Cp4.1LG13g06130 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TATACGGCTAATTACTTCACCCAAATTTCAAATAAGCCTTGGGTGGGTCGTGGAGGAGGCTGTAGTTCGTCCAGTTCCAGCACGGCGTTAGTCCAATCGGAGAACGCCGCTGCTATTTCTCTCAAGCTACACTTTCGAGCAAGTTTTCAGCCATGGGAAAGAAGGCTAAATCTTCTGGTCCTGTTGCAGTCGTTCAATCTAAGCGTAACGAAGAGTAAGCCTGCTTTTCTTGCTCACTTTCATACTTTTCGGACCTTTTCCCGCTCTTCGCCATTCGATCTTTCACCTTGATGTTTTTGTTAATTTACGATGGATTGTGTTTTCGGAATTTGATTGTCCCAGTTCCTACGAAGGGGAACGTCTCGATGAGTTGCTGCAGTCGATTCAGAGGTAAACAATAGTTAATTTGTCTAATAATGCGCTTCAAGCCACCGATAGCTGATCATTGTACTTAACAGGGAGATAAAGAGAGCAAGATGTCTGAATGCGGAAACCTTGCCGGAAAAAATTTGGCTCAAGGTTTCCACTAATTTTTCTGTTTCAATGATGTTTCTCCGTATTTTTAACGTCTTTAGTTTCTCCTTGCCGTGCCATATCGATATCGATTTTTGTTATTAGTTTGAGAAACAAAAATTGAATTCATGACTCCTTTTATAAGCCGCTGATGTTGAGTGATGGGCTTCTTTTCAGAAACAATTTGCAATTGGAGTTAATGAGGTTACTAGAGTCCTTGAACGGATGACGCCAAGTGAAGATTCTGCTCGCATAGTGAACCCTAATTATAAGGCGTGTACAGTCAGGCTTCAGGTTTGTCTACTCTTATCTTGATTTTCGGCATTGCTATCTAGGGTTCAGGAATTTTCCGGATGCTTATTAATAGAATCCCAGCTTTTCCCTTCTACGGTAGTGTTGTTGCTCTTCATTTTATTATTTCTGGTGGATTGATGGACCCTTTAATTAGCTCGAAGTCATAAGTGTTACTTTCTTGGTTTTGTTTCAGTTTTGTGTCAATCTCATGCGTGACAACCAATTTAAAACATGGCCTGCATTTGGCGCTTCCATGAGCTCTAGTTATGATAAGCGAATTTATGTAACTATCCGTTAGGTTTCATCCTTTTAAATTGGGGTCCTTGTCTATAGTTTTATGGGCTCTGTTTATTTTACTGTTTTTTGTATGTCCTTGTAAGTTCTTCCAATCTTTTCCCCTATTAATGAAAGCTGGGTTTCTTATAGAAAAATTAAAAATAAGTGACCTAGATACTTCAAATACTAGGTTAAAGAGAAGGTCAAGGTAACCATTTCATGTGGGTGAGCGCGAGCACACGTCTTTCATGGGAAGAGAATCGATTAAAAACATGAGCCACATTTGCTGCTTCCATGAGCTCTAGTTGTGATAAGCAAAATTTCTGTAATTATCGTTAGGTTTCATCCTTTAAAATTGGGGTTCTTGTTTTGTTGTTTAATGGACTCCATTTATTGGTTGTTCTTTTGTATGCCCTTGTTCATTCTTTTAATTTTTTGTTTAATCAATGAATTAGCTGACCTAGATACTTCAAATACTAGGTTAAAGACCCTCTTGCACCAAATGTCCTGTTTACTTAATAGGCAATGATAATTGCACAACAGAAGATCTCAAATGCCGCAGACATGAACTTCTTAGGAGGCTAGTCGTGCAGTGAAACACCACGTATGCTTAGAAAAATGTTTTGGAGGTTAAAAGACGTTAAACTGGTAGAACCAAGAAGCGAAGATGAAGTCCATGGATGAACACTCCCATAAGTCTTTTTGGATTAGGCAATGGTGTATACAGTTCATACCTGTCACTTGAGAACTAGATATCTCAGAGAGTTAGTAACTTCCGGCCTAGGTTGTGGTCTTAAGAAATGTAATTATCTTGTCGAAAGTGTCCAATTCATCCATTCGAGTGTACTTGAGGACAATAATTTCTTTTGAGAGAAGAAGTTCCACTGTGGAAAGTTCTTGTTGATTCTCATGTTGAAGGCAACTATCTTAAAACTTCTTAAAGCCCTCATAGTCTTGATACAAATTTTCATTGGTGTCAAATGATATCAACAAATCCCTTAGTGTAGTTAACATGGTTACATGCCTTCTTGGGTGTACACCACTTGATTGGTATAGCCATTGAAATGTGCTTGGCCACAGTCCAAAACTTCTACAAGAATTACCCCTTGTCCATGTATCCTACAGAGTATTGTTTGTGAAGCATTCCATCTCAATGTTTGGTGCAAGTATGAAGCAAATTTAGTGGGGATTACGTAGTGTTCCTTATGTAGCAAGAATTGAGACGAGGCTTTGAACTCCTATTGGTAAGTGAGCTTTTCCTCCGTGGTAAGCTTAGTTTCTCACTAAAATATTTCATTGACTTGTCATTTTTAGATAGGACTGCTCCCATACCTTTAGCAGAAGCATCCGTCTGGACTTCAAAGAGGATGCCACATTTTGGCCAGGCCAAGATGGCTGCAACTATCTGCTTTCCTTTAGTGTTTGGAGGCCTATTTCTATAGTCCCAGGATACCTAGTATGGGTCCACTCATACAAAATTGATTCCCATTACGAATCCTAAGAACAACAGTTTTGTAAGAAGCATGTACTTGGAGATATTAAAGTAAAGCTCGGTGGAATTTAGAGTAGTTTGTCGTCTAAGTAGACAATAAGGGATTTACCTCATATGTATGGTCATAATACATGTACCATCAGGCACATAAAAGTACTTGGAGCTTTGATCGAGCCAAAAGCCACACGCACAACTTACCGTATTTGTAACACTCATCAAGTCTTGAAGGCTATTTTTCATTATCTCTTGGTTTAGTGCAATTTTGATGTTAGCAACTTTTAATGTCTCGTTTAGCGAAGAGGATTGCAGTGCACCATGTAATTGGTCGATGAGATTTGAATGTGGTTTTGTACAGGGAGTTGATATTTTATGGCAAATTAGTAACTCTATTCTCGTTATGGATTCTATACCATTCTAGTTTCAGCAATGAATGTCATTTTGAATTCCCTAGGACATGCATCTGCTTGATATATAACTCTCATGTTTTAATTAAACTCAACTCATCAAGCTTTGCCTACTGTCTTTTCTGTATACGGTGTCTAATTATTCGGCGTTTCGCCTTTTATTATGTAGGCTATACTTTTAACTGCTGATTGCAACCCTCGATGGCTGACAAACCATGTGCCAAGCTTGGCCATATCTAGGAAGGTACCATTGATACTCGTGAAAGATAAAGAGGGTTCTTTAAGGTTAGGTGAACTAGTTAACCTTAAAACAGCAATTGCAATTGGAATAAAGGTGAGGAGGAAATATTTAGATAATGAATAGCCTGTTCAATCTTTTTTTGTCTAAAAACGCTATTATTCATGAAGTTTCATGTTTCCAAACGAATTGCAGGCGAATGGGAGCCCTATTAATCAACTTATTGGTGAAATTCTTCAAAGAACAACATAAAAACACGTCGCAGAATACAACAAAGTTGTCTGGTGTACAGTAAAAATGGTATGAAATAGAGGCAGTCTGAGATTTGTAGTTCGTGCTGCTGATTCACTCTTGATAATGACCGCCACTATGGCTTTTAGTATCCTTATAAAGAATGTTTGCAGAAGCCTGAGATGGTAGGATAGCAATTCTTATGTAATACATTGGGGGATTCCAAATTGCGTGCGGAGTTTAAATTTAGTGTTGTTATTGTGGCTGATAGAGTTCAGAAAGTCCATAACATCTTGTCTTCTCCATTCTATTGGAAGTAATAAAATGTAGGGAAATTTTCAATGTATATTCCCATTTAAA TATACGGCTAATTACTTCACCCAAATTTCAAATAAGCCTTGGGTGGGTCGTGGAGGAGGCTGTAGTTCGTCCAGTTCCAGCACGGCGTTAGTCCAATCGGAGAACGCCGCTGCTATTTCTCTCAAGCTACACTTTCGAGCAAGTTTTCAGCCATGGGAAAGAAGGCTAAATCTTCTGGTCCTGTTGCAGTCGTTCAATCTAAGCGTAACGAAGATTCCTACGAAGGGGAACGTCTCGATGAGTTGCTGCAGTCGATTCAGAGGGAGATAAAGAGAGCAAGATGTCTGAATGCGGAAACCTTGCCGGAAAAAATTTGGCTCAAGAAACAATTTGCAATTGGAGTTAATGAGGTTACTAGAGTCCTTGAACGGATGACGCCAAGTGAAGATTCTGCTCGCATAGTGAACCCTAATTATAAGGCGTGTACAGTCAGGCTTCAGGCTATACTTTTAACTGCTGATTGCAACCCTCGATGGCTGACAAACCATGTGCCAAGCTTGGCCATATCTAGGAAGGTACCATTGATACTCGTGAAAGATAAAGAGGGTTCTTTAAGGTTAGGTGAACTAGTTAACCTTAAAACAGCAATTGCAATTGGAATAAAGGCGAATGGGAGCCCTATTAATCAACTTATTGGTGAAATTCTTCAAAGAACAACATAAAAACACGTCGCAGAATACAACAAAGTTGTCTGGTGTACAGTAAAAATGGTATGAAATAGAGGCAGTCTGAGATTTGTAGTTCGTGCTGCTGATTCACTCTTGATAATGACCGCCACTATGGCTTTTAGTATCCTTATAAAGAATGTTTGCAGAAGCCTGAGATGGTAGGATAGCAATTCTTATGTAATACATTGGGGGATTCCAAATTGCGTGCGGAGTTTAAATTTAGTGTTGTTATTGTGGCTGATAGAGTTCAGAAAGTCCATAACATCTTGTCTTCTCCATTCTATTGGAAGTAATAAAATGTAGGGAAATTTTCAATGTATATTCCCATTTAAA ATGGGAAAGAAGGCTAAATCTTCTGGTCCTGTTGCAGTCGTTCAATCTAAGCGTAACGAAGATTCCTACGAAGGGGAACGTCTCGATGAGTTGCTGCAGTCGATTCAGAGGGAGATAAAGAGAGCAAGATGTCTGAATGCGGAAACCTTGCCGGAAAAAATTTGGCTCAAGAAACAATTTGCAATTGGAGTTAATGAGGTTACTAGAGTCCTTGAACGGATGACGCCAAGTGAAGATTCTGCTCGCATAGTGAACCCTAATTATAAGGCGTGTACAGTCAGGCTTCAGGCTATACTTTTAACTGCTGATTGCAACCCTCGATGGCTGACAAACCATGTGCCAAGCTTGGCCATATCTAGGAAGGTACCATTGATACTCGTGAAAGATAAAGAGGGTTCTTTAAGGTTAGGTGAACTAGTTAACCTTAAAACAGCAATTGCAATTGGAATAAAGGCGAATGGGAGCCCTATTAATCAACTTATTGGTGAAATTCTTCAAAGAACAACATAA MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAETLPEKIWLKKQFAIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPINQLIGEILQRTT Homology
BLAST of Cp4.1LG13g06130 vs. ExPASy Swiss-Prot
Match: Q32LC1 (Ribonuclease P protein subunit p38 OS=Bos taurus OX=9913 GN=RPP38 PE=2 SV=2) HSP 1 Score: 49.3 bits (116), Expect = 5.0e-05 Identity = 36/112 (32.14%), Postives = 51/112 (45.54%), Query Frame = 0
BLAST of Cp4.1LG13g06130 vs. ExPASy Swiss-Prot
Match: P78345 (Ribonuclease P protein subunit p38 OS=Homo sapiens OX=9606 GN=RPP38 PE=1 SV=2) HSP 1 Score: 48.5 bits (114), Expect = 8.5e-05 Identity = 34/112 (30.36%), Postives = 51/112 (45.54%), Query Frame = 0
BLAST of Cp4.1LG13g06130 vs. ExPASy Swiss-Prot
Match: Q80UU2 (Ribonuclease P protein subunit p38 OS=Mus musculus OX=10090 GN=Rpp38 PE=1 SV=1) HSP 1 Score: 46.6 bits (109), Expect = 3.2e-04 Identity = 33/114 (28.95%), Postives = 52/114 (45.61%), Query Frame = 0
BLAST of Cp4.1LG13g06130 vs. NCBI nr
Match: XP_023549838.1 (ribonuclease P protein subunit p38 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 330 bits (846), Expect = 6.90e-114 Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0
BLAST of Cp4.1LG13g06130 vs. NCBI nr
Match: KAG6579150.1 (hypothetical protein SDJN03_23598, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016668.1 hypothetical protein SDJN02_21778 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 328 bits (841), Expect = 4.00e-113 Identity = 167/169 (98.82%), Postives = 169/169 (100.00%), Query Frame = 0
BLAST of Cp4.1LG13g06130 vs. NCBI nr
Match: XP_022938626.1 (ribonuclease P protein subunit p38 [Cucurbita moschata]) HSP 1 Score: 325 bits (834), Expect = 4.67e-112 Identity = 166/169 (98.22%), Postives = 168/169 (99.41%), Query Frame = 0
BLAST of Cp4.1LG13g06130 vs. NCBI nr
Match: XP_022993803.1 (ribonuclease P protein subunit p38 [Cucurbita maxima]) HSP 1 Score: 311 bits (797), Expect = 1.98e-106 Identity = 161/169 (95.27%), Postives = 165/169 (97.63%), Query Frame = 0
BLAST of Cp4.1LG13g06130 vs. NCBI nr
Match: XP_038875290.1 (ribonuclease P protein subunit p38 [Benincasa hispida]) HSP 1 Score: 298 bits (762), Expect = 4.43e-101 Identity = 152/169 (89.94%), Postives = 160/169 (94.67%), Query Frame = 0
BLAST of Cp4.1LG13g06130 vs. ExPASy TrEMBL
Match: A0A6J1FDN9 (ribonuclease P protein subunit p38 OS=Cucurbita moschata OX=3662 GN=LOC111444805 PE=4 SV=1) HSP 1 Score: 325 bits (834), Expect = 2.26e-112 Identity = 166/169 (98.22%), Postives = 168/169 (99.41%), Query Frame = 0
BLAST of Cp4.1LG13g06130 vs. ExPASy TrEMBL
Match: A0A6J1K3C5 (ribonuclease P protein subunit p38 OS=Cucurbita maxima OX=3661 GN=LOC111489702 PE=4 SV=1) HSP 1 Score: 311 bits (797), Expect = 9.57e-107 Identity = 161/169 (95.27%), Postives = 165/169 (97.63%), Query Frame = 0
BLAST of Cp4.1LG13g06130 vs. ExPASy TrEMBL
Match: A0A6J1CZ90 (ribonuclease P protein subunit p38 OS=Momordica charantia OX=3673 GN=LOC111015626 PE=4 SV=1) HSP 1 Score: 280 bits (715), Expect = 3.59e-94 Identity = 142/168 (84.52%), Postives = 154/168 (91.67%), Query Frame = 0
BLAST of Cp4.1LG13g06130 vs. ExPASy TrEMBL
Match: A0A1S3CR39 (ribonuclease P protein subunit p38 isoform X6 OS=Cucumis melo OX=3656 GN=LOC103503720 PE=4 SV=1) HSP 1 Score: 275 bits (704), Expect = 1.54e-92 Identity = 143/169 (84.62%), Postives = 152/169 (89.94%), Query Frame = 0
BLAST of Cp4.1LG13g06130 vs. ExPASy TrEMBL
Match: A0A1S3CQV2 (ribonuclease P protein subunit p38 isoform X5 OS=Cucumis melo OX=3656 GN=LOC103503720 PE=4 SV=1) HSP 1 Score: 271 bits (692), Expect = 1.07e-90 Identity = 143/170 (84.12%), Postives = 152/170 (89.41%), Query Frame = 0
BLAST of Cp4.1LG13g06130 vs. TAIR 10
Match: AT4G01790.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein ) HSP 1 Score: 162.9 bits (411), Expect = 2.2e-40 Identity = 86/151 (56.95%), Postives = 107/151 (70.86%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|