Cp4.1LG12g10580 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AACCGCCATTAATGCGTGAAGAAAGGATGAACCGCCATTAATGAGTGAAGAAGAATTAATGGAAGGGGAGAAACACGACACTTCGGCTTAGGACACTCATGATCTCCAACCTTTCTCTTGCCAAAGCACTTTTGGAAGTTTTCAAGTAATTCTTGTTTTGGATCGAGACAAAAACAGTTATGATTTGGATTTGCTTCAGAAATAATTTTTGTTTGATAGTCATTCGATTTTTTTTTTTTTTTTTTATTTATGTTACTTTTTTTAGAACTTATCGTTTCCGAAAATTTGTATTCTTAATCAACATGCATAAAAAAGGATGAACAGTGTTTTCTTTATTAAATTTATTTATTTTGCGATATAAATTCTATAATTCTTCTCAACATGCATAAAAAAATTACGAAATTTACTCGGTTGAAAATTCAAATTAGTTTTAAGAGTTTGTAGTTAGAAAATGTAGTCAGCTACACTCAATGATCTGATCGTCTTTATTGGTGAATTAGAAAGGATGAACAGTTTTAGTGAACATAATATAGATTTTCACTCCCCATACTTCACCAAAGAAATGCACTGTTTGCCAAAGATCTCCATTTCAGCGACTGAAAGCTTCTCGATTCAAGATTCACTATACACCGACCGGAAACACAGAAGAAATGAGATTGAGTTCCGAAGAATTCTTGGCGTCGAATGCAATTCGAATAATCAAGGAACAGTGAGTCCTAACTTCGTGTATTGGGAGAAATCAAAGTGAGTTTCTCGATTCCGCATTCTTCAGATTGTTCTTACGGCAATCGCCATCAATTTATTCTATTCTCGCTTCGATTCTTCGAAGTAGTATCTATTTCTCTTCCATATTTGATGAATTCGGAAAAATTCGGCTTGTTTTTCTGGTAGTGGATGGAATCCCCACTGCGATCGAGGATGGAGATGTTGTAGAAAACCCTAGCGGGAAGCCTTTGGCCAGAATAGTTTCTGAAGCTGAGGCAATTGCGACTAATATTTCAGATACAGAGCCATATGTAGGTATGGAGTTTGAATCTGAGGAGTCTGCCAAGGTTTTCTACGATGCATATGCTTCACGACTTGGTTTTATTATACGCGTTGATGCATTTCGTCGGTCCATGCGTGATGGTTCGGTTGTTTGGCGACGACTTGTTTGTAACAAAGAGGGGTTTCGCAAGTTTAGGCCGAAAAGAAGTGAAAATAGGAAGCCTCGAGCTATAACACGAGAAGGATGTAAGGCAATGGTTGTTGTGAAGAAAGAGAAATCTGGAAAATGGATTGTAACGAAGTTCGTCAAGGATCACAATCATCCACTGATTGTTACTCCTGCCAGTGCTCGTCGAAACGTTCTTCTATCACACACACGGGTGAGGACTTACTTTGATTCACTTTGTATTCATTTACGCTCAGATTATGTGTTTTTCTAGTTTCTTAACTCATTCTCTAAGTATTCTACCTTTGATTCAATGATGTACTTCAGCTTTCCAAGTTCATTTGCTTCAAAAAGAGCAAATGGGTATCATTTTATTTGTTGAATTTCTTTGGTGTGGTGTGTGGCCTCATGTTCTGATCAGGTCATCCATCTTGAGCTTTTTTTGAATAAATTAGAATTGATTGGAGCCACTGTATAGCCACTCTAGACTAGAAAATTTTCAGTGTTATAGTGCTTGTTTCAAACCATATAGTGGTTTCCTCCATATGCTTGGACGTTTCTTTATGAACTGTAGTTTTATTGGCAAACTTGGTCTTACTGCCTTCATCTTCCATTTCTTCAAGGTTGTTGTAACTTTAGGTGGGGTGGTCGTATGAAGCATTCTTTACCCTTCTTTACAAGGGTGTGAAAACCTCTCCCTAGTAGACGGGTTTAAGACAATATTTGCTAGTGGGGGCTTGGGCTGTTACAAATGGTATCAGAGCTAGATACCGGGCGATGTGCCAACGAGGAGGTCCCACGTCGATGGGAGAGGGGAACGAGTGCCAGCAAGAATGCTAGGCCCCAAAGGGGATGGATTGTGAGATCCCACATCGGTTGGAGAGGGGAACGAAGCATTCTTTATAAGGGTGTGGAAACCTCTTTCTAGCGTACGTGTTTTAAAACCTTAAGGGGAAGCCCGAAAGGGAAAGTCCAAAGAAGACAATATATGCTAGCGGTTGAGTTGTACTGTTACATCCTACTTCCATTAGAGGTAAGGCTCCAAGCAGATAAACCATGTCGTGTGGTTTTGAGCGTTGAGCTTCTTGATTTCTTGATTTCTCAAACAACTTAAAGGTCTTGCATCTTATTGTAATGACAAAAGCTTCACAGTCCTTTGATTTTACACGATCTTCAAAAGCTTCACTATAGTGAGAAATGCTATCTTGGCTTTTGAGGTCGAAGGATCAATCTCCAACACATGCTCCACATGTTTCTTAAGTATTATGTATGCTGTACTGAATCCCCTCCCCCATCCCAAAGGGAAGTGTCTTGATTTTTACCTCCTTTTTCTACACATGAACTCAATATAGTGTACAAGATACATTGTTTATATATCTTCATGTTTCTGTTACTATTATTTCAGGATGAGAAAGATGCAAAAATTCGAGAATTAACTGCCGAACTGCAGCTAGAACGAAAGCGATGCGCAGCTTATCAAGAACAGCTTGCCATGATATTAAGAGACATGGAAGAACACTCGAATCATCTGGCAAGAAACATAGATGACATTGTTCAAAGTGTGAAAGATATTGAATCAAAAAGCAATACATTTTCAAATAGCTAACAACAGAATCCAAAGAGAATATATATATATTTTTGTAAAATTTTCTATTATTACTGTTTATATTGTTCATTAATCCTGCCCTTTTCCCTCCCATTTTGTGATTTGTATGGCTAAAGTTTAATAATATCGCCCTTGGTCCACAGATCAAGGG AACCGCCATTAATGCGTGAAGAAAGGATGAACCGCCATTAATGAGTGAAGAAGAATTAATGGAAGGGGAGAAACACGACACTTCGGCTTAGGACACTCATGATCTCCAACCTTTCTCTTGCCAAAGCACTTTTGGAAGTTTTCAAGTAATTCTTGTTTTGGATCGAGACAAAAACAGTTATGATTTGGATTTGCTTCAGAAATAATTTTTGTTTGATAGTCATTCGATTTTTTTTTTTTTTTTTTATTTATGTTACTTTTTTTAGAACTTATCGTTTCCGAAAATTTGTATTCTTAATCAACATGCATAAAAAAGGATGAACAGTGTTTTCTTTATTAAATTTATTTATTTTGCGATATAAATTCTATAATTCTTCTCAACATGCATAAAAAAATTACGAAATTTACTCGGTTGAAAATTCAAATTAGTTTTAAGAGTTTGTAGTTAGAAAATGTAGTCAGCTACACTCAATGATCTGATCGTCTTTATTGGTGAATTAGAAAGGATGAACAGTTTTAGTGAACATAATATAGATTTTCACTCCCCATACTTCACCAAAGAAATGCACTGTTTGCCAAAGATCTCCATTTCAGCGACTGAAAGCTTCTCGATTCAAGATTCACTATACACCGACCGGAAACACAGAAGAAATGAGATTGAGTTCCGAAGAATTCTTGGCGTCGAATGCAATTCGAATAATCAAGGAACAGTGAGTCCTAACTTCGTGTATTGGGAGAAATCAAATATCTATTTCTCTTCCATATTTGATGAATTCGGAAAAATTCGGCTTGTTTTTCTGGTAGTGGATGGAATCCCCACTGCGATCGAGGATGGAGATGTTGTAGAAAACCCTAGCGGGAAGCCTTTGGCCAGAATAGTTTCTGAAGCTGAGGCAATTGCGACTAATATTTCAGATACAGAGCCATATGTAGGTATGGAGTTTGAATCTGAGGAGTCTGCCAAGGTTTTCTACGATGCATATGCTTCACGACTTGGTTTTATTATACGCGTTGATGCATTTCGTCGGTCCATGCGTGATGGTTCGGTTGTTTGGCGACGACTTGTTTGTAACAAAGAGGGGTTTCGCAAGTTTAGGCCGAAAAGAAGTGAAAATAGGAAGCCTCGAGCTATAACACGAGAAGGATGTAAGGCAATGGTTGTTGTGAAGAAAGAGAAATCTGGAAAATGGATTGTAACGAAGTTCGTCAAGGATCACAATCATCCACTGATTGTTACTCCTGCCAGTGCTCGTCGAAACGTTCTTCTATCACACACACGGGATGAGAAAGATGCAAAAATTCGAGAATTAACTGCCGAACTGCAGCTAGAACGAAAGCGATGCGCAGCTTATCAAGAACAGCTTGCCATGATATTAAGAGACATGGAAGAACACTCGAATCATCTGGCAAGAAACATAGATGACATTGTTCAAAGTGTGAAAGATATTGAATCAAAAAGCAATACATTTTCAAATAGCTAACAACAGAATCCAAAGAGAATATATATATATTTTTGTAAAATTTTCTATTATTACTGTTTATATTGTTCATTAATCCTGCCCTTTTCCCTCCCATTTTGTGATTTGTATGGCTAAAGTTTAATAATATCGCCCTTGGTCCACAGATCAAGGG ATGAACAGTTTTAGTGAACATAATATAGATTTTCACTCCCCATACTTCACCAAAGAAATGCACTGTTTGCCAAAGATCTCCATTTCAGCGACTGAAAGCTTCTCGATTCAAGATTCACTATACACCGACCGGAAACACAGAAGAAATGAGATTGAGTTCCGAAGAATTCTTGGCGTCGAATGCAATTCGAATAATCAAGGAACAGTGAGTCCTAACTTCGTGTATTGGGAGAAATCAAATATCTATTTCTCTTCCATATTTGATGAATTCGGAAAAATTCGGCTTGTTTTTCTGGTAGTGGATGGAATCCCCACTGCGATCGAGGATGGAGATGTTGTAGAAAACCCTAGCGGGAAGCCTTTGGCCAGAATAGTTTCTGAAGCTGAGGCAATTGCGACTAATATTTCAGATACAGAGCCATATGTAGGTATGGAGTTTGAATCTGAGGAGTCTGCCAAGGTTTTCTACGATGCATATGCTTCACGACTTGGTTTTATTATACGCGTTGATGCATTTCGTCGGTCCATGCGTGATGGTTCGGTTGTTTGGCGACGACTTGTTTGTAACAAAGAGGGGTTTCGCAAGTTTAGGCCGAAAAGAAGTGAAAATAGGAAGCCTCGAGCTATAACACGAGAAGGATGTAAGGCAATGGTTGTTGTGAAGAAAGAGAAATCTGGAAAATGGATTGTAACGAAGTTCGTCAAGGATCACAATCATCCACTGATTGTTACTCCTGCCAGTGCTCGTCGAAACGTTCTTCTATCACACACACGGGATGAGAAAGATGCAAAAATTCGAGAATTAACTGCCGAACTGCAGCTAGAACGAAAGCGATGCGCAGCTTATCAAGAACAGCTTGCCATGATATTAAGAGACATGGAAGAACACTCGAATCATCTGGCAAGAAACATAGATGACATTGTTCAAAGTGTGAAAGATATTGAATCAAAAAGCAATACATTTTCAAATAGCTAA MNSFSEHNIDFHSPYFTKEMHCLPKISISATESFSIQDSLYTDRKHRRNEIEFRRILGVECNSNNQGTVSPNFVYWEKSNIYFSSIFDEFGKIRLVFLVVDGIPTAIEDGDVVENPSGKPLARIVSEAEAIATNISDTEPYVGMEFESEESAKVFYDAYASRLGFIIRVDAFRRSMRDGSVVWRRLVCNKEGFRKFRPKRSENRKPRAITREGCKAMVVVKKEKSGKWIVTKFVKDHNHPLIVTPASARRNVLLSHTRDEKDAKIRELTAELQLERKRCAAYQEQLAMILRDMEEHSNHLARNIDDIVQSVKDIESKSNTFSNS Homology
BLAST of Cp4.1LG12g10580 vs. ExPASy Swiss-Prot
Match: Q9SZL8 (Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=FRS5 PE=1 SV=1) HSP 1 Score: 136.3 bits (342), Expect = 6.0e-31 Identity = 71/147 (48.30%), Postives = 98/147 (66.67%), Query Frame = 0
HSP 2 Score: 40.8 bits (94), Expect = 3.4e-02 Identity = 24/72 (33.33%), Postives = 40/72 (55.56%), Query Frame = 0
BLAST of Cp4.1LG12g10580 vs. ExPASy Swiss-Prot
Match: Q9M8J3 (Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=FRS7 PE=2 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 2.4e-16 Identity = 46/104 (44.23%), Postives = 59/104 (56.73%), Query Frame = 0
BLAST of Cp4.1LG12g10580 vs. ExPASy Swiss-Prot
Match: Q3E7I5 (Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana OX=3702 GN=FRS12 PE=2 SV=1) HSP 1 Score: 87.0 bits (214), Expect = 4.1e-16 Identity = 46/110 (41.82%), Postives = 62/110 (56.36%), Query Frame = 0
BLAST of Cp4.1LG12g10580 vs. ExPASy Swiss-Prot
Match: Q3EBQ3 (Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=FRS2 PE=1 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 1.9e-13 Identity = 37/99 (37.37%), Postives = 63/99 (63.64%), Query Frame = 0
BLAST of Cp4.1LG12g10580 vs. ExPASy Swiss-Prot
Match: Q9SWG3 (Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=FAR1 PE=1 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 4.3e-13 Identity = 47/161 (29.19%), Postives = 82/161 (50.93%), Query Frame = 0
BLAST of Cp4.1LG12g10580 vs. NCBI nr
Match: KAG7014556.1 (Protein FAR1-RELATED SEQUENCE 5 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 605 bits (1560), Expect = 3.05e-217 Identity = 313/344 (90.99%), Postives = 320/344 (93.02%), Query Frame = 0
BLAST of Cp4.1LG12g10580 vs. NCBI nr
Match: KAG6576034.1 (AUGMIN subunit 3, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 556 bits (1433), Expect = 2.05e-189 Identity = 286/293 (97.61%), Postives = 288/293 (98.29%), Query Frame = 0
BLAST of Cp4.1LG12g10580 vs. NCBI nr
Match: XP_022953886.1 (protein FAR1-RELATED SEQUENCE 5 [Cucurbita moschata]) HSP 1 Score: 486 bits (1252), Expect = 6.01e-171 Identity = 266/324 (82.10%), Postives = 278/324 (85.80%), Query Frame = 0
BLAST of Cp4.1LG12g10580 vs. NCBI nr
Match: XP_023547555.1 (protein FAR1-RELATED SEQUENCE 5 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 433 bits (1113), Expect = 4.83e-151 Identity = 224/225 (99.56%), Postives = 225/225 (100.00%), Query Frame = 0
BLAST of Cp4.1LG12g10580 vs. NCBI nr
Match: XP_022991203.1 (protein FAR1-RELATED SEQUENCE 5 [Cucurbita maxima]) HSP 1 Score: 423 bits (1087), Expect = 4.39e-147 Identity = 217/225 (96.44%), Postives = 223/225 (99.11%), Query Frame = 0
BLAST of Cp4.1LG12g10580 vs. ExPASy TrEMBL
Match: A0A6J1GPB7 (protein FAR1-RELATED SEQUENCE 5 OS=Cucurbita moschata OX=3662 GN=LOC111456290 PE=4 SV=1) HSP 1 Score: 486 bits (1252), Expect = 2.91e-171 Identity = 266/324 (82.10%), Postives = 278/324 (85.80%), Query Frame = 0
BLAST of Cp4.1LG12g10580 vs. ExPASy TrEMBL
Match: A0A6J1JVH7 (protein FAR1-RELATED SEQUENCE 5 OS=Cucurbita maxima OX=3661 GN=LOC111487929 PE=4 SV=1) HSP 1 Score: 423 bits (1087), Expect = 2.12e-147 Identity = 217/225 (96.44%), Postives = 223/225 (99.11%), Query Frame = 0
BLAST of Cp4.1LG12g10580 vs. ExPASy TrEMBL
Match: A0A1S3BGE3 (protein FAR-RED IMPAIRED RESPONSE 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489731 PE=4 SV=1) HSP 1 Score: 390 bits (1001), Expect = 2.34e-134 Identity = 197/225 (87.56%), Postives = 215/225 (95.56%), Query Frame = 0
BLAST of Cp4.1LG12g10580 vs. ExPASy TrEMBL
Match: A0A0A0KA59 (FAR1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G372900 PE=4 SV=1) HSP 1 Score: 378 bits (971), Expect = 8.57e-130 Identity = 193/225 (85.78%), Postives = 212/225 (94.22%), Query Frame = 0
BLAST of Cp4.1LG12g10580 vs. ExPASy TrEMBL
Match: A0A1S3BGZ2 (protein FAR1-RELATED SEQUENCE 5 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489731 PE=4 SV=1) HSP 1 Score: 333 bits (855), Expect = 8.79e-113 Identity = 168/181 (92.82%), Postives = 178/181 (98.34%), Query Frame = 0
BLAST of Cp4.1LG12g10580 vs. TAIR 10
Match: AT3G07500.1 (Far-red impaired responsive (FAR1) family protein ) HSP 1 Score: 266.5 bits (680), Expect = 2.7e-71 Identity = 135/215 (62.79%), Postives = 170/215 (79.07%), Query Frame = 0
BLAST of Cp4.1LG12g10580 vs. TAIR 10
Match: AT2G43280.1 (Far-red impaired responsive (FAR1) family protein ) HSP 1 Score: 184.1 bits (466), Expect = 1.8e-46 Identity = 93/178 (52.25%), Postives = 130/178 (73.03%), Query Frame = 0
BLAST of Cp4.1LG12g10580 vs. TAIR 10
Match: AT3G59470.1 (Far-red impaired responsive (FAR1) family protein ) HSP 1 Score: 167.9 bits (424), Expect = 1.3e-41 Identity = 89/192 (46.35%), Postives = 126/192 (65.62%), Query Frame = 0
BLAST of Cp4.1LG12g10580 vs. TAIR 10
Match: AT3G59470.2 (Far-red impaired responsive (FAR1) family protein ) HSP 1 Score: 167.9 bits (424), Expect = 1.3e-41 Identity = 89/192 (46.35%), Postives = 126/192 (65.62%), Query Frame = 0
BLAST of Cp4.1LG12g10580 vs. TAIR 10
Match: AT4G12850.1 (Far-red impaired responsive (FAR1) family protein ) HSP 1 Score: 145.2 bits (365), Expect = 9.1e-35 Identity = 76/182 (41.76%), Postives = 117/182 (64.29%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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