Cp4.1LG12g11640 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG12g11640
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Cyclin
Location	Cp4.1LG12: 8541651 .. 8544193 (+)
RNA-Seq Expression	Cp4.1LG12g11640
Synteny	Cp4.1LG12g11640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATTGTTGTTTATCCTTCTTCCATCTCATTCAGATTCTCTTCTCCTTTTCCCTCTCATGTAGCGCTCGAACTAGATCCCATTGCTATCTCCCGTTTTCTCTCTTCTGTAAGTATGTTCTTCCTCGAATCTACTCATGGATTGCTTCTTTTGTTCTTATCGTATCGGATTTTATTTTGATTTTAGTTGAAATTGTTGGATTCGTTGTTGTTTCTGTTTATAGGATCTGGATTTTGCGTGAATTGAATTTATTTCAACTTTTTAGGGCTGAAGTTACTCTGTGAAACTTGGATTTGGTTTTGGATTAGACTGTTCTGTTTTGGCTTGTTGAGTTGTGTGTTGATTCTTGTTAACTTCATGAATTTGAGTTGATTCATTATTGAACCTTTTCTAGTACGAGAAAGTACACTGGAGATGATCTTGTTCCCTAATTTTTTTCTTCTTGTTCTTGAAGACGAACGTTGAACTGGACCTGCTTATGTGTGATTTTGAATTGAACTCAAGAACTTATTCCTGTTGGATAAACTTATGAACTTAAGAAAAAGGAGCTTGGAACCTCTAGGTTGAAACCTTAATAACTTAATATTAAGGTCATCCACTTAGATCTTTCAATCTGCAGGGTTTTCTTGTGATTCTAGATAACTTGCTGTCATTTTGACTTAGTTTACGCCAAATGAATTACGTTGTTTGATTAGTTTCGAGTCGTCTGTCCTTTCCTCTCGTACTAGGGAAAGGTTCTCTCCATGCTCTAATGCCCTCACCGGATATGGACCGAATTGTCTCACGATGTTCTGAACCTAACTCACGTACTTTAATGGGCTAACAACCCAACCCTTGGAACATATTGTTATAAATCACTAACCTCCACAATAGCATGATATTGTCCACTTTGAGCATAAGCTCTTATGATTTTACTTTTGGTTTCCCCAAAATGCCTCATACCAATGGATACGTATGCGTCCTTACTTATAAACTCATGATCAACTTCTTAATTAGTCGATGTGGGACTCCTCTCCCAACCGTTCTCAACATATACTATAGCCTCAGGTGGCGAAGAGCCGACATCGAGGTGCTAAACCTTCACGTCGATGTGAGCTCTAGGGGAAGATCAAAATGTTATCCCTAGAGTAACTTTTATCCATTGAGCAACAACCCTTCCACGAGGCACTATTGGATCACTAAGGCCGACTTTTGCCCCTTCTTGATGGATGAGTCTTGTAGTCAAGCTCCCTCTTACCTTTGCACTCGAGGGTCAATCTCCGTTTGTCTCGAGGAAACCTTTGCATGCCTGTGGTGAAAACCGAAAATTCTCGTCCGTCCTTGATTTCGAAGTGTTTCCTCTGCTTATGATTATTCAAATATATATCAGTGAACTCTCTCCAGCATTGCTGTCTTGACTTACTTCAATCACTGAATTTATCAGAGCTTTACCTTTCTCTTACAATATGTTACTATGCAGCTTGGAGATGGCAGCTTCAGAACCCGGAACCGAAGACATTTGTTCAGATATTTACGTTAATCTCGGGCTCAAGTCATTGCGCAAAGGAATCCGAAGAAATCCTCGGGTTCTCACGCTTCTTTCTTCACTTTTGGAACGCTCTGTTAAAAAAAATGAATTGCTAATGGAGGCCACACAAGTCAAAGATGCTCGTACGATGTTTCATGGTCTTCGAGCTCCCACCCTGAGTATTCGATGCTATATCGATCGCATCTTCAAGTACTTCGGCTGCAGCCCATCATGCTTCGTCATTGCGAATATCTATGTCGATCGATTTCTCAAGTGCACGGAGATTCAGTTAACTTCTCTTAACGTTCATCGGCTGCTGATAACGAGCATAATGCTGGCTGCTAAGTTCATCGACGACTCGTAAGCACCACCCTATAAATGATTCTATTTTGTGATATACATGCAACTCAATTTCGTTTAGAAATTATTTCCAATCTATCCTTTATGTTCTTGTGACTTCCTCGTCTTCATTTAAGCATTGGTGAGACTCCATTGTTGCAGTAGAAGAGCACTGATTGAATTATGTTCTATATATGTTTATAAATTGAATGCTAGTTTTGCGAGTAATAGCGGGGTTTTTTTTTTATTACATACGAATGAGAATGAAGTGACTTGAACATATGATTCGGGGATATATCGGTGGCTAACTGCTTGAACTATGTTCTAGTCGTAATAATTCTTCTAAGATTAAGAATCATACTGTGAGATTCCACGTCGGTTGAAGAAGGGAACAAACCATTTCTTCTAAGGGTGTGGGAAGCCTCTTTCTAGCATGTGCATTGTTATAATCGTGAAGCTGACGACGACGATACGTAACGAGCTAAAGCGGACAATATCTATTAATGGTGGATCTGGACTATTACACGTAAGATATTGAACTAACTGAAGTGACATACAAACCGAATCCAACTGGTCCATACCAAACTAAACCAAGTAAGCAATTTGGTTTGGTTTGGTAAAGAAAATGATGAACTCACAAGTCATACCCAAGCCATCTCGATGATAATTGATTAATTTTATTTTTATAGGAATTAA

mRNA sequence

ATGCATTGGCTGAACTTGGAGATGGCAGCTTCAGAACCCGGAACCGAAGACATTTGTTCAGATATTTACGTTAATCTCGGGCTCAAGTCATTGCGCAAAGGAATCCGAAGAAATCCTCGGGTTCTCACGCTTCTTTCTTCACTTTTGGAACGCTCTGTTAAAAAAAATGAATTGCTAATGGAGGCCACACAAGTCAAAGATGCTCGTACGATGTTTCATGGTCTTCGAGCTCCCACCCTGAGTATTCGATGCTATATCGATCGCATCTTCAAGTACTTCGGCTGCAGCCCATCATGCTTCGTCATTGCGAATATCTATGTCGATCGATTTCTCAAGTGCACGGAGATTCAGTTAACTTCTCTTAACGTTCATCGGCTGCTGATAACGAGCATAATGCTGGCTGCTAAGTTCATCGACGACTCGAATTAA

Coding sequence (CDS)

ATGCATTGGCTGAACTTGGAGATGGCAGCTTCAGAACCCGGAACCGAAGACATTTGTTCAGATATTTACGTTAATCTCGGGCTCAAGTCATTGCGCAAAGGAATCCGAAGAAATCCTCGGGTTCTCACGCTTCTTTCTTCACTTTTGGAACGCTCTGTTAAAAAAAATGAATTGCTAATGGAGGCCACACAAGTCAAAGATGCTCGTACGATGTTTCATGGTCTTCGAGCTCCCACCCTGAGTATTCGATGCTATATCGATCGCATCTTCAAGTACTTCGGCTGCAGCCCATCATGCTTCGTCATTGCGAATATCTATGTCGATCGATTTCTCAAGTGCACGGAGATTCAGTTAACTTCTCTTAACGTTCATCGGCTGCTGATAACGAGCATAATGCTGGCTGCTAAGTTCATCGACGACTCGAATTAA

Protein sequence

MHWLNLEMAASEPGTEDICSDIYVNLGLKSLRKGIRRNPRVLTLLSSLLERSVKKNELLMEATQVKDARTMFHGLRAPTLSIRCYIDRIFKYFGCSPSCFVIANIYVDRFLKCTEIQLTSLNVHRLLITSIMLAAKFIDDSN

Homology

[Close]

BLAST of Cp4.1LG12g11640 vs. ExPASy Swiss-Prot
Match: Q75HV0 (Cyclin-P3-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCP3-1 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.9e-29
Identity = 65/121 (53.72%), Postives = 94/121 (77.69%), Query Frame = 0


Query: 23  YVNLGL--KSLRKGIRRNPRVLTLLSSLLERSVKKNELLMEATQVKDARTMFHGLRAPTL 82
           Y++LGL     +K     P+VL LL++ L+RSV+KNE L+++ ++KD+ T+FHG RAP L
Sbjct: 18  YLSLGLTVSQSKKNNTEYPKVLLLLAAYLDRSVQKNEDLLDSNKIKDSSTIFHGHRAPDL 77

Query: 83  SIRCYIDRIFKYFGCSPSCFVIANIYVDRFLKCTEIQLTSLNVHRLLITSIMLAAKFIDD 142
           SI+ Y +RIFKY  CSPSCFV+A IY++R+L+   + +TSL+VHRLLITS+++AAKF DD
Sbjct: 78  SIKLYAERIFKYSECSPSCFVLALIYMERYLQQPHVYMTSLSVHRLLITSVVVAAKFTDD 137

[Close]

BLAST of Cp4.1LG12g11640 vs. ExPASy Swiss-Prot
Match: Q8LB60 (Cyclin-U3-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU3-1 PE=1 SV=2)

HSP 1 Score: 114.0 bits (284), Expect = 1.4e-24
Identity = 66/135 (48.89%), Postives = 86/135 (63.70%), Query Frame = 0


Query: 6   LEMAASEPGTEDICSDIYVNLGLKSLRKGIRRNPRVLTLLSSLLERSVKKNELLMEATQV 65
           ++  A++P   D  SD+Y+ LGL    K +++ P VL+ LSS LERS+  N         
Sbjct: 1   MDSLATDPAFID--SDVYLRLGLIIEGKRLKKPPTVLSRLSSSLERSLLLNHDDKILLGS 60

Query: 66  KDARTMFHGLRAPTLSIRCYIDRIFKYFGCSPSCFVIANIYVDRFLKCTEIQLTSLNVHR 125
            D+ T+F G   P +SI  Y+DRIFKY  CSPSCFVIA+IY+D FL  T   L  LNVHR
Sbjct: 61  PDSVTVFDGRSPPEISIAHYLDRIFKYSCCSPSCFVIAHIYIDHFLHKTRALLKPLNVHR 120

Query: 126 LLITSIMLAAKFIDD 141
           L+IT++MLAAK  DD
Sbjct: 121 LIITTVMLAAKVFDD 133

[Close]

BLAST of Cp4.1LG12g11640 vs. ExPASy Swiss-Prot
Match: O80513 (Cyclin-U4-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-1 PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.9e-22
Identity = 51/102 (50.00%), Postives = 72/102 (70.59%), Query Frame = 0


Query: 40  RVLTLLSSLLERSVKKNELLMEATQVKDARTMFHGLRAPTLSIRCYIDRIFKYFGCSPSC 99
           +++  LSSLLER  + N+L           ++FHGL  PT++I+ Y++RIFKY  CSPSC
Sbjct: 12  KLIAFLSSLLERVAESNDLTRRVATQSQRVSVFHGLSRPTITIQSYLERIFKYANCSPSC 71

Query: 100 FVIANIYVDRFL-KCTEIQLTSLNVHRLLITSIMLAAKFIDD 141
           FV+A +Y+DRF  +   + + S NVHRLLITS+M+AAKF+DD
Sbjct: 72  FVVAYVYLDRFTHRQPSLPINSFNVHRLLITSVMVAAKFLDD 113

[Close]

BLAST of Cp4.1LG12g11640 vs. ExPASy Swiss-Prot
Match: Q9LJ45 (Cyclin-U1-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU1-1 PE=1 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 7.9e-20
Identity = 50/104 (48.08%), Postives = 74/104 (71.15%), Query Frame = 0


Query: 39  PRVLTLLSSLLERSVKKNELLMEATQ-VKDARTMFHGLRAPTLSIRCYIDRIFKYFGCSP 98
           PRVLT++S ++E+ V +NE L + T+    +   FHG+RAP++SI  Y++RI+KY  CSP
Sbjct: 25  PRVLTIISHVMEKLVARNEWLAKQTKGFGKSLEAFHGVRAPSISIAKYLERIYKYTKCSP 84

Query: 99  SCFVIANIYVDRFL-KCTEIQLTSLNVHRLLITSIMLAAKFIDD 141
           +CFV+  +Y+DR   K     + SLNVHRLL+T +M+AAK +DD
Sbjct: 85  ACFVVGYVYIDRLAHKHPGSLVVSLNVHRLLVTCVMIAAKILDD 128

[Close]

BLAST of Cp4.1LG12g11640 vs. ExPASy Swiss-Prot
Match: Q7XC35 (Cyclin-P4-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCP4-1 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.3e-19
Identity = 51/106 (48.11%), Postives = 73/106 (68.87%), Query Frame = 0


Query: 39  PRVLTLLSSLLERSVKKNELLMEATQVKD---ARTMFHGLRAPTLSIRCYIDRIFKYFGC 98
           PRV+ +LSSLL+R  ++N+    A  V +   A + F GL  P +SI  Y++RIF++  C
Sbjct: 11  PRVVAILSSLLQRVAERNDAAAAAAAVGEEAAAVSAFQGLTKPAISIGGYLERIFRFANC 70

Query: 99  SPSCFVIANIYVDRFL-KCTEIQLTSLNVHRLLITSIMLAAKFIDD 141
           SPSC+V+A IY+DRFL +   + + S NVHRLLITS++ A KF+DD
Sbjct: 71  SPSCYVVAYIYLDRFLRRRPALAVDSFNVHRLLITSVLTAVKFVDD 116

[Close]

BLAST of Cp4.1LG12g11640 vs. NCBI nr
Match: XP_023547550.1 (cyclin-P3-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 267 bits (683), Expect = 1.93e-89
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 5   NLEMAASEPGTEDICSDIYVNLGLKSLRKGIRRNPRVLTLLSSLLERSVKKNELLMEATQ 64
           NLEMAASEPGTEDICSDIYVNLGLKSLRKGIRRNPRVLTLLSSLLERSVKKNELLMEATQ
Sbjct: 38  NLEMAASEPGTEDICSDIYVNLGLKSLRKGIRRNPRVLTLLSSLLERSVKKNELLMEATQ 97

Query: 65  VKDARTMFHGLRAPTLSIRCYIDRIFKYFGCSPSCFVIANIYVDRFLKCTEIQLTSLNVH 124
           VKDARTMFHGLRAPTLSIRCYIDRIFKYFGCSPSCFVIANIYVDRFLKCTEIQLTSLNVH
Sbjct: 98  VKDARTMFHGLRAPTLSIRCYIDRIFKYFGCSPSCFVIANIYVDRFLKCTEIQLTSLNVH 157

Query: 125 RLLITSIMLAAKFIDDS 141
           RLLITSIMLAAKFIDDS
Sbjct: 158 RLLITSIMLAAKFIDDS 174

[Close]

BLAST of Cp4.1LG12g11640 vs. NCBI nr
Match: KAG7014439.1 (Cyclin-P3-1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 261 bits (668), Expect = 1.71e-86
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 8   MAASEPGTEDICSDIYVNLGLKSLRKGIRRNPRVLTLLSSLLERSVKKNELLMEATQVKD 67
           MAASEPGTEDICSDIYVNLGLKSLRKGIRRNPRVLTLLSSLLERSVKKNELLMEATQVKD
Sbjct: 1   MAASEPGTEDICSDIYVNLGLKSLRKGIRRNPRVLTLLSSLLERSVKKNELLMEATQVKD 60

Query: 68  ARTMFHGLRAPTLSIRCYIDRIFKYFGCSPSCFVIANIYVDRFLKCTEIQLTSLNVHRLL 127
           ARTMFHGLRAPTLSIRCYIDRIFKYFGCSPSCFVIANIYVDRFLKCTEIQLTSLNVHRLL
Sbjct: 61  ARTMFHGLRAPTLSIRCYIDRIFKYFGCSPSCFVIANIYVDRFLKCTEIQLTSLNVHRLL 120

Query: 128 ITSIMLAAKFIDDS 141
           ITSIMLAAKFIDDS
Sbjct: 121 ITSIMLAAKFIDDS 134

[Close]

BLAST of Cp4.1LG12g11640 vs. NCBI nr
Match: XP_022954187.1 (cyclin-P3-1 [Cucurbita moschata] >XP_022954188.1 cyclin-P3-1 [Cucurbita moschata])

HSP 1 Score: 261 bits (667), Expect = 2.43e-86
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 8   MAASEPGTEDICSDIYVNLGLKSLRKGIRRNPRVLTLLSSLLERSVKKNELLMEATQVKD 67
           MAASEPGTEDICSDIYVNLGLKSLRKGIRRNPR+LTLLSSLLERSVKKNELLMEATQVKD
Sbjct: 1   MAASEPGTEDICSDIYVNLGLKSLRKGIRRNPRILTLLSSLLERSVKKNELLMEATQVKD 60

Query: 68  ARTMFHGLRAPTLSIRCYIDRIFKYFGCSPSCFVIANIYVDRFLKCTEIQLTSLNVHRLL 127
           ARTMFHGLRAPTLSIRCYIDRIFKYFGCSPSCFVIANIYVDRFLKCTEIQLTSLNVHRLL
Sbjct: 61  ARTMFHGLRAPTLSIRCYIDRIFKYFGCSPSCFVIANIYVDRFLKCTEIQLTSLNVHRLL 120

Query: 128 ITSIMLAAKFIDDS 141
           ITSIMLAAKFIDDS
Sbjct: 121 ITSIMLAAKFIDDS 134

[Close]

BLAST of Cp4.1LG12g11640 vs. NCBI nr
Match: KAG6575905.1 (Cyclin-P3-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 265 bits (678), Expect = 1.49e-84
Identity = 137/138 (99.28%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 4   LNLEMAASEPGTEDICSDIYVNLGLKSLRKGIRRNPRVLTLLSSLLERSVKKNELLMEAT 63
           L LEMAASEPGTEDICSDIYVNLGLKSLRKGIRRNPRVLTLLSSLLERSVKKNELLMEAT
Sbjct: 257 LLLEMAASEPGTEDICSDIYVNLGLKSLRKGIRRNPRVLTLLSSLLERSVKKNELLMEAT 316

Query: 64  QVKDARTMFHGLRAPTLSIRCYIDRIFKYFGCSPSCFVIANIYVDRFLKCTEIQLTSLNV 123
           QVKDARTMFHGLRAPTLSIRCYIDRIFKYFGCSPSCFVIANIYVDRFLKCTEIQLTSLNV
Sbjct: 317 QVKDARTMFHGLRAPTLSIRCYIDRIFKYFGCSPSCFVIANIYVDRFLKCTEIQLTSLNV 376

Query: 124 HRLLITSIMLAAKFIDDS 141
           HRLLITSIMLAAKFIDDS
Sbjct: 377 HRLLITSIMLAAKFIDDS 394

[Close]

BLAST of Cp4.1LG12g11640 vs. NCBI nr
Match: XP_022992552.1 (cyclin-P3-1-like [Cucurbita maxima] >XP_022992553.1 cyclin-P3-1-like [Cucurbita maxima])

HSP 1 Score: 255 bits (652), Expect = 4.66e-84
Identity = 132/134 (98.51%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 8   MAASEPGTEDICSDIYVNLGLKSLRKGIRRNPRVLTLLSSLLERSVKKNELLMEATQVKD 67
           MAASE GTEDICSDIYVNLGLKSLRKGIRRNPRVLTLLSSLLERSVKKNELLMEATQVKD
Sbjct: 1   MAASELGTEDICSDIYVNLGLKSLRKGIRRNPRVLTLLSSLLERSVKKNELLMEATQVKD 60

Query: 68  ARTMFHGLRAPTLSIRCYIDRIFKYFGCSPSCFVIANIYVDRFLKCTEIQLTSLNVHRLL 127
           ARTMFHGLRAPTLSIRCYIDRIFKYFGCSPSCFVIANIYVDRFLKC EIQLTSLNVHRLL
Sbjct: 61  ARTMFHGLRAPTLSIRCYIDRIFKYFGCSPSCFVIANIYVDRFLKCMEIQLTSLNVHRLL 120

Query: 128 ITSIMLAAKFIDDS 141
           ITSIMLAAKFIDDS
Sbjct: 121 ITSIMLAAKFIDDS 134

[Close]

BLAST of Cp4.1LG12g11640 vs. ExPASy TrEMBL
Match: A0A6J1GQB2 (Cyclin OS=Cucurbita moschata OX=3662 GN=LOC111456524 PE=3 SV=1)

HSP 1 Score: 261 bits (667), Expect = 1.17e-86
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 8   MAASEPGTEDICSDIYVNLGLKSLRKGIRRNPRVLTLLSSLLERSVKKNELLMEATQVKD 67
           MAASEPGTEDICSDIYVNLGLKSLRKGIRRNPR+LTLLSSLLERSVKKNELLMEATQVKD
Sbjct: 1   MAASEPGTEDICSDIYVNLGLKSLRKGIRRNPRILTLLSSLLERSVKKNELLMEATQVKD 60

Query: 68  ARTMFHGLRAPTLSIRCYIDRIFKYFGCSPSCFVIANIYVDRFLKCTEIQLTSLNVHRLL 127
           ARTMFHGLRAPTLSIRCYIDRIFKYFGCSPSCFVIANIYVDRFLKCTEIQLTSLNVHRLL
Sbjct: 61  ARTMFHGLRAPTLSIRCYIDRIFKYFGCSPSCFVIANIYVDRFLKCTEIQLTSLNVHRLL 120

Query: 128 ITSIMLAAKFIDDS 141
           ITSIMLAAKFIDDS
Sbjct: 121 ITSIMLAAKFIDDS 134

[Close]

BLAST of Cp4.1LG12g11640 vs. ExPASy TrEMBL
Match: A0A6J1JZK0 (Cyclin OS=Cucurbita maxima OX=3661 GN=LOC111488841 PE=3 SV=1)

HSP 1 Score: 255 bits (652), Expect = 2.26e-84
Identity = 132/134 (98.51%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 8   MAASEPGTEDICSDIYVNLGLKSLRKGIRRNPRVLTLLSSLLERSVKKNELLMEATQVKD 67
           MAASE GTEDICSDIYVNLGLKSLRKGIRRNPRVLTLLSSLLERSVKKNELLMEATQVKD
Sbjct: 1   MAASELGTEDICSDIYVNLGLKSLRKGIRRNPRVLTLLSSLLERSVKKNELLMEATQVKD 60

Query: 68  ARTMFHGLRAPTLSIRCYIDRIFKYFGCSPSCFVIANIYVDRFLKCTEIQLTSLNVHRLL 127
           ARTMFHGLRAPTLSIRCYIDRIFKYFGCSPSCFVIANIYVDRFLKC EIQLTSLNVHRLL
Sbjct: 61  ARTMFHGLRAPTLSIRCYIDRIFKYFGCSPSCFVIANIYVDRFLKCMEIQLTSLNVHRLL 120

Query: 128 ITSIMLAAKFIDDS 141
           ITSIMLAAKFIDDS
Sbjct: 121 ITSIMLAAKFIDDS 134

[Close]

BLAST of Cp4.1LG12g11640 vs. ExPASy TrEMBL
Match: A0A0A0K7D6 (Cyclin OS=Cucumis sativus OX=3659 GN=Csa_7G389460 PE=3 SV=1)

HSP 1 Score: 251 bits (640), Expect = 1.46e-82
Identity = 128/134 (95.52%), Postives = 131/134 (97.76%), Query Frame = 0


Query: 8   MAASEPGTEDICSDIYVNLGLKSLRKGIRRNPRVLTLLSSLLERSVKKNELLMEATQVKD 67
           MAASE   ED+CSDIY+NLGLKSLRKGIR+NPRVLTLLSSLLERSVKKNELLMEATQVKD
Sbjct: 1   MAASELEVEDVCSDIYINLGLKSLRKGIRKNPRVLTLLSSLLERSVKKNELLMEATQVKD 60

Query: 68  ARTMFHGLRAPTLSIRCYIDRIFKYFGCSPSCFVIANIYVDRFLKCTEIQLTSLNVHRLL 127
           ARTMFHGLRAPTLSIRCYIDRIFKYFGCSPSCFVIANIYVDRFLKCTEIQLTSLNVHRLL
Sbjct: 61  ARTMFHGLRAPTLSIRCYIDRIFKYFGCSPSCFVIANIYVDRFLKCTEIQLTSLNVHRLL 120

Query: 128 ITSIMLAAKFIDDS 141
           ITSIMLAAKFIDDS
Sbjct: 121 ITSIMLAAKFIDDS 134

[Close]

BLAST of Cp4.1LG12g11640 vs. ExPASy TrEMBL
Match: A0A1S3BRA2 (Cyclin OS=Cucumis melo OX=3656 GN=LOC103492671 PE=3 SV=1)

HSP 1 Score: 248 bits (633), Expect = 1.70e-81
Identity = 127/134 (94.78%), Postives = 130/134 (97.01%), Query Frame = 0


Query: 8   MAASEPGTEDICSDIYVNLGLKSLRKGIRRNPRVLTLLSSLLERSVKKNELLMEATQVKD 67
           MAASE   ED+CSDIYVNLGLKSL KGIR+NPRVLTLLSSLLERSVKKNELLMEATQVKD
Sbjct: 1   MAASELEVEDVCSDIYVNLGLKSLHKGIRKNPRVLTLLSSLLERSVKKNELLMEATQVKD 60

Query: 68  ARTMFHGLRAPTLSIRCYIDRIFKYFGCSPSCFVIANIYVDRFLKCTEIQLTSLNVHRLL 127
           ARTMFHGLRAPTLSIRCY+DRIFKYFGCSPSCFVIANIYVDRFLKCTEIQLTSLNVHRLL
Sbjct: 61  ARTMFHGLRAPTLSIRCYMDRIFKYFGCSPSCFVIANIYVDRFLKCTEIQLTSLNVHRLL 120

Query: 128 ITSIMLAAKFIDDS 141
           ITSIMLAAKFIDDS
Sbjct: 121 ITSIMLAAKFIDDS 134

[Close]

BLAST of Cp4.1LG12g11640 vs. ExPASy TrEMBL
Match: A0A5D3D4N5 (Cyclin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2032G00210 PE=3 SV=1)

HSP 1 Score: 246 bits (629), Expect = 6.90e-81
Identity = 126/134 (94.03%), Postives = 130/134 (97.01%), Query Frame = 0


Query: 8   MAASEPGTEDICSDIYVNLGLKSLRKGIRRNPRVLTLLSSLLERSVKKNELLMEATQVKD 67
           MAASE   ED+CSDIYVNLGLKSL KGIR+NPRVLTLLSSLLERSVKKNELLMEATQVKD
Sbjct: 1   MAASELEVEDVCSDIYVNLGLKSLHKGIRKNPRVLTLLSSLLERSVKKNELLMEATQVKD 60

Query: 68  ARTMFHGLRAPTLSIRCYIDRIFKYFGCSPSCFVIANIYVDRFLKCTEIQLTSLNVHRLL 127
           ARTMFHGLRAPTLSI+CY+DRIFKYFGCSPSCFVIANIYVDRFLKCTEIQLTSLNVHRLL
Sbjct: 61  ARTMFHGLRAPTLSIQCYMDRIFKYFGCSPSCFVIANIYVDRFLKCTEIQLTSLNVHRLL 120

Query: 128 ITSIMLAAKFIDDS 141
           ITSIMLAAKFIDDS
Sbjct: 121 ITSIMLAAKFIDDS 134

[Close]

BLAST of Cp4.1LG12g11640 vs. TAIR 10
Match: AT3G63120.1 (cyclin p1;1 )

HSP 1 Score: 114.0 bits (284), Expect = 9.9e-26
Identity = 66/135 (48.89%), Postives = 86/135 (63.70%), Query Frame = 0


Query: 6   LEMAASEPGTEDICSDIYVNLGLKSLRKGIRRNPRVLTLLSSLLERSVKKNELLMEATQV 65
           ++  A++P   D  SD+Y+ LGL    K +++ P VL+ LSS LERS+  N         
Sbjct: 1   MDSLATDPAFID--SDVYLRLGLIIEGKRLKKPPTVLSRLSSSLERSLLLNHDDKILLGS 60

Query: 66  KDARTMFHGLRAPTLSIRCYIDRIFKYFGCSPSCFVIANIYVDRFLKCTEIQLTSLNVHR 125
            D+ T+F G   P +SI  Y+DRIFKY  CSPSCFVIA+IY+D FL  T   L  LNVHR
Sbjct: 61  PDSVTVFDGRSPPEISIAHYLDRIFKYSCCSPSCFVIAHIYIDHFLHKTRALLKPLNVHR 120

Query: 126 LLITSIMLAAKFIDD 141
           L+IT++MLAAK  DD
Sbjct: 121 LIITTVMLAAKVFDD 133

[Close]

BLAST of Cp4.1LG12g11640 vs. TAIR 10
Match: AT2G44740.1 (cyclin p4;1 )

HSP 1 Score: 105.5 bits (262), Expect = 3.5e-23
Identity = 51/102 (50.00%), Postives = 72/102 (70.59%), Query Frame = 0


Query: 40  RVLTLLSSLLERSVKKNELLMEATQVKDARTMFHGLRAPTLSIRCYIDRIFKYFGCSPSC 99
           +++  LSSLLER  + N+L           ++FHGL  PT++I+ Y++RIFKY  CSPSC
Sbjct: 12  KLIAFLSSLLERVAESNDLTRRVATQSQRVSVFHGLSRPTITIQSYLERIFKYANCSPSC 71

Query: 100 FVIANIYVDRFL-KCTEIQLTSLNVHRLLITSIMLAAKFIDD 141
           FV+A +Y+DRF  +   + + S NVHRLLITS+M+AAKF+DD
Sbjct: 72  FVVAYVYLDRFTHRQPSLPINSFNVHRLLITSVMVAAKFLDD 113

[Close]

BLAST of Cp4.1LG12g11640 vs. TAIR 10
Match: AT3G21870.1 (cyclin p2;1 )

HSP 1 Score: 98.2 bits (243), Expect = 5.6e-21
Identity = 50/104 (48.08%), Postives = 74/104 (71.15%), Query Frame = 0


Query: 39  PRVLTLLSSLLERSVKKNELLMEATQ-VKDARTMFHGLRAPTLSIRCYIDRIFKYFGCSP 98
           PRVLT++S ++E+ V +NE L + T+    +   FHG+RAP++SI  Y++RI+KY  CSP
Sbjct: 25  PRVLTIISHVMEKLVARNEWLAKQTKGFGKSLEAFHGVRAPSISIAKYLERIYKYTKCSP 84

Query: 99  SCFVIANIYVDRFL-KCTEIQLTSLNVHRLLITSIMLAAKFIDD 141
           +CFV+  +Y+DR   K     + SLNVHRLL+T +M+AAK +DD
Sbjct: 85  ACFVVGYVYIDRLAHKHPGSLVVSLNVHRLLVTCVMIAAKILDD 128

[Close]

BLAST of Cp4.1LG12g11640 vs. TAIR 10
Match: AT3G05327.1 (Cyclin family protein )

HSP 1 Score: 96.7 bits (239), Expect = 1.6e-20
Identity = 55/107 (51.40%), Postives = 74/107 (69.16%), Query Frame = 0


Query: 39  PRVLTLLSSLLERSVKKNELLMEATQVK-DARTMFHGLRAPTLSIRCYIDRIFKYFGCSP 98
           PRV+TLL+S LE+ ++KN+        K D  TMFHG +AP+LSI  Y +RI +Y  CSP
Sbjct: 31  PRVITLLASTLEKMIQKNKKKFHTRHNKADEITMFHGSKAPSLSIYRYTERIHRYAQCSP 90

Query: 99  SCFVIANIYVDRFLK-----CTEIQLTSLNVHRLLITSIMLAAKFID 140
            CFV A  Y+ R+L+      T  +LTSLNVHRLLITS+++AAKF++
Sbjct: 91  VCFVAAFAYILRYLQRPEATSTARRLTSLNVHRLLITSLLVAAKFLE 137

[Close]

BLAST of Cp4.1LG12g11640 vs. TAIR 10
Match: AT5G07450.1 (cyclin p4;3 )

HSP 1 Score: 90.9 bits (224), Expect = 8.9e-19
Identity = 46/103 (44.66%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 39  PRVLTLLSSLLERSVKKNELLMEATQVKDARTMFHGLRAPTLSIRCYIDRIFKYFGCSPS 98
           P V+T +SSLL+R  + N+ L    +     + F+ +  P++SIR Y++RIFKY  CS S
Sbjct: 21  PNVITAMSSLLQRVSETNDDLSRPFREHKRISAFNAVTKPSISIRSYMERIFKYADCSDS 80

Query: 99  CFVIANIYVDRFL-KCTEIQLTSLNVHRLLITSIMLAAKFIDD 141
           C+++A IY+DRF+ K   + + S NVHRL+ITS++++AKF+DD
Sbjct: 81  CYIVAYIYLDRFIQKQPLLPIDSSNVHRLIITSVLVSAKFMDD 123

The following BLAST results are available for this feature:

BLAST of Cp4.1LG12g11640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q75HV0	1.9e-29	53.72	Cyclin-P3-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCP3-1 PE=3 SV=1	[more]
Q8LB60	1.4e-24	48.89	Cyclin-U3-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU3-1 PE=1 SV=2	[more]
O80513	4.9e-22	50.00	Cyclin-U4-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-1 PE=1 SV=1	[more]
Q9LJ45	7.9e-20	48.08	Cyclin-U1-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU1-1 PE=1 SV=1	[more]
Q7XC35	2.3e-19	48.11	Cyclin-P4-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCP4-1 PE=2 SV=1	[more]

BLAST of Cp4.1LG12g11640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023547550.1	1.93e-89	100.00	cyclin-P3-1-like [Cucurbita pepo subsp. pepo]	[more]
KAG7014439.1	1.71e-86	100.00	Cyclin-P3-1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022954187.1	2.43e-86	99.25	cyclin-P3-1 [Cucurbita moschata] >XP_022954188.1 cyclin-P3-1 [Cucurbita moschata...	[more]
KAG6575905.1	1.49e-84	99.28	Cyclin-P3-1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022992552.1	4.66e-84	98.51	cyclin-P3-1-like [Cucurbita maxima] >XP_022992553.1 cyclin-P3-1-like [Cucurbita ...	[more]

BLAST of Cp4.1LG12g11640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GQB2	1.17e-86	99.25	Cyclin OS=Cucurbita moschata OX=3662 GN=LOC111456524 PE=3 SV=1	[more]
A0A6J1JZK0	2.26e-84	98.51	Cyclin OS=Cucurbita maxima OX=3661 GN=LOC111488841 PE=3 SV=1	[more]
A0A0A0K7D6	1.46e-82	95.52	Cyclin OS=Cucumis sativus OX=3659 GN=Csa_7G389460 PE=3 SV=1	[more]
A0A1S3BRA2	1.70e-81	94.78	Cyclin OS=Cucumis melo OX=3656 GN=LOC103492671 PE=3 SV=1	[more]
A0A5D3D4N5	6.90e-81	94.03	Cyclin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2032G00210 PE=3 S...	[more]

BLAST of Cp4.1LG12g11640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63120.1	9.9e-26	48.89	cyclin p1;1	[more]
AT2G44740.1	3.5e-23	50.00	cyclin p4;1	[more]
AT3G21870.1	5.6e-21	48.08	cyclin p2;1	[more]
AT3G05327.1	1.6e-20	51.40	Cyclin family protein	[more]
AT5G07450.1	8.9e-19	44.66	cyclin p4;3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013922	Cyclin PHO80-like	PFAM	PF08613	Cyclin	coord: 62..141 e-value: 2.4E-15 score: 57.3
None	No IPR available	GENE3D	1.10.472.10		coord: 36..142 e-value: 7.9E-29 score: 102.6
None	No IPR available	PANTHER	PTHR15615	UNCHARACTERIZED	coord: 18..141
None	No IPR available	PANTHER	PTHR15615:SF80	CYCLIN	coord: 18..141
IPR013763	Cyclin-like	CDD	cd00043	CYCLIN	coord: 85..141 e-value: 0.00368337 score: 32.5957
IPR036915	Cyclin-like superfamily	SUPERFAMILY	47954	Cyclin-like	coord: 85..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG12g11640.1	Cp4.1LG12g11640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity
molecular_function	GO:0019901	protein kinase binding