Cp4.1LG16g09240 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGGGGAAGGAATTGATTATGAAAGTGAGGGAGGGTAAGAATATGGCCAAAAAGATGGGAGGTAGGGTGGGCAGTCCAATAATATAATTACAATGCAATACATTATGAGTGGGTGTAATAACTGCTAAACCAACCACCCACTTCCTTTATTTCCCATCCGCCATATCATACACCATAAAGCCCCCACTCCCCCTCCTCCCCTTCCTCCCCATCCATTCTGCCGCGCATTGCCATCCCTCCCAACCAGAGTCATGGCCTCCAAATCCTCTTCAACTAATTATACGGCTCTCATCTCATGCGCCATGGCGCTCCTTTTAGTGGGGTTTGTGAGCTCCAACGTAGACCAGGACAGGGCAGAGTGCGCGGACCAGGTGGTTGGGCTGGCCACTTGCTTGCCGTACGTGGGCGGGGAGGCGAGAGCACCGACGCCGGACTGTTGCAGTGGGCTCAAGGTTGTGCTTGAGAAGAGTAAGAAATGTCTTTGTGTGTTGATAAAGGACCGTAACGATCCAAGCCTGGGACTTAAAGTTAATCTTACGCTTGCTCTTGGACTGCCTAATGCATGCCATGCCCCTGCCAACATCCAAGACTGCATCGGTATATTTCATCGTTATGATTCCTGTGGCTTTAGTTTGAATTTTGATGAACAATTAATCCGAAAATTAAACATAATATATTACAAGTTTATGTATTCTTCTTGCTTTTGGTAATTGAGTATGTGGGTTATAGGGCTTCTCCATCTGTCGCCCAACTCCCAAGATGCTAAGGATTTTATGGGCACCAAGGGAGCCAACACTACAGCCGCACCTGCTACTGCTGGTAATCCATATTTGTGTTTATCTCTTAATTATTTTATTAATTACATTTATTAAAGCGTATTTCTAAATGTTAATTAAAATAATGGTTTGCAGCGCCTGGGAATTCCACCCAAACTCCCGTGGAGAAAGGTAGCGGAATGAGGAATCAATGGTTGGGTGTGGAGATGTTCATTGGGTTTCTCACTTCATCGCTTCTATTCACTTGTATTTGGTAGTTCTATTTTTATTTTATTGTCCCCACCACAAACTTTTTCTTCTTTCCAATTTAACTTAATGTTGAACTTTTAAATTTTTTAGTCGAAGATATATGTGTTAAACTGATTGAACTATGATTAAATGGTTCAAGTTTTATTTTTGTGGAGCTACAAAAGTATATTTATATAAGAAATTGGCCTAAAATTCTCACCTTTCCTTCTTAAATTAAGTTAAAAAAGAACTAAATTGGACTTAAGGGTCTCCTAGGTTGTAGGTGTGCATAAAGCACAACTCATTTGACAAAGTGAGCTCCTCGAGCTTGGCCATGGCAGGGATTGGGGCAAGAGAAGAAA TGGGGAAGGAATTGATTATGAAAGTGAGGGAGGGTAAGAATATGGCCAAAAAGATGGGAGGTAGGGTGGGCAGTCCAATAATATAATTACAATGCAATACATTATGAGTGGGTGTAATAACTGCTAAACCAACCACCCACTTCCTTTATTTCCCATCCGCCATATCATACACCATAAAGCCCCCACTCCCCCTCCTCCCCTTCCTCCCCATCCATTCTGCCGCGCATTGCCATCCCTCCCAACCAGAGTCATGGCCTCCAAATCCTCTTCAACTAATTATACGGCTCTCATCTCATGCGCCATGGCGCTCCTTTTAGTGGGGTTTGTGAGCTCCAACGTAGACCAGGACAGGGCAGAGTGCGCGGACCAGGTGGTTGGGCTGGCCACTTGCTTGCCGTACGTGGGCGGGGAGGCGAGAGCACCGACGCCGGACTGTTGCAGTGGGCTCAAGGTTGTGCTTGAGAAGAGTAAGAAATGTCTTTGTGTGTTGATAAAGGACCGTAACGATCCAAGCCTGGGACTTAAAGTTAATCTTACGCTTGCTCTTGGACTGCCTAATGCATGCCATGCCCCTGCCAACATCCAAGACTGCATCGGGCTTCTCCATCTGTCGCCCAACTCCCAAGATGCTAAGGATTTTATGGGCACCAAGGGAGCCAACACTACAGCCGCACCTGCTACTGCTGCGCCTGGGAATTCCACCCAAACTCCCGTGGAGAAAGGTAGCGGAATGAGGAATCAATGGTTGGGTGTGGAGATGTTCATTGGGTTTCTCACTTCATCGCTTCTATTCACTTGTATTTGGTAGTTCTATTTTTATTTTATTGTCCCCACCACAAACTTTTTCTTCTTTCCAATTTAACTTAATGTTGAACTTTTAAATTTTTTAGTCGAAGATATATGTGTTAAACTGATTGAACTATGATTAAATGGTTCAAGTTTTATTTTTGTGGAGCTACAAAAGTATATTTATATAAGAAATTGGCCTAAAATTCTCACCTTTCCTTCTTAAATTAAGTTAAAAAAGAACTAAATTGGACTTAAGGGTCTCCTAGGTTGTAGGTGTGCATAAAGCACAACTCATTTGACAAAGTGAGCTCCTCGAGCTTGGCCATGGCAGGGATTGGGGCAAGAGAAGAAA ATGGCCTCCAAATCCTCTTCAACTAATTATACGGCTCTCATCTCATGCGCCATGGCGCTCCTTTTAGTGGGGTTTGTGAGCTCCAACGTAGACCAGGACAGGGCAGAGTGCGCGGACCAGGTGGTTGGGCTGGCCACTTGCTTGCCGTACGTGGGCGGGGAGGCGAGAGCACCGACGCCGGACTGTTGCAGTGGGCTCAAGGTTGTGCTTGAGAAGAGTAAGAAATGTCTTTGTGTGTTGATAAAGGACCGTAACGATCCAAGCCTGGGACTTAAAGTTAATCTTACGCTTGCTCTTGGACTGCCTAATGCATGCCATGCCCCTGCCAACATCCAAGACTGCATCGGGCTTCTCCATCTGTCGCCCAACTCCCAAGATGCTAAGGATTTTATGGGCACCAAGGGAGCCAACACTACAGCCGCACCTGCTACTGCTGCGCCTGGGAATTCCACCCAAACTCCCGTGGAGAAAGGTAGCGGAATGAGGAATCAATGGTTGGGTGTGGAGATGTTCATTGGGTTTCTCACTTCATCGCTTCTATTCACTTGTATTTGGTAG MASKSSSTNYTALISCAMALLLVGFVSSNVDQDRAECADQVVGLATCLPYVGGEARAPTPDCCSGLKVVLEKSKKCLCVLIKDRNDPSLGLKVNLTLALGLPNACHAPANIQDCIGLLHLSPNSQDAKDFMGTKGANTTAAPATAAPGNSTQTPVEKGSGMRNQWLGVEMFIGFLTSSLLFTCIW Homology
BLAST of Cp4.1LG16g09240 vs. ExPASy Swiss-Prot
Match: O64865 (Non-specific lipid transfer protein GPI-anchored 14 OS=Arabidopsis thaliana OX=3702 GN=LTPG14 PE=2 SV=1) HSP 1 Score: 161.0 bits (406), Expect = 1.3e-38 Identity = 87/197 (44.16%), Postives = 121/197 (61.42%), Query Frame = 0
BLAST of Cp4.1LG16g09240 vs. ExPASy Swiss-Prot
Match: F4I082 (Non-specific lipid transfer protein GPI-anchored 6 OS=Arabidopsis thaliana OX=3702 GN=LTPG6 PE=2 SV=2) HSP 1 Score: 154.8 bits (390), Expect = 9.3e-37 Identity = 79/178 (44.38%), Postives = 112/178 (62.92%), Query Frame = 0
BLAST of Cp4.1LG16g09240 vs. ExPASy Swiss-Prot
Match: O64864 (Non-specific lipid transfer protein GPI-anchored 13 OS=Arabidopsis thaliana OX=3702 GN=LTPG13 PE=2 SV=1) HSP 1 Score: 149.1 bits (375), Expect = 5.1e-35 Identity = 85/206 (41.26%), Postives = 118/206 (57.28%), Query Frame = 0
BLAST of Cp4.1LG16g09240 vs. ExPASy Swiss-Prot
Match: Q9M2G1 (Non-specific lipid transfer protein GPI-anchored 22 OS=Arabidopsis thaliana OX=3702 GN=LTPG22 PE=2 SV=1) HSP 1 Score: 108.6 bits (270), Expect = 7.6e-23 Identity = 61/156 (39.10%), Postives = 88/156 (56.41%), Query Frame = 0
BLAST of Cp4.1LG16g09240 vs. ExPASy Swiss-Prot
Match: Q9LJ86 (Non-specific lipid transfer protein GPI-anchored 5 OS=Arabidopsis thaliana OX=3702 GN=LTPG5 PE=2 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 3.3e-10 Identity = 45/145 (31.03%), Postives = 77/145 (53.10%), Query Frame = 0
BLAST of Cp4.1LG16g09240 vs. NCBI nr
Match: XP_023512874.1 (protein YLS3-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 373 bits (958), Expect = 1.94e-130 Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0
BLAST of Cp4.1LG16g09240 vs. NCBI nr
Match: XP_022986686.1 (protein YLS3-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 363 bits (932), Expect = 1.79e-126 Identity = 178/185 (96.22%), Postives = 182/185 (98.38%), Query Frame = 0
BLAST of Cp4.1LG16g09240 vs. NCBI nr
Match: KAG7010231.1 (Protein YLS3 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 362 bits (930), Expect = 3.61e-126 Identity = 178/185 (96.22%), Postives = 182/185 (98.38%), Query Frame = 0
BLAST of Cp4.1LG16g09240 vs. NCBI nr
Match: XP_022943979.1 (protein YLS3-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 358 bits (919), Expect = 1.72e-124 Identity = 177/185 (95.68%), Postives = 180/185 (97.30%), Query Frame = 0
BLAST of Cp4.1LG16g09240 vs. NCBI nr
Match: XP_022986687.1 (protein YLS3-like isoform X2 [Cucurbita maxima]) HSP 1 Score: 355 bits (911), Expect = 2.66e-123 Identity = 176/185 (95.14%), Postives = 180/185 (97.30%), Query Frame = 0
BLAST of Cp4.1LG16g09240 vs. ExPASy TrEMBL
Match: A0A6J1JBX4 (protein YLS3-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484364 PE=4 SV=1) HSP 1 Score: 363 bits (932), Expect = 8.67e-127 Identity = 178/185 (96.22%), Postives = 182/185 (98.38%), Query Frame = 0
BLAST of Cp4.1LG16g09240 vs. ExPASy TrEMBL
Match: A0A6J1FVR4 (protein YLS3-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448546 PE=4 SV=1) HSP 1 Score: 358 bits (919), Expect = 8.32e-125 Identity = 177/185 (95.68%), Postives = 180/185 (97.30%), Query Frame = 0
BLAST of Cp4.1LG16g09240 vs. ExPASy TrEMBL
Match: A0A6J1J894 (protein YLS3-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111484364 PE=4 SV=1) HSP 1 Score: 355 bits (911), Expect = 1.29e-123 Identity = 176/185 (95.14%), Postives = 180/185 (97.30%), Query Frame = 0
BLAST of Cp4.1LG16g09240 vs. ExPASy TrEMBL
Match: A0A6J1FYE4 (protein YLS3-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448546 PE=4 SV=1) HSP 1 Score: 353 bits (905), Expect = 1.06e-122 Identity = 176/185 (95.14%), Postives = 179/185 (96.76%), Query Frame = 0
BLAST of Cp4.1LG16g09240 vs. ExPASy TrEMBL
Match: A0A0A0KZ48 (AAI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G280560 PE=4 SV=1) HSP 1 Score: 266 bits (679), Expect = 3.11e-88 Identity = 134/174 (77.01%), Postives = 151/174 (86.78%), Query Frame = 0
BLAST of Cp4.1LG16g09240 vs. TAIR 10
Match: AT2G44300.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein ) HSP 1 Score: 161.0 bits (406), Expect = 9.2e-40 Identity = 87/197 (44.16%), Postives = 121/197 (61.42%), Query Frame = 0
BLAST of Cp4.1LG16g09240 vs. TAIR 10
Match: AT1G55260.2 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein ) HSP 1 Score: 157.5 bits (397), Expect = 1.0e-38 Identity = 79/175 (45.14%), Postives = 113/175 (64.57%), Query Frame = 0
BLAST of Cp4.1LG16g09240 vs. TAIR 10
Match: AT1G55260.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein ) HSP 1 Score: 154.8 bits (390), Expect = 6.6e-38 Identity = 79/178 (44.38%), Postives = 112/178 (62.92%), Query Frame = 0
BLAST of Cp4.1LG16g09240 vs. TAIR 10
Match: AT2G44290.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein ) HSP 1 Score: 149.1 bits (375), Expect = 3.6e-36 Identity = 85/206 (41.26%), Postives = 118/206 (57.28%), Query Frame = 0
BLAST of Cp4.1LG16g09240 vs. TAIR 10
Match: AT3G58550.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein ) HSP 1 Score: 108.6 bits (270), Expect = 5.4e-24 Identity = 61/156 (39.10%), Postives = 88/156 (56.41%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|