCTTGGGTGGTTTGTGAATTGGATCGACCGGAGGCTTTGGTGATTTGTCAACTGGATCGACTGGAGGCTTAGGTGGTTTGTGTATTGGACCGACCGGAGGCTTTGGTGGTTTGTGGAGTGAAGGCTTTGGTGGTTTGTGAATTGTTACTACCGGAGGCTTAGGTGGTTTGTCAAATGGACCGGGAGGTTTGTATATGGGAACTAGGGGAAGCTTGGGGGGTTCGTAAATTGGAATTGATGGTGGGTTTGGAGGTTGAGTCTCACCGGCGTTATCTCCAACGGCCGGTTTGGTGAGAACCACCGCGAGCAGGCCAAGAAGGAGAGCTAACAGGTAGGAGGAAGTCATTTTTGTGGGTTTGTGATTACCAACTCGAAGGAAATGACACGTATTTAAAGACACAATTATGAGGTAAATTATTCAAAATG

Coding sequence (CDS)

ATGGAGGCTTGGGTGGTTTGTCTATTGGACCGACGGGAGGCTTTGGTGGTTTGTGAATTGGACCAACTGGAGGCTTGGGAGGTTTGTGAATTGGACCGACTGGAGGCTTGGGAGGTTTGTCAATTGGACCGACTGGAGGCTTGGGAGGTTGGTCTATTGGACCGACGGGAGGCTTTGGTGGTTTGTCAATTGGACCAACGGGAGGCTTGGGAGGTTTGTCAATTGGACCAACTGGAGGTTTTGGTGGTTTGTCAACTGGACCGACTGGAGGCTTGGGTGGTTTGTGAATTGGACCGACTGGAGGCTTGGGAGGTTTGTCAATTGAACCGACCGGAGGCTTGGGTGGTTTGTGAATTGGACCGACTGGAGGCTTTGGTGGTTTATCAATTGGACCAACTGGAGGCTTGGGAGGTTTGTCAATTGGACCGACCGGAGGCTTGGGTGGTTTGTGAATTGGATCGACCGGAGGCTTTGGTGATTTGTCAACTGGATCGACTGGAGGCTTAG

Protein sequence

MEAWVVCLLDRREALVVCELDQLEAWEVCELDRLEAWEVCQLDRLEAWEVGLLDRREALVVCQLDQREAWEVCQLDQLEVLVVCQLDRLEAWVVCELDRLEAWEVCQLNRPEAWVVCELDRLEALVVYQLDQLEAWEVCQLDRPEAWVVCELDRPEALVICQLDRLEA
Homology
BLAST of Cp4.1LG17g01970 vs. NCBI nr
Match: GCC42939.1 (hypothetical protein [Chiloscyllium punctatum])

HSP 1 Score: 105 bits (261), Expect = 3.44e-24
Identity = 65/163 (39.88%), Postives = 76/163 (46.63%), Query Frame = 0

Query: 6   VCLLDRREALVVCELDQLEAWEVCELDRLEAWEVCQLDRLEAWEVGLLDRREALVVCQLD 65
           VC LD   A  VC+ D   A  VC+LD   A  VCQ D   A  V  LD   A +VCQ D
Sbjct: 38  VCELDSSRAESVCQFDSTHAESVCDLDSARAESVCQFDSARAESVYDLDSARAELVCQFD 97

Query: 66  QREAWEVCQLDQLEVLVVCQLDRLEAWVVCELDRLEAWEVCQLNRPEAWVVCELDRLEAL 125
              A  V  LD      VCQ DR  A +V +LD   A  VC LN     +VC+ D   A 
Sbjct: 98  SARAESVYDLDSARAESVCQFDRTRAELVRDLDSSRAESVCDLNSACDELVCQFDSARAE 157

Query: 126 VVYQLDQLEAWEVCQLDRPEAWVVCELDRPEALVICQLDRLEA 168
           +V  LD      VCQ D   A  VC+ D   A ++C LD   A
Sbjct: 158 LVCDLDSACDELVCQFDSTRAESVCQFDSTRAELVCDLDSARA 200

BLAST of Cp4.1LG17g01970 vs. NCBI nr
Match: PLW41581.1 (hypothetical protein PCANC_17446 [Puccinia coronata f. sp. avenae])

HSP 1 Score: 99.0 bits (245), Expect = 1.33e-22
Identity = 64/160 (40.00%), Postives = 82/160 (51.25%), Query Frame = 0

Query: 9   LDRREALVVCELDQLEAWEVCELDRLEAWEVCQLDRLEAWEVGLLDRREALVVCQLDQRE 68
           LD  E L+  EL +LE     ELD LE     +LD L+ W    L   E LV  +L + E
Sbjct: 12  LDELEFLLGAELGELEFLVGAELDELECVVGTELDELQIWVGAELSELEFLVGAELSELE 71

Query: 69  AWEVCQLDQLEVLVVCQLDRLEAWVVCELDRLEAWEVCQLNRPEAWVVCELDRLEALVVY 128
                +LD+LE LV  +LD LE  V  EL  LE W   +L+  E WV  EL +LE  V  
Sbjct: 72  FLVGAELDELEFLVGAELDELEFLVRTELGELEIWVGAELDELEIWVGAELAKLEIWVGA 131

Query: 129 QLDQLEAWEVCQLDRPEAWVVCELDRPEALVICQLDRLEA 168
           +L +LE W   +LD  E WV  ELD  E  V+ +L   E+
Sbjct: 132 ELSELEFWVGAELDELEIWVGAELDELEICVVVELVECES 171

BLAST of Cp4.1LG17g01970 vs. NCBI nr
Match: PLW42071.1 (hypothetical protein PCASD_11963 [Puccinia coronata f. sp. avenae])

HSP 1 Score: 95.1 bits (235), Expect = 1.38e-20
Identity = 67/172 (38.95%), Postives = 86/172 (50.00%), Query Frame = 0

Query: 9   LDRREALVVCELDQLEAWEVCELDRLEAWEVCQLDRLEAWEVGLLDRREALVVCQLDQRE 68
           +D  E LV  EL +L+ W   E D LE W   +L  LE      LD  E LV  +L + +
Sbjct: 1   MDELEFLVGRELGELQIWVGAEPDELEIWVGAELSELEFLVEAELDELEFLVQTELGELK 60

Query: 69  AWEVCQLDQLE-----------VLVVCQLDRLEAWVVCELDR--LEAWEVCQLNRPEAWV 128
            W   +LD LE           +LV  +LD LE  V  EL+R  LE W   +L++ E WV
Sbjct: 61  IWVETELDDLEFLLGAELGELDLLVGAELDELECVVGTELERGELEIWVGAELDKLEIWV 120

Query: 129 VCELDRLEALVVYQLDQLEAWEVCQLDRPEAWVVCELDRPEALVICQLDRLE 167
             EL  LE LV  +LD+LE W   +LD  E  V  EL   E LV  ++D LE
Sbjct: 121 GAELSELEFLVGLELDELEIWVGAELDELEICVGEELSELEFLVGAEMDELE 172

BLAST of Cp4.1LG17g01970 vs. NCBI nr
Match: KAE8612826.1 (hypothetical protein XENTR_v10013008 [Xenopus tropicalis])

HSP 1 Score: 92.0 bits (227), Expect = 4.49e-18
Identity = 61/167 (36.53%), Postives = 100/167 (59.88%), Query Frame = 0

Query: 2   EAWVVCLLDRREALVVCELDQLEAWEVCELDRLEAWEVCQLDRLEAWEVGLLDRREALVV 61
           EA ++ +LD+ EA ++  LD+ EA+ +  LD+ EA  +  LD+ EA  +G LD+ EA V+
Sbjct: 327 EAHLMGVLDKAEAYLMETLDKAEAYLIETLDKAEAHLMGALDKAEAHLIGALDKAEAHVM 386

Query: 62  CQLDQREAWEVCQLDQLEVLVVCQLDRLEAWVVCELDRLEAWEVCQLNRPEAWVVCELDR 121
             LD+ EA  +  LD+ E  V+  LD+ EA V+  LD+ EA  +  L++ E  ++  LD+
Sbjct: 387 GALDKAEAHVMGALDKAEAHVMGALDKAEAHVMGALDKAEAHLMAALHKAEVHLIGALDK 446

Query: 122 LEALVVYQLDQLEAWEVCQLDRPEAWVVCELDRPEALVICQLDRLEA 168
            EA ++  LD+ EA  +  LD+ E  ++  LD+ E  ++  LD+ EA
Sbjct: 447 AEAHLMGALDKAEAHLMGALDKAEVHLMGALDKAEVHLMGALDKAEA 493

BLAST of Cp4.1LG17g01970 vs. NCBI nr
Match: GCC45258.1 (hypothetical protein [Chiloscyllium punctatum])

HSP 1 Score: 86.7 bits (213), Expect = 8.62e-18
Identity = 56/138 (40.58%), Postives = 65/138 (47.10%), Query Frame = 0

Query: 9   LDRREALVVCELDQLEAWEVCELDRLEAWEVCQLDRLEAWEVGLLDRREALVVCQLDQRE 68
           L+   A   C+LD   A  VC+L    A  VC LD + A  V +LD   A  VC+LD   
Sbjct: 37  LESTRAESACKLDSTHAESVCDLYSARAESVCVLDSIRAESVCVLDSARAESVCELDSTR 96

Query: 69  AWEVCQLDQLEVLVVCQLDRLEAWVVCELDRLEAWEVCQLNRPEAWVVCELDRLEALVVY 128
           A  VC LD      VC LD   A  VCELD   A  VC L+   A  VC+LD   A  V 
Sbjct: 97  AESVCDLDSACAESVCVLDSARAESVCELDSACAESVCVLDSARAESVCDLDSTRAESVC 156

Query: 129 QLDQLEAWEVCQLDRPEA 146
            LD   A  VC L+   A
Sbjct: 157 DLDSACAESVCDLESTRA 174

BLAST of Cp4.1LG17g01970 vs. ExPASy TrEMBL
Match: A0A401TJW8 (Uncharacterized protein (Fragment) OS=Chiloscyllium punctatum OX=137246 GN=chiPu_0026894 PE=4 SV=1)

HSP 1 Score: 105 bits (261), Expect = 1.66e-24
Identity = 65/163 (39.88%), Postives = 76/163 (46.63%), Query Frame = 0

Query: 6   VCLLDRREALVVCELDQLEAWEVCELDRLEAWEVCQLDRLEAWEVGLLDRREALVVCQLD 65
           VC LD   A  VC+ D   A  VC+LD   A  VCQ D   A  V  LD   A +VCQ D
Sbjct: 38  VCELDSSRAESVCQFDSTHAESVCDLDSARAESVCQFDSARAESVYDLDSARAELVCQFD 97

Query: 66  QREAWEVCQLDQLEVLVVCQLDRLEAWVVCELDRLEAWEVCQLNRPEAWVVCELDRLEAL 125
              A  V  LD      VCQ DR  A +V +LD   A  VC LN     +VC+ D   A 
Sbjct: 98  SARAESVYDLDSARAESVCQFDRTRAELVRDLDSSRAESVCDLNSACDELVCQFDSARAE 157

Query: 126 VVYQLDQLEAWEVCQLDRPEAWVVCELDRPEALVICQLDRLEA 168
           +V  LD      VCQ D   A  VC+ D   A ++C LD   A
Sbjct: 158 LVCDLDSACDELVCQFDSTRAESVCQFDSTRAELVCDLDSARA 200

BLAST of Cp4.1LG17g01970 vs. ExPASy TrEMBL
Match: A0A2N5UUY6 (Uncharacterized protein OS=Puccinia coronata f. sp. avenae OX=200324 GN=PCANC_17446 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 6.44e-23
Identity = 64/160 (40.00%), Postives = 82/160 (51.25%), Query Frame = 0

Query: 9   LDRREALVVCELDQLEAWEVCELDRLEAWEVCQLDRLEAWEVGLLDRREALVVCQLDQRE 68
           LD  E L+  EL +LE     ELD LE     +LD L+ W    L   E LV  +L + E
Sbjct: 12  LDELEFLLGAELGELEFLVGAELDELECVVGTELDELQIWVGAELSELEFLVGAELSELE 71

Query: 69  AWEVCQLDQLEVLVVCQLDRLEAWVVCELDRLEAWEVCQLNRPEAWVVCELDRLEALVVY 128
                +LD+LE LV  +LD LE  V  EL  LE W   +L+  E WV  EL +LE  V  
Sbjct: 72  FLVGAELDELEFLVGAELDELEFLVRTELGELEIWVGAELDELEIWVGAELAKLEIWVGA 131

Query: 129 QLDQLEAWEVCQLDRPEAWVVCELDRPEALVICQLDRLEA 168
           +L +LE W   +LD  E WV  ELD  E  V+ +L   E+
Sbjct: 132 ELSELEFWVGAELDELEIWVGAELDELEICVVVELVECES 171

BLAST of Cp4.1LG17g01970 vs. ExPASy TrEMBL
Match: A0A2N5UWD4 (Uncharacterized protein OS=Puccinia coronata f. sp. avenae OX=200324 GN=PCASD_11963 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 6.69e-21
Identity = 67/172 (38.95%), Postives = 86/172 (50.00%), Query Frame = 0

Query: 9   LDRREALVVCELDQLEAWEVCELDRLEAWEVCQLDRLEAWEVGLLDRREALVVCQLDQRE 68
           +D  E LV  EL +L+ W   E D LE W   +L  LE      LD  E LV  +L + +
Sbjct: 1   MDELEFLVGRELGELQIWVGAEPDELEIWVGAELSELEFLVEAELDELEFLVQTELGELK 60

Query: 69  AWEVCQLDQLE-----------VLVVCQLDRLEAWVVCELDR--LEAWEVCQLNRPEAWV 128
            W   +LD LE           +LV  +LD LE  V  EL+R  LE W   +L++ E WV
Sbjct: 61  IWVETELDDLEFLLGAELGELDLLVGAELDELECVVGTELERGELEIWVGAELDKLEIWV 120

Query: 129 VCELDRLEALVVYQLDQLEAWEVCQLDRPEAWVVCELDRPEALVICQLDRLE 167
             EL  LE LV  +LD+LE W   +LD  E  V  EL   E LV  ++D LE
Sbjct: 121 GAELSELEFLVGLELDELEIWVGAELDELEICVGEELSELEFLVGAEMDELE 172

BLAST of Cp4.1LG17g01970 vs. ExPASy TrEMBL
Match: A0A401TRL6 (Uncharacterized protein (Fragment) OS=Chiloscyllium punctatum OX=137246 GN=chiPu_0029226 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.18e-18
Identity = 56/138 (40.58%), Postives = 65/138 (47.10%), Query Frame = 0

Query: 9   LDRREALVVCELDQLEAWEVCELDRLEAWEVCQLDRLEAWEVGLLDRREALVVCQLDQRE 68
           L+   A   C+LD   A  VC+L    A  VC LD + A  V +LD   A  VC+LD   
Sbjct: 37  LESTRAESACKLDSTHAESVCDLYSARAESVCVLDSIRAESVCVLDSARAESVCELDSTR 96

Query: 69  AWEVCQLDQLEVLVVCQLDRLEAWVVCELDRLEAWEVCQLNRPEAWVVCELDRLEALVVY 128
           A  VC LD      VC LD   A  VCELD   A  VC L+   A  VC+LD   A  V 
Sbjct: 97  AESVCDLDSACAESVCVLDSARAESVCELDSACAESVCVLDSARAESVCDLDSTRAESVC 156

Query: 129 QLDQLEAWEVCQLDRPEA 146
            LD   A  VC L+   A
Sbjct: 157 DLDSACAESVCDLESTRA 174

BLAST of Cp4.1LG17g01970 vs. ExPASy TrEMBL
Match: A0A2N5SWT8 (Uncharacterized protein OS=Puccinia coronata f. sp. avenae OX=200324 GN=PCASD_18663 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.83e-18
Identity = 61/146 (41.78%), Postives = 74/146 (50.68%), Query Frame = 0

Query: 9   LDRREALVVCELDQLEAWEVCELDRLEA--WEVCQLDRLEAWEVGLLDRREALVVCQLDQ 68
           LD  E L+  EL +LE     ELD LE       +L  LE      L   E LV  +LD+
Sbjct: 99  LDELEFLLGAELGELEFLVGAELDELECVVGTELELSELEFLVGAELSELEFLVGAELDE 158

Query: 69  REAWEVCQLDQLEVLVVCQLDRLEAWVVCELDRLEAWEVCQLNRPEAWVVCELDRLEALV 128
            E     +LD+LE LV  +L  LE WV  ELD LE W   +L + E WV  EL  LE  V
Sbjct: 159 LEFLVGAELDELEFLVRTELGELEIWVGAELDELEIWVGAELAKLEIWVGAELSELEFWV 218

Query: 129 VYQLDQLEAWEVCQLDRPEAWVVCEL 152
             +LD+LE W   +LD  E  VV EL
Sbjct: 219 GAELDELEIWVGAELDELEICVVVEL 244

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GCC42939.13.44e-2439.88hypothetical protein [Chiloscyllium punctatum][more]
PLW41581.11.33e-2240.00hypothetical protein PCANC_17446 [Puccinia coronata f. sp. avenae][more]
PLW42071.11.38e-2038.95hypothetical protein PCASD_11963 [Puccinia coronata f. sp. avenae][more]
KAE8612826.14.49e-1836.53hypothetical protein XENTR_v10013008 [Xenopus tropicalis][more]
GCC45258.18.62e-1840.58hypothetical protein [Chiloscyllium punctatum][more]
Match NameE-valueIdentityDescription
A0A401TJW81.66e-2439.88Uncharacterized protein (Fragment) OS=Chiloscyllium punctatum OX=137246 GN=chiPu... [more]
A0A2N5UUY66.44e-2340.00Uncharacterized protein OS=Puccinia coronata f. sp. avenae OX=200324 GN=PCANC_17... [more]
A0A2N5UWD46.69e-2138.95Uncharacterized protein OS=Puccinia coronata f. sp. avenae OX=200324 GN=PCASD_11... [more]
A0A401TRL64.18e-1840.58Uncharacterized protein (Fragment) OS=Chiloscyllium punctatum OX=137246 GN=chiPu... [more]
A0A2N5SWT86.83e-1841.78Uncharacterized protein OS=Puccinia coronata f. sp. avenae OX=200324 GN=PCASD_18... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG17g01970.1Cp4.1LG17g01970.1mRNA