Cp4.1LG15g00100 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG15g00100
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Endo/exonuclease/phosphatase domain-containing protein
Location	Cp4.1LG15: 52862 .. 53675 (-)
RNA-Seq Expression	Cp4.1LG15g00100
Synteny	Cp4.1LG15g00100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAAGCCCACTTGAATGTCACTCTGCAACTCTCACACTTTCCTACTCCTCTTCTAAAATGCTCAACTTCCTCAACCGGACCCTCCGCCGCCTCTGCTCCCGTCTCCGATGGCCTCGTGCCCGGCGGGTCAGACCTAGGGTAGTCGTCATCAAGAAATTTGGAAAAACCACCTCCAAACCTCACGCCGATCCCCACAATACCCTCGACTCCTTCGTTAATGCCTCCTTGGCGTCGCCTGTTCATCCCAAACCTCAATTTCGCGGTCTTAATACCAACAGTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTGTAGCTTATGGAGTCCTCAAACAGCCTCCCCTTCGAGGTTCGACTACTTTTCTAGAGTCCTCAAACAAAGTACACCATTTGTTTGACATTTGAGTTGCTTTTGACTACACCTTCGAGGCTCACTACTTCTTTGTTTGACGTTTGAGAATTTTATTGAGATGGTTAAATTAAGGGCATGACTCTGATACCATGTTAGGAATCACAGATCTCCACAATAGTATGATATTGTCCAAGCTTTCATGGCTTTGCTTTGAGCTTCCCCAAAATGCCTCATATCAATGAAGATCTATTTTTTTACTTATAAATTTATGATCATCCTCTAAATTAGCCATTGTAGGACTTCCTTTCAACCATCGGAAAAGTAGTATTAGTTGGAAGTGGTAGTTGGTTGTAAACTATGTTGGAGAATCCCAACCACTATTCATTTGACATTAACCCGATACAGGTTGAAGCTGAGAGGGCACATGAAAGCAAGACATGCAAGGTGGGGGGAAGAACAGAGTAG

mRNA sequence

GTAAGCCCACTTGAATGTCACTCTGCAACTCTCACACTTTCCTACTCCTCTTCTAAAATGCTCAACTTCCTCAACCGGACCCTCCGCCGCCTCTGCTCCCGTCTCCGATGGCCTCGTGCCCGGCGGGTCAGACCTAGGGTAGTCGTCATCAAGAAATTTGGAAAAACCACCTCCAAACCTCACGCCGATCCCCACAATACCCTCGACTCCTTCGTTAATGCCTCCTTGGCGTCGCCTGTTGAAGCTGAGAGGGCACATGAAAGCAAGACATGCAAGGTGGGGGGAAGAACAGAGTAG

Coding sequence (CDS)

GTAAGCCCACTTGAATGTCACTCTGCAACTCTCACACTTTCCTACTCCTCTTCTAAAATGCTCAACTTCCTCAACCGGACCCTCCGCCGCCTCTGCTCCCGTCTCCGATGGCCTCGTGCCCGGCGGGTCAGACCTAGGGTAGTCGTCATCAAGAAATTTGGAAAAACCACCTCCAAACCTCACGCCGATCCCCACAATACCCTCGACTCCTTCGTTAATGCCTCCTTGGCGTCGCCTGTTGAAGCTGAGAGGGCACATGAAAGCAAGACATGCAAGGTGGGGGGAAGAACAGAGTAG

Protein sequence

VSPLECHSATLTLSYSSSKMLNFLNRTLRRLCSRLRWPRARRVRPRVVVIKKFGKTTSKPHADPHNTLDSFVNASLASPVEAERAHESKTCKVGGRTE

Homology

[Close]

BLAST of Cp4.1LG15g00100 vs. NCBI nr
Match: XP_022967537.1 (uncharacterized protein LOC111467014 [Cucurbita maxima])

HSP 1 Score: 142 bits (359), Expect = 7.21e-38
Identity = 72/78 (92.31%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 3  PLECHSATLTLSYSSSKMLNFLNRTLRRLCSRLRWPRARRVRPRVVVIKKFGKTTSKPHA 62
          P+ECHSATLTLSYSS KML FLNR+LRRLC+RLRWPRARRVRPRVVVIKKFGKTTSKPHA
Sbjct: 7  PVECHSATLTLSYSS-KMLKFLNRSLRRLCTRLRWPRARRVRPRVVVIKKFGKTTSKPHA 66

Query: 63 DPHNTLDSFVNASLASPV 80
          DPHNTLDSFVN SLASPV
Sbjct: 67 DPHNTLDSFVNGSLASPV 83

[Close]

BLAST of Cp4.1LG15g00100 vs. NCBI nr
Match: XP_023554061.1 (uncharacterized protein LOC111811442 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124 bits (310), Expect = 6.26e-31
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 20 MLNFLNRTLRRLCSRLRWPRARRVRPRVVVIKKFGKTTSKPHADPHNTLDSFVNASLASP 79
          MLNFLNRTLRRLCSRLRWPRARRVRPRVVVIKKFGKTTSKPHADPHNTLDSFVNASLASP
Sbjct: 1  MLNFLNRTLRRLCSRLRWPRARRVRPRVVVIKKFGKTTSKPHADPHNTLDSFVNASLASP 60

[Close]

BLAST of Cp4.1LG15g00100 vs. NCBI nr
Match: XP_022963872.1 (uncharacterized protein LOC111464053 [Cucurbita moschata] >KAG7011205.1 hypothetical protein SDJN02_26108, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122 bits (306), Expect = 2.34e-30
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 20 MLNFLNRTLRRLCSRLRWPRARRVRPRVVVIKKFGKTTSKPHADPHNTLDSFVNASLASP 79
          MLNFLNR+LRRLCSRLRWPRARRVRPRVVVIKKFGKTTSKPHADPHNTLDSFVNASLASP
Sbjct: 1  MLNFLNRSLRRLCSRLRWPRARRVRPRVVVIKKFGKTTSKPHADPHNTLDSFVNASLASP 60

[Close]

BLAST of Cp4.1LG15g00100 vs. NCBI nr
Match: KAG6571438.1 (hypothetical protein SDJN03_28166, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122 bits (306), Expect = 4.07e-30
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 20 MLNFLNRTLRRLCSRLRWPRARRVRPRVVVIKKFGKTTSKPHADPHNTLDSFVNASLASP 79
          MLNFLNR+LRRLCSRLRWPRARRVRPRVVVIKKFGKTTSKPHADPHNTLDSFVNASLASP
Sbjct: 1  MLNFLNRSLRRLCSRLRWPRARRVRPRVVVIKKFGKTTSKPHADPHNTLDSFVNASLASP 60

[Close]

BLAST of Cp4.1LG15g00100 vs. NCBI nr
Match: XP_038887606.1 (uncharacterized protein LOC120077715 [Benincasa hispida])

HSP 1 Score: 97.1 bits (240), Expect = 5.74e-21
Identity = 54/88 (61.36%), Postives = 66/88 (75.00%), Query Frame = 0


Query: 1   VSPLECHS---ATLTLSYS-----SSKMLNFLNRTLRRLCSRLRWPRARRVRPRVVVIKK 60
           +S +ECH+   A L L  S     +S ML FLNR+LRRLCSRLRWPR RR+RPRVV+IKK
Sbjct: 22  LSRVECHTNFHALLLLMLSPTHSSTSTMLKFLNRSLRRLCSRLRWPRRRRIRPRVVIIKK 81

Query: 61  FGKTTSKPHADPHNTLDSFVNASLASPV 80
           FGKTTSK  ++P+ ++DSFVNAS  S V
Sbjct: 82  FGKTTSKTKSNPNKSIDSFVNASSPSAV 109

[Close]

BLAST of Cp4.1LG15g00100 vs. ExPASy TrEMBL
Match: A0A6J1HR38 (uncharacterized protein LOC111467014 OS=Cucurbita maxima OX=3661 GN=LOC111467014 PE=4 SV=1)

HSP 1 Score: 142 bits (359), Expect = 3.49e-38
Identity = 72/78 (92.31%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 3  PLECHSATLTLSYSSSKMLNFLNRTLRRLCSRLRWPRARRVRPRVVVIKKFGKTTSKPHA 62
          P+ECHSATLTLSYSS KML FLNR+LRRLC+RLRWPRARRVRPRVVVIKKFGKTTSKPHA
Sbjct: 7  PVECHSATLTLSYSS-KMLKFLNRSLRRLCTRLRWPRARRVRPRVVVIKKFGKTTSKPHA 66

Query: 63 DPHNTLDSFVNASLASPV 80
          DPHNTLDSFVN SLASPV
Sbjct: 67 DPHNTLDSFVNGSLASPV 83

[Close]

BLAST of Cp4.1LG15g00100 vs. ExPASy TrEMBL
Match: A0A6J1HGD4 (uncharacterized protein LOC111464053 OS=Cucurbita moschata OX=3662 GN=LOC111464053 PE=4 SV=1)

HSP 1 Score: 122 bits (306), Expect = 1.13e-30
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 20 MLNFLNRTLRRLCSRLRWPRARRVRPRVVVIKKFGKTTSKPHADPHNTLDSFVNASLASP 79
          MLNFLNR+LRRLCSRLRWPRARRVRPRVVVIKKFGKTTSKPHADPHNTLDSFVNASLASP
Sbjct: 1  MLNFLNRSLRRLCSRLRWPRARRVRPRVVVIKKFGKTTSKPHADPHNTLDSFVNASLASP 60

[Close]

BLAST of Cp4.1LG15g00100 vs. ExPASy TrEMBL
Match: A0A5A7UUR9 (DNAse I-like superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold496G00650 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.24e-17
Identity = 45/62 (72.58%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 20 MLNFLNRTLRRLCSRLRWPRARRVRPRVVVIKKFGKTTS-KPHADPHNTLDSFVNASLAS 79
          ML FLNR LRRLCSRLRWPR RR+RPRV+VIKKFGKTTS + ++ P  T+DSFVNAS  S
Sbjct: 1  MLKFLNRKLRRLCSRLRWPRRRRIRPRVLVIKKFGKTTSYETNSHPEKTIDSFVNASSPS 60

[Close]

BLAST of Cp4.1LG15g00100 vs. ExPASy TrEMBL
Match: A0A1S3BLG5 (uncharacterized protein LOC103491341 OS=Cucumis melo OX=3656 GN=LOC103491341 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.24e-17
Identity = 45/62 (72.58%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 20 MLNFLNRTLRRLCSRLRWPRARRVRPRVVVIKKFGKTTS-KPHADPHNTLDSFVNASLAS 79
          ML FLNR LRRLCSRLRWPR RR+RPRV+VIKKFGKTTS + ++ P  T+DSFVNAS  S
Sbjct: 1  MLKFLNRKLRRLCSRLRWPRRRRIRPRVLVIKKFGKTTSYETNSHPEKTIDSFVNASSPS 60

[Close]

BLAST of Cp4.1LG15g00100 vs. ExPASy TrEMBL
Match: A0A0A0KDU0 (Endo/exonuclease/phosphatase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G409370 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.97e-16
Identity = 43/62 (69.35%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 20 MLNFLNRTLRRLCSRLRWPRARRVRPRVVVIKKFGKTTSKPHADPHNTLDSFVN-ASLAS 79
          ML FLNR LRRLCSRLRWPR R +RPRV++IKKFGKTTS+  + P  T+DSFVN AS  S
Sbjct: 1  MLKFLNRKLRRLCSRLRWPRRRTIRPRVLIIKKFGKTTSQTTSHPDKTIDSFVNIASSPS 60

The following BLAST results are available for this feature:

BLAST of Cp4.1LG15g00100 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG15g00100 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022967537.1	7.21e-38	92.31	uncharacterized protein LOC111467014 [Cucurbita maxima]	[more]
XP_023554061.1	6.26e-31	100.00	uncharacterized protein LOC111811442 [Cucurbita pepo subsp. pepo]	[more]
XP_022963872.1	2.34e-30	98.36	uncharacterized protein LOC111464053 [Cucurbita moschata] >KAG7011205.1 hypothet...	[more]
KAG6571438.1	4.07e-30	98.36	hypothetical protein SDJN03_28166, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038887606.1	5.74e-21	61.36	uncharacterized protein LOC120077715 [Benincasa hispida]	[more]

BLAST of Cp4.1LG15g00100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HR38	3.49e-38	92.31	uncharacterized protein LOC111467014 OS=Cucurbita maxima OX=3661 GN=LOC111467014...	[more]
A0A6J1HGD4	1.13e-30	98.36	uncharacterized protein LOC111464053 OS=Cucurbita moschata OX=3662 GN=LOC1114640...	[more]
A0A5A7UUR9	1.24e-17	72.58	DNAse I-like superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3BLG5	1.24e-17	72.58	uncharacterized protein LOC103491341 OS=Cucumis melo OX=3656 GN=LOC103491341 PE=...	[more]
A0A0A0KDU0	3.97e-16	69.35	Endo/exonuclease/phosphatase domain-containing protein OS=Cucumis sativus OX=365...	[more]

BLAST of Cp4.1LG15g00100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG15g00100.1	Cp4.1LG15g00100.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006506	GPI anchor biosynthetic process
cellular_component	GO:0005783	endoplasmic reticulum
molecular_function	GO:0003824	catalytic activity