Cp4.1LG13g06130 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG13g06130
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	ribonuclease P protein subunit p38
Location	Cp4.1LG13: 4858116 .. 4861923 (-)
RNA-Seq Expression	Cp4.1LG13g06130
Synteny	Cp4.1LG13g06130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATACGGCTAATTACTTCACCCAAATTTCAAATAAGCCTTGGGTGGGTCGTGGAGGAGGCTGTAGTTCGTCCAGTTCCAGCACGGCGTTAGTCCAATCGGAGAACGCCGCTGCTATTTCTCTCAAGCTACACTTTCGAGCAAGTTTTCAGCCATGGGAAAGAAGGCTAAATCTTCTGGTCCTGTTGCAGTCGTTCAATCTAAGCGTAACGAAGAGTAAGCCTGCTTTTCTTGCTCACTTTCATACTTTTCGGACCTTTTCCCGCTCTTCGCCATTCGATCTTTCACCTTGATGTTTTTGTTAATTTACGATGGATTGTGTTTTCGGAATTTGATTGTCCCAGTTCCTACGAAGGGGAACGTCTCGATGAGTTGCTGCAGTCGATTCAGAGGTAAACAATAGTTAATTTGTCTAATAATGCGCTTCAAGCCACCGATAGCTGATCATTGTACTTAACAGGGAGATAAAGAGAGCAAGATGTCTGAATGCGGAAACCTTGCCGGAAAAAATTTGGCTCAAGGTTTCCACTAATTTTTCTGTTTCAATGATGTTTCTCCGTATTTTTAACGTCTTTAGTTTCTCCTTGCCGTGCCATATCGATATCGATTTTTGTTATTAGTTTGAGAAACAAAAATTGAATTCATGACTCCTTTTATAAGCCGCTGATGTTGAGTGATGGGCTTCTTTTCAGAAACAATTTGCAATTGGAGTTAATGAGGTTACTAGAGTCCTTGAACGGATGACGCCAAGTGAAGATTCTGCTCGCATAGTGAACCCTAATTATAAGGCGTGTACAGTCAGGCTTCAGGTTTGTCTACTCTTATCTTGATTTTCGGCATTGCTATCTAGGGTTCAGGAATTTTCCGGATGCTTATTAATAGAATCCCAGCTTTTCCCTTCTACGGTAGTGTTGTTGCTCTTCATTTTATTATTTCTGGTGGATTGATGGACCCTTTAATTAGCTCGAAGTCATAAGTGTTACTTTCTTGGTTTTGTTTCAGTTTTGTGTCAATCTCATGCGTGACAACCAATTTAAAACATGGCCTGCATTTGGCGCTTCCATGAGCTCTAGTTATGATAAGCGAATTTATGTAACTATCCGTTAGGTTTCATCCTTTTAAATTGGGGTCCTTGTCTATAGTTTTATGGGCTCTGTTTATTTTACTGTTTTTTGTATGTCCTTGTAAGTTCTTCCAATCTTTTCCCCTATTAATGAAAGCTGGGTTTCTTATAGAAAAATTAAAAATAAGTGACCTAGATACTTCAAATACTAGGTTAAAGAGAAGGTCAAGGTAACCATTTCATGTGGGTGAGCGCGAGCACACGTCTTTCATGGGAAGAGAATCGATTAAAAACATGAGCCACATTTGCTGCTTCCATGAGCTCTAGTTGTGATAAGCAAAATTTCTGTAATTATCGTTAGGTTTCATCCTTTAAAATTGGGGTTCTTGTTTTGTTGTTTAATGGACTCCATTTATTGGTTGTTCTTTTGTATGCCCTTGTTCATTCTTTTAATTTTTTGTTTAATCAATGAATTAGCTGACCTAGATACTTCAAATACTAGGTTAAAGACCCTCTTGCACCAAATGTCCTGTTTACTTAATAGGCAATGATAATTGCACAACAGAAGATCTCAAATGCCGCAGACATGAACTTCTTAGGAGGCTAGTCGTGCAGTGAAACACCACGTATGCTTAGAAAAATGTTTTGGAGGTTAAAAGACGTTAAACTGGTAGAACCAAGAAGCGAAGATGAAGTCCATGGATGAACACTCCCATAAGTCTTTTTGGATTAGGCAATGGTGTATACAGTTCATACCTGTCACTTGAGAACTAGATATCTCAGAGAGTTAGTAACTTCCGGCCTAGGTTGTGGTCTTAAGAAATGTAATTATCTTGTCGAAAGTGTCCAATTCATCCATTCGAGTGTACTTGAGGACAATAATTTCTTTTGAGAGAAGAAGTTCCACTGTGGAAAGTTCTTGTTGATTCTCATGTTGAAGGCAACTATCTTAAAACTTCTTAAAGCCCTCATAGTCTTGATACAAATTTTCATTGGTGTCAAATGATATCAACAAATCCCTTAGTGTAGTTAACATGGTTACATGCCTTCTTGGGTGTACACCACTTGATTGGTATAGCCATTGAAATGTGCTTGGCCACAGTCCAAAACTTCTACAAGAATTACCCCTTGTCCATGTATCCTACAGAGTATTGTTTGTGAAGCATTCCATCTCAATGTTTGGTGCAAGTATGAAGCAAATTTAGTGGGGATTACGTAGTGTTCCTTATGTAGCAAGAATTGAGACGAGGCTTTGAACTCCTATTGGTAAGTGAGCTTTTCCTCCGTGGTAAGCTTAGTTTCTCACTAAAATATTTCATTGACTTGTCATTTTTAGATAGGACTGCTCCCATACCTTTAGCAGAAGCATCCGTCTGGACTTCAAAGAGGATGCCACATTTTGGCCAGGCCAAGATGGCTGCAACTATCTGCTTTCCTTTAGTGTTTGGAGGCCTATTTCTATAGTCCCAGGATACCTAGTATGGGTCCACTCATACAAAATTGATTCCCATTACGAATCCTAAGAACAACAGTTTTGTAAGAAGCATGTACTTGGAGATATTAAAGTAAAGCTCGGTGGAATTTAGAGTAGTTTGTCGTCTAAGTAGACAATAAGGGATTTACCTCATATGTATGGTCATAATACATGTACCATCAGGCACATAAAAGTACTTGGAGCTTTGATCGAGCCAAAAGCCACACGCACAACTTACCGTATTTGTAACACTCATCAAGTCTTGAAGGCTATTTTTCATTATCTCTTGGTTTAGTGCAATTTTGATGTTAGCAACTTTTAATGTCTCGTTTAGCGAAGAGGATTGCAGTGCACCATGTAATTGGTCGATGAGATTTGAATGTGGTTTTGTACAGGGAGTTGATATTTTATGGCAAATTAGTAACTCTATTCTCGTTATGGATTCTATACCATTCTAGTTTCAGCAATGAATGTCATTTTGAATTCCCTAGGACATGCATCTGCTTGATATATAACTCTCATGTTTTAATTAAACTCAACTCATCAAGCTTTGCCTACTGTCTTTTCTGTATACGGTGTCTAATTATTCGGCGTTTCGCCTTTTATTATGTAGGCTATACTTTTAACTGCTGATTGCAACCCTCGATGGCTGACAAACCATGTGCCAAGCTTGGCCATATCTAGGAAGGTACCATTGATACTCGTGAAAGATAAAGAGGGTTCTTTAAGGTTAGGTGAACTAGTTAACCTTAAAACAGCAATTGCAATTGGAATAAAGGTGAGGAGGAAATATTTAGATAATGAATAGCCTGTTCAATCTTTTTTTGTCTAAAAACGCTATTATTCATGAAGTTTCATGTTTCCAAACGAATTGCAGGCGAATGGGAGCCCTATTAATCAACTTATTGGTGAAATTCTTCAAAGAACAACATAAAAACACGTCGCAGAATACAACAAAGTTGTCTGGTGTACAGTAAAAATGGTATGAAATAGAGGCAGTCTGAGATTTGTAGTTCGTGCTGCTGATTCACTCTTGATAATGACCGCCACTATGGCTTTTAGTATCCTTATAAAGAATGTTTGCAGAAGCCTGAGATGGTAGGATAGCAATTCTTATGTAATACATTGGGGGATTCCAAATTGCGTGCGGAGTTTAAATTTAGTGTTGTTATTGTGGCTGATAGAGTTCAGAAAGTCCATAACATCTTGTCTTCTCCATTCTATTGGAAGTAATAAAATGTAGGGAAATTTTCAATGTATATTCCCATTTAAA

mRNA sequence

TATACGGCTAATTACTTCACCCAAATTTCAAATAAGCCTTGGGTGGGTCGTGGAGGAGGCTGTAGTTCGTCCAGTTCCAGCACGGCGTTAGTCCAATCGGAGAACGCCGCTGCTATTTCTCTCAAGCTACACTTTCGAGCAAGTTTTCAGCCATGGGAAAGAAGGCTAAATCTTCTGGTCCTGTTGCAGTCGTTCAATCTAAGCGTAACGAAGATTCCTACGAAGGGGAACGTCTCGATGAGTTGCTGCAGTCGATTCAGAGGGAGATAAAGAGAGCAAGATGTCTGAATGCGGAAACCTTGCCGGAAAAAATTTGGCTCAAGAAACAATTTGCAATTGGAGTTAATGAGGTTACTAGAGTCCTTGAACGGATGACGCCAAGTGAAGATTCTGCTCGCATAGTGAACCCTAATTATAAGGCGTGTACAGTCAGGCTTCAGGCTATACTTTTAACTGCTGATTGCAACCCTCGATGGCTGACAAACCATGTGCCAAGCTTGGCCATATCTAGGAAGGTACCATTGATACTCGTGAAAGATAAAGAGGGTTCTTTAAGGTTAGGTGAACTAGTTAACCTTAAAACAGCAATTGCAATTGGAATAAAGGCGAATGGGAGCCCTATTAATCAACTTATTGGTGAAATTCTTCAAAGAACAACATAAAAACACGTCGCAGAATACAACAAAGTTGTCTGGTGTACAGTAAAAATGGTATGAAATAGAGGCAGTCTGAGATTTGTAGTTCGTGCTGCTGATTCACTCTTGATAATGACCGCCACTATGGCTTTTAGTATCCTTATAAAGAATGTTTGCAGAAGCCTGAGATGGTAGGATAGCAATTCTTATGTAATACATTGGGGGATTCCAAATTGCGTGCGGAGTTTAAATTTAGTGTTGTTATTGTGGCTGATAGAGTTCAGAAAGTCCATAACATCTTGTCTTCTCCATTCTATTGGAAGTAATAAAATGTAGGGAAATTTTCAATGTATATTCCCATTTAAA

Coding sequence (CDS)

ATGGGAAAGAAGGCTAAATCTTCTGGTCCTGTTGCAGTCGTTCAATCTAAGCGTAACGAAGATTCCTACGAAGGGGAACGTCTCGATGAGTTGCTGCAGTCGATTCAGAGGGAGATAAAGAGAGCAAGATGTCTGAATGCGGAAACCTTGCCGGAAAAAATTTGGCTCAAGAAACAATTTGCAATTGGAGTTAATGAGGTTACTAGAGTCCTTGAACGGATGACGCCAAGTGAAGATTCTGCTCGCATAGTGAACCCTAATTATAAGGCGTGTACAGTCAGGCTTCAGGCTATACTTTTAACTGCTGATTGCAACCCTCGATGGCTGACAAACCATGTGCCAAGCTTGGCCATATCTAGGAAGGTACCATTGATACTCGTGAAAGATAAAGAGGGTTCTTTAAGGTTAGGTGAACTAGTTAACCTTAAAACAGCAATTGCAATTGGAATAAAGGCGAATGGGAGCCCTATTAATCAACTTATTGGTGAAATTCTTCAAAGAACAACATAA

Protein sequence

MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAETLPEKIWLKKQFAIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPINQLIGEILQRTT

Homology

[Close]

BLAST of Cp4.1LG13g06130 vs. ExPASy Swiss-Prot
Match: Q32LC1 (Ribonuclease P protein subunit p38 OS=Bos taurus OX=9913 GN=RPP38 PE=2 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 5.0e-05
Identity = 36/112 (32.14%), Postives = 51/112 (45.54%), Query Frame = 0


Query: 56  LKKQFAIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPS 115
           ++KQ AIG+NEVTR LER                     L   L      P  +T+H+  
Sbjct: 109 VRKQLAIGINEVTRALERN-------------------ELLLALACKSAKPAIVTSHLVQ 168

Query: 116 LAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPINQLIGEILQR 168
           L++SR VP   V     S RL  ++ LK  +A+G K N +   + +  IL R
Sbjct: 169 LSVSRGVPACQV--PRLSERLAPVLGLKCVLALGFKRNTTAFGEELRAILPR 199

[Close]

BLAST of Cp4.1LG13g06130 vs. ExPASy Swiss-Prot
Match: P78345 (Ribonuclease P protein subunit p38 OS=Homo sapiens OX=9606 GN=RPP38 PE=1 SV=2)

HSP 1 Score: 48.5 bits (114), Expect = 8.5e-05
Identity = 34/112 (30.36%), Postives = 51/112 (45.54%), Query Frame = 0


Query: 56  LKKQFAIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPS 115
           ++KQ AIGVNEVTR LER                     L  +L+     P  +T+H+  
Sbjct: 109 VRKQLAIGVNEVTRALERR-------------------ELLLVLVCKSVKPAMITSHLIQ 168

Query: 116 LAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPINQLIGEILQR 168
           L++SR VP   V     S R+  ++ LK  +A+  K N +     +  I+ R
Sbjct: 169 LSLSRSVPACQV--PRLSERIAPVIGLKCVLALAFKKNTTDFVDEVRAIIPR 199

[Close]

BLAST of Cp4.1LG13g06130 vs. ExPASy Swiss-Prot
Match: Q80UU2 (Ribonuclease P protein subunit p38 OS=Mus musculus OX=10090 GN=Rpp38 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.2e-04
Identity = 33/114 (28.95%), Postives = 52/114 (45.61%), Query Frame = 0


Query: 54  IWLKKQFAIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHV 113
           + ++KQ  IGVNEVTR LER                     L  +L+     P  +T+H+
Sbjct: 102 VHVRKQLVIGVNEVTRALERN-------------------ELLLVLVCKSVKPAIITSHL 161

Query: 114 PSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPINQLIGEILQR 168
             L++SR VP   V   + S R+  ++ LK  +A+G + N       +  I+ R
Sbjct: 162 IQLSLSRTVPACQV--PQLSERIAPVIGLKCVLALGSRKNTRDFADEVEAIIPR 194

[Close]

BLAST of Cp4.1LG13g06130 vs. NCBI nr
Match: XP_023549838.1 (ribonuclease P protein subunit p38 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 330 bits (846), Expect = 6.90e-114
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAETLPEKIWLKKQF 60
           MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAETLPEKIWLKKQF
Sbjct: 1   MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAETLPEKIWLKKQF 60

Query: 61  AIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISR 120
           AIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISR
Sbjct: 61  AIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISR 120

Query: 121 KVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPINQLIGEILQRTT 169
           KVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPINQLIGEILQRTT
Sbjct: 121 KVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPINQLIGEILQRTT 169

[Close]

BLAST of Cp4.1LG13g06130 vs. NCBI nr
Match: KAG6579150.1 (hypothetical protein SDJN03_23598, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016668.1 hypothetical protein SDJN02_21778 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 328 bits (841), Expect = 4.00e-113
Identity = 167/169 (98.82%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAETLPEKIWLKKQF 60
           MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAE+LPEKIWLKKQF
Sbjct: 1   MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQF 60

Query: 61  AIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISR 120
           AIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISR
Sbjct: 61  AIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISR 120

Query: 121 KVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPINQLIGEILQRTT 169
           KVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSP+NQLIGEILQRTT
Sbjct: 121 KVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRTT 169

[Close]

BLAST of Cp4.1LG13g06130 vs. NCBI nr
Match: XP_022938626.1 (ribonuclease P protein subunit p38 [Cucurbita moschata])

HSP 1 Score: 325 bits (834), Expect = 4.67e-112
Identity = 166/169 (98.22%), Postives = 168/169 (99.41%), Query Frame = 0


Query: 1   MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAETLPEKIWLKKQF 60
           MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAE+LPEKIWLKKQF
Sbjct: 1   MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQF 60

Query: 61  AIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISR 120
           AIGVNEVTRVLERMTPS DSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISR
Sbjct: 61  AIGVNEVTRVLERMTPSGDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISR 120

Query: 121 KVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPINQLIGEILQRTT 169
           KVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSP+NQLIGEILQRTT
Sbjct: 121 KVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRTT 169

[Close]

BLAST of Cp4.1LG13g06130 vs. NCBI nr
Match: XP_022993803.1 (ribonuclease P protein subunit p38 [Cucurbita maxima])

HSP 1 Score: 311 bits (797), Expect = 1.98e-106
Identity = 161/169 (95.27%), Postives = 165/169 (97.63%), Query Frame = 0


Query: 1   MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAETLPEKIWLKKQF 60
           MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRAR LNA++LPEKIWLKKQF
Sbjct: 1   MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARFLNADSLPEKIWLKKQF 60

Query: 61  AIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISR 120
           AIGVNEVTRVLERMTPSEDSAR+ NPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISR
Sbjct: 61  AIGVNEVTRVLERMTPSEDSARM-NPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISR 120

Query: 121 KVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPINQLIGEILQRTT 169
           KVPLILVKDKEGSLRLGELVNLKTAIAIGIK NGSP+NQLIGEIL RTT
Sbjct: 121 KVPLILVKDKEGSLRLGELVNLKTAIAIGIKDNGSPVNQLIGEILSRTT 168

[Close]

BLAST of Cp4.1LG13g06130 vs. NCBI nr
Match: XP_038875290.1 (ribonuclease P protein subunit p38 [Benincasa hispida])

HSP 1 Score: 298 bits (762), Expect = 4.43e-101
Identity = 152/169 (89.94%), Postives = 160/169 (94.67%), Query Frame = 0


Query: 1   MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAETLPEKIWLKKQF 60
           MGKKAKSS P AV+QSK NEDSYEGERLDE LQSIQREIK AR LNAE+LPEKIWLKKQF
Sbjct: 1   MGKKAKSSAPDAVLQSKPNEDSYEGERLDEFLQSIQREIKTARFLNAESLPEKIWLKKQF 60

Query: 61  AIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISR 120
           AIGVNEVTRVLERMTPS DSARI+NPNYKACTV+LQA+LLTA+CNPRWLTNHVPSLA+SR
Sbjct: 61  AIGVNEVTRVLERMTPSGDSARIMNPNYKACTVKLQAVLLTANCNPRWLTNHVPSLAMSR 120

Query: 121 KVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPINQLIGEILQRTT 169
           KVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSP+NQLI EILQR T
Sbjct: 121 KVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIDEILQRKT 169

[Close]

BLAST of Cp4.1LG13g06130 vs. ExPASy TrEMBL
Match: A0A6J1FDN9 (ribonuclease P protein subunit p38 OS=Cucurbita moschata OX=3662 GN=LOC111444805 PE=4 SV=1)

HSP 1 Score: 325 bits (834), Expect = 2.26e-112
Identity = 166/169 (98.22%), Postives = 168/169 (99.41%), Query Frame = 0


Query: 1   MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAETLPEKIWLKKQF 60
           MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAE+LPEKIWLKKQF
Sbjct: 1   MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQF 60

Query: 61  AIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISR 120
           AIGVNEVTRVLERMTPS DSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISR
Sbjct: 61  AIGVNEVTRVLERMTPSGDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISR 120

Query: 121 KVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPINQLIGEILQRTT 169
           KVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSP+NQLIGEILQRTT
Sbjct: 121 KVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRTT 169

[Close]

BLAST of Cp4.1LG13g06130 vs. ExPASy TrEMBL
Match: A0A6J1K3C5 (ribonuclease P protein subunit p38 OS=Cucurbita maxima OX=3661 GN=LOC111489702 PE=4 SV=1)

HSP 1 Score: 311 bits (797), Expect = 9.57e-107
Identity = 161/169 (95.27%), Postives = 165/169 (97.63%), Query Frame = 0


Query: 1   MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAETLPEKIWLKKQF 60
           MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRAR LNA++LPEKIWLKKQF
Sbjct: 1   MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARFLNADSLPEKIWLKKQF 60

Query: 61  AIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISR 120
           AIGVNEVTRVLERMTPSEDSAR+ NPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISR
Sbjct: 61  AIGVNEVTRVLERMTPSEDSARM-NPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISR 120

Query: 121 KVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPINQLIGEILQRTT 169
           KVPLILVKDKEGSLRLGELVNLKTAIAIGIK NGSP+NQLIGEIL RTT
Sbjct: 121 KVPLILVKDKEGSLRLGELVNLKTAIAIGIKDNGSPVNQLIGEILSRTT 168

[Close]

BLAST of Cp4.1LG13g06130 vs. ExPASy TrEMBL
Match: A0A6J1CZ90 (ribonuclease P protein subunit p38 OS=Momordica charantia OX=3673 GN=LOC111015626 PE=4 SV=1)

HSP 1 Score: 280 bits (715), Expect = 3.59e-94
Identity = 142/168 (84.52%), Postives = 154/168 (91.67%), Query Frame = 0


Query: 1   MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAETLPEKIWLKKQF 60
           MGKKAKSS    VV+SK ++D YEG+RLDELLQSIQREIKRAR LNAE+LP KIWLKKQF
Sbjct: 1   MGKKAKSSANAQVVRSKLHQDCYEGQRLDELLQSIQREIKRARLLNAESLPAKIWLKKQF 60

Query: 61  AIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISR 120
           A+GVNEVTRVLERMTPS DSARI+NPNYKACTVRLQAILL  DCNPRWLTNH+P+LA+SR
Sbjct: 61  AVGVNEVTRVLERMTPSGDSARIMNPNYKACTVRLQAILLAGDCNPRWLTNHLPTLALSR 120

Query: 121 KVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPINQLIGEILQRT 168
            VPL+L+KDKEGSLRLGELVNLKTAIAIGIKANGS INQLIGEILQ T
Sbjct: 121 NVPLLLMKDKEGSLRLGELVNLKTAIAIGIKANGSLINQLIGEILQGT 168

[Close]

BLAST of Cp4.1LG13g06130 vs. ExPASy TrEMBL
Match: A0A1S3CR39 (ribonuclease P protein subunit p38 isoform X6 OS=Cucumis melo OX=3656 GN=LOC103503720 PE=4 SV=1)

HSP 1 Score: 275 bits (704), Expect = 1.54e-92
Identity = 143/169 (84.62%), Postives = 152/169 (89.94%), Query Frame = 0


Query: 1   MGKKAKSSG-PVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAETLPEKIWLKKQ 60
           MGK  KSS  PVA +QSK  EDSYEGERLDELL SIQREIK AR LNAE+LPEK WLKKQ
Sbjct: 1   MGKNPKSSAHPVATLQSKPYEDSYEGERLDELLLSIQREIKTARGLNAESLPEKFWLKKQ 60

Query: 61  FAIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAIS 120
           FAIGVNEVTR LERMTP  DSAR++NPNYKAC V+LQAILLTA+CNPRWLTNHVP LA+S
Sbjct: 61  FAIGVNEVTRALERMTPCGDSARLMNPNYKACKVKLQAILLTANCNPRWLTNHVPCLAMS 120

Query: 121 RKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPINQLIGEILQRT 168
           RKVPLILVKDKEGSLRLGELVNLKTAIAIGIK+NGSP+NQLI EILQRT
Sbjct: 121 RKVPLILVKDKEGSLRLGELVNLKTAIAIGIKSNGSPVNQLIDEILQRT 169

[Close]

BLAST of Cp4.1LG13g06130 vs. ExPASy TrEMBL
Match: A0A1S3CQV2 (ribonuclease P protein subunit p38 isoform X5 OS=Cucumis melo OX=3656 GN=LOC103503720 PE=4 SV=1)

HSP 1 Score: 271 bits (692), Expect = 1.07e-90
Identity = 143/170 (84.12%), Postives = 152/170 (89.41%), Query Frame = 0


Query: 1   MGKKAKSSG-PVAVVQSKRNEDS-YEGERLDELLQSIQREIKRARCLNAETLPEKIWLKK 60
           MGK  KSS  PVA +QSK  EDS YEGERLDELL SIQREIK AR LNAE+LPEK WLKK
Sbjct: 1   MGKNPKSSAHPVATLQSKPYEDSSYEGERLDELLLSIQREIKTARGLNAESLPEKFWLKK 60

Query: 61  QFAIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAI 120
           QFAIGVNEVTR LERMTP  DSAR++NPNYKAC V+LQAILLTA+CNPRWLTNHVP LA+
Sbjct: 61  QFAIGVNEVTRALERMTPCGDSARLMNPNYKACKVKLQAILLTANCNPRWLTNHVPCLAM 120

Query: 121 SRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPINQLIGEILQRT 168
           SRKVPLILVKDKEGSLRLGELVNLKTAIAIGIK+NGSP+NQLI EILQRT
Sbjct: 121 SRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKSNGSPVNQLIDEILQRT 170

[Close]

BLAST of Cp4.1LG13g06130 vs. TAIR 10
Match: AT4G01790.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 162.9 bits (411), Expect = 2.2e-40
Identity = 86/151 (56.95%), Postives = 107/151 (70.86%), Query Frame = 0


Query: 18  RNEDSYEGERLDELLQSIQREIKRARCLNAETLPEKIWLKKQFAIGVNEVTRVLERMTPS 77
           +  D YEGERL  LL  IQR I+ ++  N  +LPEKIWLKKQ AIG+NEVTRVLERM P+
Sbjct: 21  KESDYYEGERLTHLLDLIQRGIETSKLSNVNSLPEKIWLKKQIAIGINEVTRVLERMNPN 80

Query: 78  EDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISRKVPLILVKD-KEGSLRL 137
             S +  NP       +LQ ++L ADC PR LT H+P+LA SR VP++ V+D K  SLRL
Sbjct: 81  NTSDQQQNPK------QLQVVILVADCKPRMLTKHIPNLAASRNVPVLYVRDNKRASLRL 140

Query: 138 GELVNLKTAIAIGIKANGSPINQLIGEILQR 168
           GELV LKTA+AIGIKA G+ +N L+ +IL R
Sbjct: 141 GELVKLKTALAIGIKARGNDLNLLLKQILPR 165

The following BLAST results are available for this feature:

BLAST of Cp4.1LG13g06130 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q32LC1	5.0e-05	32.14	Ribonuclease P protein subunit p38 OS=Bos taurus OX=9913 GN=RPP38 PE=2 SV=2	[more]
P78345	8.5e-05	30.36	Ribonuclease P protein subunit p38 OS=Homo sapiens OX=9606 GN=RPP38 PE=1 SV=2	[more]
Q80UU2	3.2e-04	28.95	Ribonuclease P protein subunit p38 OS=Mus musculus OX=10090 GN=Rpp38 PE=1 SV=1	[more]

BLAST of Cp4.1LG13g06130 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023549838.1	6.90e-114	100.00	ribonuclease P protein subunit p38 [Cucurbita pepo subsp. pepo]	[more]
KAG6579150.1	4.00e-113	98.82	hypothetical protein SDJN03_23598, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022938626.1	4.67e-112	98.22	ribonuclease P protein subunit p38 [Cucurbita moschata]	[more]
XP_022993803.1	1.98e-106	95.27	ribonuclease P protein subunit p38 [Cucurbita maxima]	[more]
XP_038875290.1	4.43e-101	89.94	ribonuclease P protein subunit p38 [Benincasa hispida]	[more]

BLAST of Cp4.1LG13g06130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FDN9	2.26e-112	98.22	ribonuclease P protein subunit p38 OS=Cucurbita moschata OX=3662 GN=LOC111444805...	[more]
A0A6J1K3C5	9.57e-107	95.27	ribonuclease P protein subunit p38 OS=Cucurbita maxima OX=3661 GN=LOC111489702 P...	[more]
A0A6J1CZ90	3.59e-94	84.52	ribonuclease P protein subunit p38 OS=Momordica charantia OX=3673 GN=LOC11101562...	[more]
A0A1S3CR39	1.54e-92	84.62	ribonuclease P protein subunit p38 isoform X6 OS=Cucumis melo OX=3656 GN=LOC1035...	[more]
A0A1S3CQV2	1.07e-90	84.12	ribonuclease P protein subunit p38 isoform X5 OS=Cucumis melo OX=3656 GN=LOC1035...	[more]

BLAST of Cp4.1LG13g06130 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G01790.1	2.2e-40	56.95	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 28..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR47903	OS07G0636400 PROTEIN	coord: 13..168
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 33..168 e-value: 3.9E-21 score: 76.8
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 31..166
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 95..154 e-value: 1.8E-5 score: 24.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG13g06130.1	Cp4.1LG13g06130.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0043232	intracellular non-membrane-bounded organelle