Cp4.1LG15g00130 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAGTAAGAGTTGGTGAGGTAAGGAGAGTGATTTTGGGAAGTGGGACAAACGTGAGGAGAAGCAACAAAACGAAGAAGATGAGAAGAAAAAGCATTGCCTGTGTAGCAGTGCTTACAAGAGCAGCAGAGAGTGGAGCAACAGAAGAAACAAGAAAACCAAACACTGTTTATGCAGACAACTGGTTTGAGAAAATAGCCATCCACCATGTATCTCAGGCAGTACAAGCAACCTCAGGTGATCTCTTTTCTTTTCTGTTTTGAAGATTTGGACAATAGAATTACTTATGATGTATATTCAGGTTGGAGAAGCAAGAAGAGTGGATATGAAAGCTTGGTGGAAGTGGCAACAATGGCGTCAAGAAACTACAATCAGATCAAACAAAGAGAGGTTATCATTCAGGCGCTTGGAAGAGCATTTCCAGCTCCAATCCTCTCTTTGGTAAATTTCATTCATTCAATATCATTTACTATTCTTTTGACTTTCAATGTATTTATGATATAAATGCATATCATGCATATATGTAAAATACTATCACCAAACATATCGTTGAAGATTTTACCAATACCAATTTCAATTCTACCATCATTTTACTCTCACCACTCCCTCAAATATTATTGCTAAAAGTAATTTCAAAAGTCATATCTTTATTTTTCTAGGCGGCTCTAAGTTATTTATTTACCTATGATATTAGGTGATAAAAGCAATAAATGTTTCCACATCAATAGAAGTTCATTATTAAATAACATTTGTAAGGTAAGTGGTGCATGATCATTTGATGAATTTCATTTAGGCCAAATTTCAATACTTTGTCTTCCTTATTTGGTCTCCCTTCTTCTTCCCATTTGTTTGTTTAAGTATTGACATAGTTAAGTTTTTTACCATAACCTATAAGCTAAAACTTTTAAGTTGATTGTGGTATCAGAGCATGAGGTTATGTGTCCTGTGTTTGCACCCTATAATATAATCTTCTGATTTTCTGCTTTCCAACTTAAATTCGTAGGATTCAACACATTTTGGGGGATATAGCTAGGTTTCATTGCCTAGGTTAGAACCTACCTAGAACTATACCCTTTTCTAATTTTTCTTTCCATTAATCATGGGGTATAATAGTTATTTGATTGGCATGTCATTATATGGAAATAGTATCAGCAAATGATCACATTTTATATTATATTTCTAATTATCAGCAATTATTCGATTAAAGAAGTATTAAAACTGTACTTTTACTATTCTTGATCCATTTCCAATTTCGCCTTTTACTATTAAAACCCCACCCCTCTCAATCGTATGTCCCTAACAAATATAGTGGTGAACAAAGTGCAGATAAGAACATTGCTACCTCAATCCAAATTCGCAAGGGAATATTTTGCTGCATTCACCACTGTCTTCTTTGCTTGGTTAGTTGGACCCTGCGAGGTAAGATGTTGTAAATAAATTTAGCCAAGGACATAATTGGGAATTAACATCAATCCATGGACATAATTGGGAATTAACGGCTGCTTGTATACATGTACATTTGGTTAAAGCATATATTATCGACCAAAAAGTCAAAAGTTCGAATTCCTACTCCAAAGAGAGATGGTTCTGTCATAGGGCTTAGGATCGGTGTCAAAAAAAAATTCAGAATATAGAGTATTTAAACATTCAACAAACAAGGTCAGAATAGAGATAGATTCCAGCTAATGGTGGACACAAGAACTTCAACTTTAGCACTAAATTCAATATAATAATATGATTTTCAATGGCCAAGTTGATAAACCTGCAGTGTTTGAGGCACTAGTCCCTTCTAGACTTGTCCTGTCCCTACAAATGAAAGAAAGGTTTTGTGACGTAAGATAGATAAAACTATTTTTTAAGAAACTATCTTCTCTTCATGCTTACTCTCTTTGGCCTTTCACTTTCTAGGCATTCCTTAAGAACTCAGATTAAACACAATTGATATGTCTAGTTTGTTGGGGAGGGAGTGATTGAAAAAGATTTTTAAGCAAAACAACTAAACAATGCAGGAGCCATTCCCTACGCACACACAAATGGAAGAAGCAAGTCTCCTTCTCAATTACTAATTCGCAACACTGACAATAGTAACATATGATTCTTACAGGTGAAGGAATCAGACTTCAAAGGAAAAAGAGAAAAAAATGTGGTTCAAATCCACAAGTGCAGGTAATTCTTTCTCGCAACAGAGTTCTATAATTAAGGCAATATTCTCTAACCGTTCATGGGGTCCCATCTCACCTGCTTGAGACAATTTCCACGCCCACAGAACCTTCTGTCTGTAATTATTATGCTTATTCTAAACTCTCAGTACTTAATCACAGTAAGTCATGTCCATCATTCACATCATTGAAAATTTGAAATTATCGTTGTCAAAATAACACTCGGCAAATATATATTGTGCCTAAACATATCCCATTTATTTGCAGGTTCCTAGAGCAAACTAACTGTGCTGGAATGTGCATTAATCTATGCAAGTTTCCATGTCAGGATTTCATCAAGGATTCTTTAGGAATGCCAGTCAGCATGGTCCCCAGTAAGTCTCCTCTCACTAAGCTATAAAACCACCGAACAATTGCGGCAACCATATACGGTTTTCCCAAAAGAAAAACAAAATTTCAAATTCACATAGACTGCAGCACAAGGCAATTCTAGACACTAGTTCAAGCTGTCTAACTCTAACTGAAGGCCATATTTCTTTTTTCTCGTATCCATAGTGTTCAGGTTTGTTTGCACACACCACTACTATTCTTACAAGATAATTGTCTGACTCTATTTAGTTTGGTTGCCAAAAAAAAAAAAAAAATCATAGGATATTAAACACAATTAAGCAGGTGAGTACAATGGCTAGAGCTCGTTCTCTCTAAGTTTTTTCCTATTTTCATGGGCTCTTTTTTATCATTAAACTAAATCATGGTGGTTAACTCAAAAGGCCATTATAAAAACTTCATATCCACATATAGAACATTAGAATTAAATTATTTCAAGACCTCTATATGGTTTAGATGAGAGGACACTAAATAAAGTAAATCTGCTATAGCGCAATGACTGGTAGATCCATGAGTAAAAGTGAAATTACTATTAAAGCAACATTACCAGCACCAAATGGTGGAAAGGATCATGGTTGTCAATGTGAATGGAGGGTCCCATGCACGAACCATTTTGGGTACAAAAGAACTGCAGATAGGCCCATCCAAGCTAAGTGGGATTTCTAACCTGCAGCTTAATTTTGCAATATGGTTATAATCCAAGAGTTAGAAGCTGAATTCCCATCGTTAATTAATCATCAAGCTGGATTTCCCACTGAGCCAGGTATCGCTCTTGGTCATGATATACATCAATCATCACAGGTGTAAAAAATGCAACCAAGCAAAGGCATTTTTCTTAGGCGTTAATTATGCACCATGATGTAACTAATAGCTGGGAACCACTAGTATTAATGTCAAAGACCAAGAAACACGTCAATAAGCAAGGGGAATCTGGGAGCAAATGGGGGCGGCAAGAAGTATTTAAAAATATGATTAAAATAAGTGTCTTTCTTTGCAGATTTTGATGACATGAGCTGTGAGATGATATTTGGAAAGGATCCACCGGCTGCAGTCGATGATCCAGCGCTTAAGCAACCATGTTACAAACTA ATGGAAGTAAGGAGAGTGATTTTGGGAAGTGGGACAAACGTGAGGAGAAGCAACAAAACGAAGAAGATGAGAAGAAAAAGCATTGCCTGTGTAGCAGTGCTTACAAGAGCAGCAGAGAGTGGAGCAACAGAAGAAACAAGAAAACCAAACACTGTTTATGCAGACAACTGGTTTGAGAAAATAGCCATCCACCATGTATCTCAGGCAGTACAAGCAACCTCAGGTTGGAGAAGCAAGAAGAGTGGATATGAAAGCTTGGTGGAAGTGGCAACAATGGCGTCAAGAAACTACAATCAGATCAAACAAAGAGAGGTTATCATTCAGGCGCTTGGAAGAGCATTTCCAGCTCCAATCCTCTCTTTGATAAGAACATTGCTACCTCAATCCAAATTCGCAAGGGAATATTTTGCTGCATTCACCACTGTCTTCTTTGCTTGGTTAGTTGGACCCTGCGAGGTGAAGGAATCAGACTTCAAAGGAAAAAGAGAAAAAAATGTGGTTCAAATCCACAAGTGCAGGTTCCTAGAGCAAACTAACTGTGCTGGAATGTGCATTAATCTATGCAAGTTTCCATGTCAGGATTTCATCAAGGATTCTTTAGGAATGCCAGTCAGCATGGTCCCCAATTTTGATGACATGAGCTGTGAGATGATATTTGGAAAGGATCCACCGGCTGCAGTCGATGATCCAGCGCTTAAGCAACCATGTTACAAACTA ATGGAAGTAAGGAGAGTGATTTTGGGAAGTGGGACAAACGTGAGGAGAAGCAACAAAACGAAGAAGATGAGAAGAAAAAGCATTGCCTGTGTAGCAGTGCTTACAAGAGCAGCAGAGAGTGGAGCAACAGAAGAAACAAGAAAACCAAACACTGTTTATGCAGACAACTGGTTTGAGAAAATAGCCATCCACCATGTATCTCAGGCAGTACAAGCAACCTCAGGTTGGAGAAGCAAGAAGAGTGGATATGAAAGCTTGGTGGAAGTGGCAACAATGGCGTCAAGAAACTACAATCAGATCAAACAAAGAGAGGTTATCATTCAGGCGCTTGGAAGAGCATTTCCAGCTCCAATCCTCTCTTTGATAAGAACATTGCTACCTCAATCCAAATTCGCAAGGGAATATTTTGCTGCATTCACCACTGTCTTCTTTGCTTGGTTAGTTGGACCCTGCGAGGTGAAGGAATCAGACTTCAAAGGAAAAAGAGAAAAAAATGTGGTTCAAATCCACAAGTGCAGGTTCCTAGAGCAAACTAACTGTGCTGGAATGTGCATTAATCTATGCAAGTTTCCATGTCAGGATTTCATCAAGGATTCTTTAGGAATGCCAGTCAGCATGGTCCCCAATTTTGATGACATGAGCTGTGAGATGATATTTGGAAAGGATCCACCGGCTGCAGTCGATGATCCAGCGCTTAAGCAACCATGTTACAAACTA MEVRRVILGSGTNVRRSNKTKKMRRKSIACVAVLTRAAESGATEETRKPNTVYADNWFEKIAIHHVSQAVQATSGWRSKKSGYESLVEVATMASRNYNQIKQREVIIQALGRAFPAPILSLIRTLLPQSKFAREYFAAFTTVFFAWLVGPCEVKESDFKGKREKNVVQIHKCRFLEQTNCAGMCINLCKFPCQDFIKDSLGMPVSMVPNFDDMSCEMIFGKDPPAAVDDPALKQPCYKL Homology
BLAST of Cp4.1LG15g00130 vs. ExPASy Swiss-Prot
Match: R4HZ96 (Beta-carotene isomerase D27, chloroplastic OS=Medicago truncatula OX=3880 GN=D27 PE=1 SV=1) HSP 1 Score: 294.3 bits (752), Expect = 1.3e-78 Identity = 138/221 (62.44%), Postives = 175/221 (79.19%), Query Frame = 0
BLAST of Cp4.1LG15g00130 vs. ExPASy Swiss-Prot
Match: C7AU21 (Beta-carotene isomerase D27, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=D27 PE=1 SV=1) HSP 1 Score: 255.8 bits (652), Expect = 5.0e-67 Identity = 126/234 (53.85%), Postives = 164/234 (70.09%), Query Frame = 0
BLAST of Cp4.1LG15g00130 vs. ExPASy Swiss-Prot
Match: Q7XA78 (Beta-carotene isomerase D27, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=D27 PE=1 SV=1) HSP 1 Score: 217.6 bits (553), Expect = 1.5e-55 Identity = 103/207 (49.76%), Postives = 146/207 (70.53%), Query Frame = 0
BLAST of Cp4.1LG15g00130 vs. NCBI nr
Match: XP_023511676.1 (beta-carotene isomerase D27, chloroplastic-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 479 bits (1234), Expect = 1.94e-170 Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 0
BLAST of Cp4.1LG15g00130 vs. NCBI nr
Match: XP_023511673.1 (beta-carotene isomerase D27, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023511675.1 beta-carotene isomerase D27, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 479 bits (1234), Expect = 3.48e-170 Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 0
BLAST of Cp4.1LG15g00130 vs. NCBI nr
Match: XP_022963901.1 (beta-carotene isomerase D27, chloroplastic-like isoform X3 [Cucurbita moschata]) HSP 1 Score: 476 bits (1225), Expect = 4.58e-169 Identity = 236/238 (99.16%), Postives = 236/238 (99.16%), Query Frame = 0
BLAST of Cp4.1LG15g00130 vs. NCBI nr
Match: XP_022963900.1 (beta-carotene isomerase D27, chloroplastic-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 476 bits (1225), Expect = 9.83e-169 Identity = 236/238 (99.16%), Postives = 236/238 (99.16%), Query Frame = 0
BLAST of Cp4.1LG15g00130 vs. NCBI nr
Match: XP_022967515.1 (beta-carotene isomerase D27, chloroplastic-like isoform X3 [Cucurbita maxima]) HSP 1 Score: 474 bits (1221), Expect = 1.86e-168 Identity = 235/238 (98.74%), Postives = 236/238 (99.16%), Query Frame = 0
BLAST of Cp4.1LG15g00130 vs. ExPASy TrEMBL
Match: A0A6J1HHC5 (beta-carotene isomerase D27, chloroplastic-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111464069 PE=4 SV=1) HSP 1 Score: 476 bits (1225), Expect = 2.22e-169 Identity = 236/238 (99.16%), Postives = 236/238 (99.16%), Query Frame = 0
BLAST of Cp4.1LG15g00130 vs. ExPASy TrEMBL
Match: A0A6J1HJA1 (beta-carotene isomerase D27, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111464069 PE=4 SV=1) HSP 1 Score: 476 bits (1225), Expect = 4.76e-169 Identity = 236/238 (99.16%), Postives = 236/238 (99.16%), Query Frame = 0
BLAST of Cp4.1LG15g00130 vs. ExPASy TrEMBL
Match: A0A6J1HUP9 (beta-carotene isomerase D27, chloroplastic-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111466998 PE=4 SV=1) HSP 1 Score: 474 bits (1221), Expect = 9.02e-169 Identity = 235/238 (98.74%), Postives = 236/238 (99.16%), Query Frame = 0
BLAST of Cp4.1LG15g00130 vs. ExPASy TrEMBL
Match: A0A6J1HLI8 (beta-carotene isomerase D27, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464069 PE=4 SV=1) HSP 1 Score: 476 bits (1225), Expect = 9.14e-169 Identity = 236/238 (99.16%), Postives = 236/238 (99.16%), Query Frame = 0
BLAST of Cp4.1LG15g00130 vs. ExPASy TrEMBL
Match: A0A6J1HWX8 (beta-carotene isomerase D27, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111466998 PE=4 SV=1) HSP 1 Score: 474 bits (1221), Expect = 1.94e-168 Identity = 235/238 (98.74%), Postives = 236/238 (99.16%), Query Frame = 0
BLAST of Cp4.1LG15g00130 vs. TAIR 10
Match: AT1G03055.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64680.1); Has 143 Blast hits to 143 proteins in 26 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). ) HSP 1 Score: 217.6 bits (553), Expect = 1.1e-56 Identity = 103/207 (49.76%), Postives = 146/207 (70.53%), Query Frame = 0
BLAST of Cp4.1LG15g00130 vs. TAIR 10
Match: AT1G64680.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03055.1); Has 146 Blast hits to 146 proteins in 26 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). ) HSP 1 Score: 154.1 bits (388), Expect = 1.4e-37 Identity = 78/214 (36.45%), Postives = 121/214 (56.54%), Query Frame = 0
BLAST of Cp4.1LG15g00130 vs. TAIR 10
Match: AT1G03055.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64680.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 120.2 bits (300), Expect = 2.3e-27 Identity = 63/142 (44.37%), Postives = 91/142 (64.08%), Query Frame = 0
BLAST of Cp4.1LG15g00130 vs. TAIR 10
Match: AT4G01995.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 106.7 bits (265), Expect = 2.7e-23 Identity = 77/243 (31.69%), Postives = 123/243 (50.62%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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