Cp4.1LG15g07100 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG15g07100
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionPentatricopeptide repeat-containing protein
LocationCp4.1LG15: 7486347 .. 7487239 (-)
RNA-Seq ExpressionCp4.1LG15g07100
SyntenyCp4.1LG15g07100
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGCGTCTCTTGCACTGTCACACTCCCTCCAGCCATTTCTCCCTTGCAACCTTCATTTTCCTCTTCAAAGCTGCGAAACTGAACGAGAAGCGAAGCAATTCCACGCTCTCTCGCTTAAAACAGGCTCATTGAATCACCCTTCGATATCTCCTCGTCTTTTGGCTCTCTATGCAAATCCCAGAATCAACAATCTCGAATATGCTCAGTCCCTCTTTGACTGGATTCGAAAACCCACTTTGGTTTCTTGGAATATGCTCATCAAGTGCTACATTGAGAATCAACGTTCAAATGATGCCATTGCGTTGTTCTGCAAATTGCTCTGTGAGTTTATGCCTGATTCTTTTACATTGCCTTGTGTTCTAAAGGGTTGTGCTCGATTGAGTGCACTACAGGAAGGGAAACAGATTCATGGGTTGATAGTGAAAATTGGGATTGGTGTGGATAAGTTTGTTTTGAGTAGTTTGGTTAATATGTATTCTAAATGTGGTGAGATTGAGCTGTGTAGGAAAGTGTTCGATCGAATGGAAGATAAGGATGTAGTATCATGGAATTCTTTGATTGATGGGTATGCTAGATGTGGTGAAATTGAACTTGCACTGGAGTTGTTTGATGAAATGCCTGAGAAGGATAATTTCTCATGGACTATTCTGGTTGATGGGCTTTCTAAAAGTGGGAAGCTCAAGGCTGCTAGAGACGTGTTCGATCGAATGCCTACTCGAAATTCTGTATCTTGGAATGCTATGATTAATGGCTACATGAAAGCTGGGAAGTTTAACATGGCACGAGAATTATTCGATCGGATGCCAGAGAGAAACCACGTTTCATGGAATTCAATGATCACTGGATATGAGCTGAACAAGCAGTTCATTCAAGCCTTGAAGCTGTTTGA

mRNA sequence

ATGATGGCGTCTCTTGCACTGTCACACTCCCTCCAGCCATTTCTCCCTTGCAACCTTCATTTTCCTCTTCAAAGCTGCGAAACTGAACGAGAAGCGAAGCAATTCCACGCTCTCTCGCTTAAAACAGGCTCATTGAATCACCCTTCGATATCTCCTCGTCTTTTGGCTCTCTATGCAAATCCCAGAATCAACAATCTCGAATATGCTCAGTCCCTCTTTGACTGGATTCGAAAACCCACTTTGGTTTCTTGGAATATGCTCATCAAGTGCTACATTGAGAATCAACGTTCAAATGATGCCATTGCGTTGTTCTGCAAATTGCTCTGTGAGTTTATGCCTGATTCTTTTACATTGCCTTGTGTTCTAAAGGGTTGTGCTCGATTGAGTGCACTACAGGAAGGGAAACAGATTCATGGGTTGATAGTGAAAATTGGGATTGGTGTGGATAAGTTTGTTTTGAGTAGTTTGGTTAATATGTATTCTAAATGTGTTCATTCAAGCCTTGAAGCTGTTTGA

Coding sequence (CDS)

ATGATGGCGTCTCTTGCACTGTCACACTCCCTCCAGCCATTTCTCCCTTGCAACCTTCATTTTCCTCTTCAAAGCTGCGAAACTGAACGAGAAGCGAAGCAATTCCACGCTCTCTCGCTTAAAACAGGCTCATTGAATCACCCTTCGATATCTCCTCGTCTTTTGGCTCTCTATGCAAATCCCAGAATCAACAATCTCGAATATGCTCAGTCCCTCTTTGACTGGATTCGAAAACCCACTTTGGTTTCTTGGAATATGCTCATCAAGTGCTACATTGAGAATCAACGTTCAAATGATGCCATTGCGTTGTTCTGCAAATTGCTCTGTGAGTTTATGCCTGATTCTTTTACATTGCCTTGTGTTCTAAAGGGTTGTGCTCGATTGAGTGCACTACAGGAAGGGAAACAGATTCATGGGTTGATAGTGAAAATTGGGATTGGTGTGGATAAGTTTGTTTTGAGTAGTTTGGTTAATATGTATTCTAAATGTGTTCATTCAAGCCTTGAAGCTGTTTGA

Protein sequence

MMASLALSHSLQPFLPCNLHFPLQSCETEREAKQFHALSLKTGSLNHPSISPRLLALYANPRINNLEYAQSLFDWIRKPTLVSWNMLIKCYIENQRSNDAIALFCKLLCEFMPDSFTLPCVLKGCARLSALQEGKQIHGLIVKIGIGVDKFVLSSLVNMYSKCVHSSLEAV
Homology
BLAST of Cp4.1LG15g07100 vs. ExPASy Swiss-Prot
Match: Q9FI80 (Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H38 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.3e-21
Identity = 57/154 (37.01%), Postives = 90/154 (58.44%), Query Frame = 0

Query: 16  PCNLHFPLQSCETEREAKQFHALSLKTGSLNHPSISPRLLALYANPRIN--NLEYAQSLF 75
           P +L   + +C T R+  Q HA+ +K+G +     +  +L   A   ++  +L+YA  +F
Sbjct: 23  PSSLFPQINNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIF 82

Query: 76  DWIRKPTLVSWNMLIKCYIENQRSND--AIALFCKLLC-EFM-PDSFTLPCVLKGCARLS 135
           + + +    SWN +I+ + E+       AI LF +++  EF+ P+ FT P VLK CA+  
Sbjct: 83  NQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTG 142

Query: 136 ALQEGKQIHGLIVKIGIGVDKFVLSSLVNMYSKC 164
            +QEGKQIHGL +K G G D+FV+S+LV MY  C
Sbjct: 143 KIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMC 176

BLAST of Cp4.1LG15g07100 vs. ExPASy Swiss-Prot
Match: Q9C6T2 (Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H11 PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 8.0e-19
Identity = 54/151 (35.76%), Postives = 83/151 (54.97%), Query Frame = 0

Query: 23  LQSCETEREAKQFHALSLKTGSLNHPSIS-PRLLALYANPR-INNLEYAQSLFDWIRKPT 82
           L+ C    E KQ HA  +K       S S   +LA  A+    N++ YA S+F  I  P 
Sbjct: 37  LKRCHNIDEFKQVHARFIKLSLFYSSSFSASSVLAKCAHSGWENSMNYAASIFRGIDDPC 96

Query: 83  LVSWNMLIKCYIENQRSNDAIALFCKLLCE-FMPDSFTLPCVLKGCARLSALQEGKQIHG 142
              +N +I+ Y+      +A+  + +++     PD+FT PC+LK C RL +++EGKQIHG
Sbjct: 97  TFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQIHG 156

Query: 143 LIVKIGIGVDKFVLSSLVNMYSKCVHSSLEA 171
            + K+G+  D FV +SL+NMY +C    L +
Sbjct: 157 QVFKLGLEADVFVQNSLINMYGRCGEMELSS 187

BLAST of Cp4.1LG15g07100 vs. ExPASy Swiss-Prot
Match: O82380 (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-18
Identity = 48/143 (33.57%), Postives = 80/143 (55.94%), Query Frame = 0

Query: 23  LQSCETEREAKQFHALSLKTGSLNHPSISPRLLALYANPRINNLEYAQSLFDWIRKPTLV 82
           ++ C + R+ KQ H   ++TG+ + P  + +L A+ A     +LEYA+ +FD I KP   
Sbjct: 37  IERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSF 96

Query: 83  SWNMLIKCYIENQRSNDAIALFCKLLCEFM--PDSFTLPCVLKGCARLSALQEGKQIHGL 142
           +WN LI+ Y        +I  F  ++ E    P+ +T P ++K  A +S+L  G+ +HG+
Sbjct: 97  AWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGM 156

Query: 143 IVKIGIGVDKFVLSSLVNMYSKC 164
            VK  +G D FV +SL++ Y  C
Sbjct: 157 AVKSAVGSDVFVANSLIHCYFSC 179

BLAST of Cp4.1LG15g07100 vs. ExPASy Swiss-Prot
Match: Q9SUH6 (Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana OX=3702 GN=DYW9 PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 5.2e-18
Identity = 48/129 (37.21%), Postives = 76/129 (58.91%), Query Frame = 0

Query: 36  HALSLKTGSLNHPSISPRLLALYANPRINNLEYAQSLFDWIRKPTLVSWNMLIKCYIENQ 95
           H   LK+  L+H S+S  L  +Y+  ++N +E A+ LFD   + +L SWN +I  Y +N 
Sbjct: 342 HGYCLKSNFLSHASVSTALTTVYS--KLNEIESARKLFDESPEKSLPSWNAMISGYTQNG 401

Query: 96  RSNDAIALFCKL-LCEFMPDSFTLPCVLKGCARLSALQEGKQIHGLIVKIGIGVDKFVLS 155
            + DAI+LF ++   EF P+  T+ C+L  CA+L AL  GK +H L+         +V +
Sbjct: 402 LTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVST 461

Query: 156 SLVNMYSKC 164
           +L+ MY+KC
Sbjct: 462 ALIGMYAKC 468

BLAST of Cp4.1LG15g07100 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.4e-17
Identity = 47/140 (33.57%), Postives = 82/140 (58.57%), Query Frame = 0

Query: 23  LQSCETEREAKQFHALSLKTGSLN-HPSISPRLLALYANPRINNLEYAQSLFDWIRKPTL 82
           L +C+T +  +  HA  +K G  N + ++S  +     +P    L YA S+F  I++P L
Sbjct: 40  LHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNL 99

Query: 83  VSWNMLIKCYIENQRSNDAIALF-CKLLCEFMPDSFTLPCVLKGCARLSALQEGKQIHGL 142
           + WN + + +  +     A+ L+ C +    +P+S+T P VLK CA+  A +EG+QIHG 
Sbjct: 100 LIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGH 159

Query: 143 IVKIGIGVDKFVLSSLVNMY 161
           ++K+G  +D +V +SL++MY
Sbjct: 160 VLKLGCDLDLYVHTSLISMY 179

BLAST of Cp4.1LG15g07100 vs. NCBI nr
Match: XP_023554422.1 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 334 bits (857), Expect = 1.37e-108
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0

Query: 1   MMASLALSHSLQPFLPCNLHFPLQSCETEREAKQFHALSLKTGSLNHPSISPRLLALYAN 60
           MMASLALSHSLQPFLPCNLHFPLQSCETEREAKQFHALSLKTGSLNHPSISPRLLALYAN
Sbjct: 1   MMASLALSHSLQPFLPCNLHFPLQSCETEREAKQFHALSLKTGSLNHPSISPRLLALYAN 60

Query: 61  PRINNLEYAQSLFDWIRKPTLVSWNMLIKCYIENQRSNDAIALFCKLLCEFMPDSFTLPC 120
           PRINNLEYAQSLFDWIRKPTLVSWNMLIKCYIENQRSNDAIALFCKLLCEFMPDSFTLPC
Sbjct: 61  PRINNLEYAQSLFDWIRKPTLVSWNMLIKCYIENQRSNDAIALFCKLLCEFMPDSFTLPC 120

Query: 121 VLKGCARLSALQEGKQIHGLIVKIGIGVDKFVLSSLVNMYSKC 163
           VLKGCARLSALQEGKQIHGLIVKIGIGVDKFVLSSLVNMYSKC
Sbjct: 121 VLKGCARLSALQEGKQIHGLIVKIGIGVDKFVLSSLVNMYSKC 163

BLAST of Cp4.1LG15g07100 vs. NCBI nr
Match: KAG7011869.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 328 bits (840), Expect = 4.80e-106
Identity = 158/163 (96.93%), Postives = 161/163 (98.77%), Query Frame = 0

Query: 1   MMASLALSHSLQPFLPCNLHFPLQSCETEREAKQFHALSLKTGSLNHPSISPRLLALYAN 60
           MMASL LSHSLQPFLPCNLHFPLQ+CETEREAKQFHALSLKTGSLNHPSISPRLLALYAN
Sbjct: 1   MMASLTLSHSLQPFLPCNLHFPLQNCETEREAKQFHALSLKTGSLNHPSISPRLLALYAN 60

Query: 61  PRINNLEYAQSLFDWIRKPTLVSWNMLIKCYIENQRSNDAIALFCKLLCEFMPDSFTLPC 120
           PRINNLEY QSLFDWIRKPTLVSWNMLIKCYIENQRSNDAIALFCKLLCEFMPDSFTLPC
Sbjct: 61  PRINNLEYVQSLFDWIRKPTLVSWNMLIKCYIENQRSNDAIALFCKLLCEFMPDSFTLPC 120

Query: 121 VLKGCARLSALQEGKQIHGLIVKIGIGVDKFVLSSLVNMYSKC 163
           VLKGCARLSALQEGKQIHGLI+KIGIG+DKFVLSSLVNMYSKC
Sbjct: 121 VLKGCARLSALQEGKQIHGLILKIGIGMDKFVLSSLVNMYSKC 163

BLAST of Cp4.1LG15g07100 vs. NCBI nr
Match: XP_022953072.1 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like [Cucurbita moschata] >XP_022953073.1 pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 322 bits (826), Expect = 5.95e-104
Identity = 157/163 (96.32%), Postives = 159/163 (97.55%), Query Frame = 0

Query: 1   MMASLALSHSLQPFLPCNLHFPLQSCETEREAKQFHALSLKTGSLNHPSISPRLLALYAN 60
           MM SL LSHSLQPF P NLHFPLQ+CETEREAKQFHALSLKTGSLNHPSISPRLLALYAN
Sbjct: 1   MMPSLTLSHSLQPFFPGNLHFPLQNCETEREAKQFHALSLKTGSLNHPSISPRLLALYAN 60

Query: 61  PRINNLEYAQSLFDWIRKPTLVSWNMLIKCYIENQRSNDAIALFCKLLCEFMPDSFTLPC 120
           PRINNLEYAQSLFDWIRKPTLVSWNMLIKCYIENQRSNDAIALFCKLLCEFMPDSFTLPC
Sbjct: 61  PRINNLEYAQSLFDWIRKPTLVSWNMLIKCYIENQRSNDAIALFCKLLCEFMPDSFTLPC 120

Query: 121 VLKGCARLSALQEGKQIHGLIVKIGIGVDKFVLSSLVNMYSKC 163
           VLKGCARLSALQEGKQIHGLI+KIGIGVDKFVLSSLVNMYSKC
Sbjct: 121 VLKGCARLSALQEGKQIHGLILKIGIGVDKFVLSSLVNMYSKC 163

BLAST of Cp4.1LG15g07100 vs. NCBI nr
Match: KAG6572234.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 321 bits (822), Expect = 2.36e-103
Identity = 156/163 (95.71%), Postives = 158/163 (96.93%), Query Frame = 0

Query: 1   MMASLALSHSLQPFLPCNLHFPLQSCETEREAKQFHALSLKTGSLNHPSISPRLLALYAN 60
           MM SL LSHSLQPF P NLHFPLQ+CETEREAKQFHALSLKTGSLNHPSISPRLLALYAN
Sbjct: 1   MMPSLTLSHSLQPFFPGNLHFPLQNCETEREAKQFHALSLKTGSLNHPSISPRLLALYAN 60

Query: 61  PRINNLEYAQSLFDWIRKPTLVSWNMLIKCYIENQRSNDAIALFCKLLCEFMPDSFTLPC 120
           PRINNLEY QSLFDWIRKPTLVSWNMLIKCYIENQRSNDAIALFCKLLCEFMPDSFTLPC
Sbjct: 61  PRINNLEYVQSLFDWIRKPTLVSWNMLIKCYIENQRSNDAIALFCKLLCEFMPDSFTLPC 120

Query: 121 VLKGCARLSALQEGKQIHGLIVKIGIGVDKFVLSSLVNMYSKC 163
           VLKGCARLSALQEGKQIHGLI+KIGIGVDKFVLSSLVNMYSKC
Sbjct: 121 VLKGCARLSALQEGKQIHGLILKIGIGVDKFVLSSLVNMYSKC 163

BLAST of Cp4.1LG15g07100 vs. NCBI nr
Match: XP_022969015.1 (pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 317 bits (813), Expect = 5.22e-102
Identity = 155/163 (95.09%), Postives = 158/163 (96.93%), Query Frame = 0

Query: 1   MMASLALSHSLQPFLPCNLHFPLQSCETEREAKQFHALSLKTGSLNHPSISPRLLALYAN 60
           MM SL LSHSL PFLPCNLHFPLQ+CETEREAKQFHALS+KTGSLN PSIS RLLALYAN
Sbjct: 1   MMPSLTLSHSLLPFLPCNLHFPLQNCETEREAKQFHALSVKTGSLNDPSISLRLLALYAN 60

Query: 61  PRINNLEYAQSLFDWIRKPTLVSWNMLIKCYIENQRSNDAIALFCKLLCEFMPDSFTLPC 120
           PRINNLEYAQSLFDWIRKPTLVSWNMLIKCYIENQRSNDAIALFCKLLCEFMPDSFTLPC
Sbjct: 61  PRINNLEYAQSLFDWIRKPTLVSWNMLIKCYIENQRSNDAIALFCKLLCEFMPDSFTLPC 120

Query: 121 VLKGCARLSALQEGKQIHGLIVKIGIGVDKFVLSSLVNMYSKC 163
           VLKGCARLSALQEGKQIHGLI+KIGIGVDKFVLSSLVNMYSKC
Sbjct: 121 VLKGCARLSALQEGKQIHGLILKIGIGVDKFVLSSLVNMYSKC 163

BLAST of Cp4.1LG15g07100 vs. ExPASy TrEMBL
Match: A0A6J1GM70 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111455587 PE=3 SV=1)

HSP 1 Score: 322 bits (826), Expect = 2.88e-104
Identity = 157/163 (96.32%), Postives = 159/163 (97.55%), Query Frame = 0

Query: 1   MMASLALSHSLQPFLPCNLHFPLQSCETEREAKQFHALSLKTGSLNHPSISPRLLALYAN 60
           MM SL LSHSLQPF P NLHFPLQ+CETEREAKQFHALSLKTGSLNHPSISPRLLALYAN
Sbjct: 1   MMPSLTLSHSLQPFFPGNLHFPLQNCETEREAKQFHALSLKTGSLNHPSISPRLLALYAN 60

Query: 61  PRINNLEYAQSLFDWIRKPTLVSWNMLIKCYIENQRSNDAIALFCKLLCEFMPDSFTLPC 120
           PRINNLEYAQSLFDWIRKPTLVSWNMLIKCYIENQRSNDAIALFCKLLCEFMPDSFTLPC
Sbjct: 61  PRINNLEYAQSLFDWIRKPTLVSWNMLIKCYIENQRSNDAIALFCKLLCEFMPDSFTLPC 120

Query: 121 VLKGCARLSALQEGKQIHGLIVKIGIGVDKFVLSSLVNMYSKC 163
           VLKGCARLSALQEGKQIHGLI+KIGIGVDKFVLSSLVNMYSKC
Sbjct: 121 VLKGCARLSALQEGKQIHGLILKIGIGVDKFVLSSLVNMYSKC 163

BLAST of Cp4.1LG15g07100 vs. ExPASy TrEMBL
Match: A0A6J1HYS6 (pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111468139 PE=3 SV=1)

HSP 1 Score: 317 bits (813), Expect = 2.53e-102
Identity = 155/163 (95.09%), Postives = 158/163 (96.93%), Query Frame = 0

Query: 1   MMASLALSHSLQPFLPCNLHFPLQSCETEREAKQFHALSLKTGSLNHPSISPRLLALYAN 60
           MM SL LSHSL PFLPCNLHFPLQ+CETEREAKQFHALS+KTGSLN PSIS RLLALYAN
Sbjct: 1   MMPSLTLSHSLLPFLPCNLHFPLQNCETEREAKQFHALSVKTGSLNDPSISLRLLALYAN 60

Query: 61  PRINNLEYAQSLFDWIRKPTLVSWNMLIKCYIENQRSNDAIALFCKLLCEFMPDSFTLPC 120
           PRINNLEYAQSLFDWIRKPTLVSWNMLIKCYIENQRSNDAIALFCKLLCEFMPDSFTLPC
Sbjct: 61  PRINNLEYAQSLFDWIRKPTLVSWNMLIKCYIENQRSNDAIALFCKLLCEFMPDSFTLPC 120

Query: 121 VLKGCARLSALQEGKQIHGLIVKIGIGVDKFVLSSLVNMYSKC 163
           VLKGCARLSALQEGKQIHGLI+KIGIGVDKFVLSSLVNMYSKC
Sbjct: 121 VLKGCARLSALQEGKQIHGLILKIGIGVDKFVLSSLVNMYSKC 163

BLAST of Cp4.1LG15g07100 vs. ExPASy TrEMBL
Match: A0A5D3D6Y7 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold295G00490 PE=3 SV=1)

HSP 1 Score: 292 bits (748), Expect = 1.21e-92
Identity = 139/162 (85.80%), Postives = 150/162 (92.59%), Query Frame = 0

Query: 2   MASLALSHSLQPFLPCNLHFPLQSCETEREAKQFHALSLKTGSLNHPSISPRLLALYANP 61
           M SL LSHSLQPFLP NLHFPLQ+C TEREA Q HALS+KT SLNHPS+S  LLALYA+P
Sbjct: 1   MLSLTLSHSLQPFLPPNLHFPLQNCRTEREANQLHALSIKTASLNHPSVSSPLLALYAHP 60

Query: 62  RINNLEYAQSLFDWIRKPTLVSWNMLIKCYIENQRSNDAIALFCKLLCEFMPDSFTLPCV 121
            INNL+YAQSLFDWI+KPTLVSWN+LIKCYIENQRSNDAIALFCKLLC+FMPDSFTLPCV
Sbjct: 61  TINNLQYAQSLFDWIQKPTLVSWNLLIKCYIENQRSNDAIALFCKLLCDFMPDSFTLPCV 120

Query: 122 LKGCARLSALQEGKQIHGLIVKIGIGVDKFVLSSLVNMYSKC 163
           LKGCARL ALQEGKQIHGL++KIG GVDKFVLSSLV+MYSKC
Sbjct: 121 LKGCARLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKC 162

BLAST of Cp4.1LG15g07100 vs. ExPASy TrEMBL
Match: A0A5A7V0C2 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001180 PE=3 SV=1)

HSP 1 Score: 292 bits (748), Expect = 1.21e-92
Identity = 139/162 (85.80%), Postives = 150/162 (92.59%), Query Frame = 0

Query: 2   MASLALSHSLQPFLPCNLHFPLQSCETEREAKQFHALSLKTGSLNHPSISPRLLALYANP 61
           M SL LSHSLQPFLP NLHFPLQ+C TEREA Q HALS+KT SLNHPS+S  LLALYA+P
Sbjct: 1   MLSLTLSHSLQPFLPPNLHFPLQNCRTEREANQLHALSIKTASLNHPSVSSPLLALYAHP 60

Query: 62  RINNLEYAQSLFDWIRKPTLVSWNMLIKCYIENQRSNDAIALFCKLLCEFMPDSFTLPCV 121
            INNL+YAQSLFDWI+KPTLVSWN+LIKCYIENQRSNDAIALFCKLLC+FMPDSFTLPCV
Sbjct: 61  TINNLQYAQSLFDWIQKPTLVSWNLLIKCYIENQRSNDAIALFCKLLCDFMPDSFTLPCV 120

Query: 122 LKGCARLSALQEGKQIHGLIVKIGIGVDKFVLSSLVNMYSKC 163
           LKGCARL ALQEGKQIHGL++KIG GVDKFVLSSLV+MYSKC
Sbjct: 121 LKGCARLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKC 162

BLAST of Cp4.1LG15g07100 vs. ExPASy TrEMBL
Match: A0A1S3CG66 (pentatricopeptide repeat-containing protein At5g48910-like OS=Cucumis melo OX=3656 GN=LOC103500522 PE=3 SV=1)

HSP 1 Score: 292 bits (748), Expect = 1.21e-92
Identity = 139/162 (85.80%), Postives = 150/162 (92.59%), Query Frame = 0

Query: 2   MASLALSHSLQPFLPCNLHFPLQSCETEREAKQFHALSLKTGSLNHPSISPRLLALYANP 61
           M SL LSHSLQPFLP NLHFPLQ+C TEREA Q HALS+KT SLNHPS+S  LLALYA+P
Sbjct: 1   MLSLTLSHSLQPFLPPNLHFPLQNCRTEREANQLHALSIKTASLNHPSVSSPLLALYAHP 60

Query: 62  RINNLEYAQSLFDWIRKPTLVSWNMLIKCYIENQRSNDAIALFCKLLCEFMPDSFTLPCV 121
            INNL+YAQSLFDWI+KPTLVSWN+LIKCYIENQRSNDAIALFCKLLC+FMPDSFTLPCV
Sbjct: 61  TINNLQYAQSLFDWIQKPTLVSWNLLIKCYIENQRSNDAIALFCKLLCDFMPDSFTLPCV 120

Query: 122 LKGCARLSALQEGKQIHGLIVKIGIGVDKFVLSSLVNMYSKC 163
           LKGCARL ALQEGKQIHGL++KIG GVDKFVLSSLV+MYSKC
Sbjct: 121 LKGCARLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKC 162

BLAST of Cp4.1LG15g07100 vs. TAIR 10
Match: AT5G48910.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 103.6 bits (257), Expect = 1.6e-22
Identity = 57/154 (37.01%), Postives = 90/154 (58.44%), Query Frame = 0

Query: 16  PCNLHFPLQSCETEREAKQFHALSLKTGSLNHPSISPRLLALYANPRIN--NLEYAQSLF 75
           P +L   + +C T R+  Q HA+ +K+G +     +  +L   A   ++  +L+YA  +F
Sbjct: 23  PSSLFPQINNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIF 82

Query: 76  DWIRKPTLVSWNMLIKCYIENQRSND--AIALFCKLLC-EFM-PDSFTLPCVLKGCARLS 135
           + + +    SWN +I+ + E+       AI LF +++  EF+ P+ FT P VLK CA+  
Sbjct: 83  NQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTG 142

Query: 136 ALQEGKQIHGLIVKIGIGVDKFVLSSLVNMYSKC 164
            +QEGKQIHGL +K G G D+FV+S+LV MY  C
Sbjct: 143 KIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMC 176

BLAST of Cp4.1LG15g07100 vs. TAIR 10
Match: AT1G31920.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 95.1 bits (235), Expect = 5.7e-20
Identity = 54/151 (35.76%), Postives = 83/151 (54.97%), Query Frame = 0

Query: 23  LQSCETEREAKQFHALSLKTGSLNHPSIS-PRLLALYANPR-INNLEYAQSLFDWIRKPT 82
           L+ C    E KQ HA  +K       S S   +LA  A+    N++ YA S+F  I  P 
Sbjct: 37  LKRCHNIDEFKQVHARFIKLSLFYSSSFSASSVLAKCAHSGWENSMNYAASIFRGIDDPC 96

Query: 83  LVSWNMLIKCYIENQRSNDAIALFCKLLCE-FMPDSFTLPCVLKGCARLSALQEGKQIHG 142
              +N +I+ Y+      +A+  + +++     PD+FT PC+LK C RL +++EGKQIHG
Sbjct: 97  TFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQIHG 156

Query: 143 LIVKIGIGVDKFVLSSLVNMYSKCVHSSLEA 171
            + K+G+  D FV +SL+NMY +C    L +
Sbjct: 157 QVFKLGLEADVFVQNSLINMYGRCGEMELSS 187

BLAST of Cp4.1LG15g07100 vs. TAIR 10
Match: AT2G29760.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 94.7 bits (234), Expect = 7.5e-20
Identity = 48/143 (33.57%), Postives = 80/143 (55.94%), Query Frame = 0

Query: 23  LQSCETEREAKQFHALSLKTGSLNHPSISPRLLALYANPRINNLEYAQSLFDWIRKPTLV 82
           ++ C + R+ KQ H   ++TG+ + P  + +L A+ A     +LEYA+ +FD I KP   
Sbjct: 37  IERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSF 96

Query: 83  SWNMLIKCYIENQRSNDAIALFCKLLCEFM--PDSFTLPCVLKGCARLSALQEGKQIHGL 142
           +WN LI+ Y        +I  F  ++ E    P+ +T P ++K  A +S+L  G+ +HG+
Sbjct: 97  AWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGM 156

Query: 143 IVKIGIGVDKFVLSSLVNMYSKC 164
            VK  +G D FV +SL++ Y  C
Sbjct: 157 AVKSAVGSDVFVANSLIHCYFSC 179

BLAST of Cp4.1LG15g07100 vs. TAIR 10
Match: AT4G30700.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 92.4 bits (228), Expect = 3.7e-19
Identity = 48/129 (37.21%), Postives = 76/129 (58.91%), Query Frame = 0

Query: 36  HALSLKTGSLNHPSISPRLLALYANPRINNLEYAQSLFDWIRKPTLVSWNMLIKCYIENQ 95
           H   LK+  L+H S+S  L  +Y+  ++N +E A+ LFD   + +L SWN +I  Y +N 
Sbjct: 342 HGYCLKSNFLSHASVSTALTTVYS--KLNEIESARKLFDESPEKSLPSWNAMISGYTQNG 401

Query: 96  RSNDAIALFCKL-LCEFMPDSFTLPCVLKGCARLSALQEGKQIHGLIVKIGIGVDKFVLS 155
            + DAI+LF ++   EF P+  T+ C+L  CA+L AL  GK +H L+         +V +
Sbjct: 402 LTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVST 461

Query: 156 SLVNMYSKC 164
           +L+ MY+KC
Sbjct: 462 ALIGMYAKC 468

BLAST of Cp4.1LG15g07100 vs. TAIR 10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 89.7 bits (221), Expect = 2.4e-18
Identity = 47/140 (33.57%), Postives = 82/140 (58.57%), Query Frame = 0

Query: 23  LQSCETEREAKQFHALSLKTGSLN-HPSISPRLLALYANPRINNLEYAQSLFDWIRKPTL 82
           L +C+T +  +  HA  +K G  N + ++S  +     +P    L YA S+F  I++P L
Sbjct: 40  LHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNL 99

Query: 83  VSWNMLIKCYIENQRSNDAIALF-CKLLCEFMPDSFTLPCVLKGCARLSALQEGKQIHGL 142
           + WN + + +  +     A+ L+ C +    +P+S+T P VLK CA+  A +EG+QIHG 
Sbjct: 100 LIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGH 159

Query: 143 IVKIGIGVDKFVLSSLVNMY 161
           ++K+G  +D +V +SL++MY
Sbjct: 160 VLKLGCDLDLYVHTSLISMY 179

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9FI802.3e-2137.01Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana OX... [more]
Q9C6T28.0e-1935.76Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana OX... [more]
O823801.1e-1833.57Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidop... [more]
Q9SUH65.2e-1837.21Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana OX... [more]
Q9LN013.4e-1733.57Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop... [more]
Match NameE-valueIdentityDescription
XP_023554422.11.37e-108100.00pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like [Cucur... [more]
KAG7011869.14.80e-10696.93Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a... [more]
XP_022953072.15.95e-10496.32pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like [Cucur... [more]
KAG6572234.12.36e-10395.71Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a... [more]
XP_022969015.15.22e-10295.09pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Cucur... [more]
Match NameE-valueIdentityDescription
A0A6J1GM702.88e-10496.32pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like OS=Cuc... [more]
A0A6J1HYS62.53e-10295.09pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like OS=Cuc... [more]
A0A5D3D6Y71.21e-9285.80Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A5A7V0C21.21e-9285.80Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3CG661.21e-9285.80pentatricopeptide repeat-containing protein At5g48910-like OS=Cucumis melo OX=36... [more]
Match NameE-valueIdentityDescription
AT5G48910.11.6e-2237.01Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G31920.15.7e-2035.76Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT2G29760.17.5e-2033.57Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT4G30700.13.7e-1937.21Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G08070.12.4e-1833.57Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 25..169
e-value: 1.8E-18
score: 68.5
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 82..108
e-value: 2.0E-4
score: 19.3
NoneNo IPR availablePANTHERPTHR47925:SF61PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN DOT4, CHLOROPLASTICcoord: 15..163
NoneNo IPR availablePANTHERPTHR47925OS01G0913400 PROTEIN-RELATEDcoord: 15..163

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g07100.1Cp4.1LG15g07100.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding