Cp4.1LG12g06860 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG12g06860
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptionprotein FRA10AC1
LocationCp4.1LG12: 7359814 .. 7362891 (+)
RNA-Seq ExpressionCp4.1LG12g06860
SyntenyCp4.1LG12g06860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAGATGGACCTTTCTGAGTCGCCAAATCAAAGCGAATTCCATCTGTTGGCGCGGCCATGGCGTCGTTTGGCTCTCTGAAGAATGCCATCTTCGAAAGAGAAGAGAGAAAACAGTGCGCTCTCTTGTCCTTTAATCTCTCTTAACATGTCCGTAGCTCATTTCCATGGAGGCCTTTCTGTCATTTACTCTTAACCTATTTTCTTCTTTATTCTTGAAAATTTTGCAGGCAGTATCAGGCGCATGTGCGAGGCTCAATGTTCACGATCGCCGCAAGAAGTTTATGCGTGAGTATGGTGTGATTGCTACTGTGTTATTCAGTGCGTAACTTTTTTTGTGGAATTAATGAGCATTTGTGGGGGAAACCATTGGATTTGTGATTGTGGCTTAATTATACGTTGCTTTATTTGAATGTTTTTGGCGTATGATCTTTTATTTTAACATGAAGATCAGTTACTAGCATTGGGGGCGAGACTACTGCTCAATTATGGAAGTGATTGAATGTTGTTGTTTAGCTTTGAGCTCATTTGGATTTTGTCTATCGCGGTTGCAAATGGGATAGAGTGATAGGAATTGTTAAACACAGTACATTTAGTTGGCTTATAAGGTTATTAGCTGACGGACGGACGTGAAGGATGCTTGCAAATATTGAGCCCCTTATTTGCATATCCTGGAGTCCTAAAGCAAAAGAATGATGAACAGTTTCCCTCACTAAGATGACAGGAGGCTACAATCATCCTAACATTTTGGTGCAAGAGATTTTTCTGTTAGCCTCAAGATTAGTTACTTTTAAATATTTGAATTGTGGATTTGTTGCAGTTCATTTCTACGGGAAAAATCAATCTATTGAAGAGAAATTTCCTATTAAAACTGATCAAGACGCCTTGAGGGAGGGCTACCAGTATAATCCCACTATTCTTTCCAATCATGATTGAATGCCATTTTATCATTCATAGAGATGCAAATGATGGAATGCCAAATTAAATAATTAATTAGAATATGAATATATAATCGTTAAATGCAGTTCTAATAAATCCCTATTTTGCATGATTTAGAATGTACACAGGTAGAGCATAAGTGCACTCATAGTCAACTTGATCATTGTGTGTATTTTTGGTTCCTTGATGATGACTTGTTTATCTACTTGGGTTTGTGTGTTGGTGACATGTCGATTTCTTCCAAGGGACCAGTGGAGATTGATAAGCTTTGATCCACTATTGGTTATTTGTTCGCCATGGCTGGTGAACCTGTTTGTTGGCGTTCAATATTGCAATCTACTATTACATTGTCTAACACCGAAACAGAGTATATGACAGTCACTGTAGTTTTTAAAGAAGGTATTTGGTTCCATGATTTGGTTAATGACTTGAGTATTTCTCAGTAACACGTAGATGTGTTTTGTGATAACTAGAGTGCTATTTGTTTGTCGAAGAACCAAGTCTATCATGCTCGTACCACCAAGTATATTGATGTCTGATTTCATTCTATTCAAGAAAATATAAATGAAGGGGATATTCGTTTATTGAAAATTGGAACTGCTGATAATCCTATGGATATGTTGACTATGTTGACAGAGGTGATTGCTTGTGAAAAGTTTTGGCATTGTTTAGATTTGATCAATGTTGGACGGAAGAAATAGCTTGTTGACTTGGTGGTAGCCAAATTGATTATCTGCTTTGGGATCTTCTGATAAAGTGGAGATTGTTGTAAGTTGTGATGAAGAATAAGTTCATGCATCTTCTACGCATGTAGGGTCATTTATTTTAGTTCATAAGTCTCATTTATTTGGTTCATAATCCTTACTGGTTCATCTTTCATTTTGATACATGTATGAGCATTAATGTTGCTTTGATTCATGTACGAGAATTAGTATTGCTATGCCTGCATAAAGGCTTGTCTAGCATTGTTTTGAGAGATTGAGTCATTGTCATTTTGTATTTGCCTAGAGGCAATTGGGAGGAACTTTGTAAGATAGACTTTGTAGTGCGAGAGTGTGAGAGATACACTTATAAACACTTTGGTTATAGTGATTGGCTACCACCTATGAATGTAGGAGAATTTGTTCTCTCCGAACCACGTAAATCTTTGTGTCTCTTTGTTTAATTTCTGTTTGTGGGTGTGAGTGCAATTGCTTTTGCTTCAGCTTCCGCGACAACAATTGAGTATCAAAGCACCTTTGATTGTGGCATTAGGGTACAACACATATAACCATGTACGTATTCATTAACTTTGTTCGTGCTTGGATATGGTTGAATCATTTGCTGTTAGTTTCCCTCACTCCATCATTCCATGCTTACATAACTTATATTTGCATCATCTGTTGTAATGTAATGTAAAAAGCAAGCCACAATTTTCACTGTGATAAAGCTGTTCGTTTGGAATCTGAATCATTCTTTTTATGATTTGTCAAATTGAAATCTAACAATTTTCTCACCTCCCCTGTTGTCTTCGTTTAAAATTTTCTATTTTTATAGTCTCGTACTTAGTTTTTTTGCAAGATTTATTTATCACTGTTTTCTCCCATCTTGTATATTTTGTTGTAGATGCTCAAAGAAGCTTCATTACTAGAGAGAAAATGAGAAACAGGAAAGGATGGAGCAAGAAATGTCCAAAAGGAAGAGGTACCACTCCAAACTTTAAGGTACAATTTTCTACTAGCTAGATTGGCAAGAAGGATCAGGTCGTCTTTTATAACATATCCAACGGGTTGGGTCAGGTCGTCTTTTATAACATTAGCTAGATTGCAAGTTTAAACATTATTCTCATATCCAACGGGTTGGGTCAGGTCGTCTTTTATAACATTAGCTAGATTGCAAGTTTAAATATTATTCTCATATCCAACGGGTTGGGTCAGGTCGTCTTTTATAACATTTGACACCATCAATGAAATTGTTTCTTATCCAAAAATTAGAAAACCTCTACTTAGTCAGTCTATTGGCAAAGACCCTTTTGCCGTTTCTTTGCAGGAAAGAAGGCTTCAACATCATCACGGGGGGATCATAAAGCTGATGACTAAAACGACTTTGATGAATATGGGCCTCAAGGCTACACTTCCGGCCTCCACAAGGCAGTATTTTCAG

mRNA sequence

GGAGATGGACCTTTCTGAGTCGCCAAATCAAAGCGAATTCCATCTGTTGGCGCGGCCATGGCGTCGTTTGGCTCTCTGAAGAATGCCATCTTCGAAAGAGAAGAGAGAAAACAGCAGTATCAGGCGCATGTGCGAGGCTCAATGTTCACGATCGCCGCAAGAAGTTTATGCGTGAATGCTCAAAGAAGCTTCATTACTAGAGAGAAAATGAGAAACAGGAAAGGATGGAGCAAGAAATGTCCAAAAGGAAGAGGTACCACTCCAAACTTTAAGGAAAGAAGGCTTCAACATCATCACGGGGGGATCATAAAGCTGATGACTAAAACGACTTTGATGAATATGGGCCTCAAGGCTACACTTCCGGCCTCCACAAGGCAGTATTTTCAG

Coding sequence (CDS)

ATGGCGTCGTTTGGCTCTCTGAAGAATGCCATCTTCGAAAGAGAAGAGAGAAAACAGCAGTATCAGGCGCATGTGCGAGGCTCAATGTTCACGATCGCCGCAAGAAGTTTATGCGTGAATGCTCAAAGAAGCTTCATTACTAGAGAGAAAATGAGAAACAGGAAAGGATGGAGCAAGAAATGTCCAAAAGGAAGAGGTACCACTCCAAACTTTAAGGAAAGAAGGCTTCAACATCATCACGGGGGGATCATAAAGCTGATGACTAAAACGACTTTGATGAATATGGGCCTCAAGGCTACACTTCCGGCCTCCACAAGGCAGTATTTTCAG

Protein sequence

MASFGSLKNAIFEREERKQQYQAHVRGSMFTIAARSLCVNAQRSFITREKMRNRKGWSKKCPKGRGTTPNFKERRLQHHHGGIIKLMTKTTLMNMGLKATLPASTRQYFQ
Homology
[Close]
BLAST of Cp4.1LG12g06860 vs. NCBI nr
Match: XP_022953255.1 (uncharacterized protein LOC111455861 isoform X2 [Cucurbita moschata])

HSP 1 Score: 163 bits (413), Expect = 1.04e-49
Identity = 90/112 (80.36%), Postives = 95/112 (84.82%), Query Frame = 0 

Query: 1   MASFGSLKNAIFEREERKQQYQAHVRGSMFTIAARSLCVNAQRSFITRE--KMRNRKGWS 60
           MASFGSLKNAIFEREERKQQYQAHVRG +     R   ++AQRSFITRE  KMRN +GWS
Sbjct: 1   MASFGSLKNAIFEREERKQQYQAHVRG-LNAHDRRKKFMHAQRSFITRERKKMRNSEGWS 60

Query: 61  KKCPKGRGTTPNFKERRLQHHHGGIIKLMTKTTLMNMGLKATLPASTRQYFQ 110
           KKCPKGRGTTPNFKERRLQHH G IIKLMTKTTLMNMGLKATLPAST   F+
Sbjct: 61  KKCPKGRGTTPNFKERRLQHHQG-IIKLMTKTTLMNMGLKATLPASTGSIFR 110

[Close]
BLAST of Cp4.1LG12g06860 vs. NCBI nr
Match: XP_022953257.1 (uncharacterized protein LOC111455861 isoform X4 [Cucurbita moschata])

HSP 1 Score: 103 bits (258), Expect = 2.26e-26
Identity = 57/76 (75.00%), Postives = 60/76 (78.95%), Query Frame = 0 

Query: 1  MASFGSLKNAIFEREERKQQYQAHVRGSMFTIAARSLC--VNAQRSFITRE--KMRNRKG 60
          MASFGSLKNAIFEREERKQQYQAHVRG       +      +AQRSFITRE  KMRN +G
Sbjct: 1  MASFGSLKNAIFEREERKQQYQAHVRGLNAHDRRKKFMREYDAQRSFITRERKKMRNSEG 60

Query: 61 WSKKCPKGRGTTPNFK 72
          WSKKCPKGRGTTPNFK
Sbjct: 61 WSKKCPKGRGTTPNFK 76

[Close]
BLAST of Cp4.1LG12g06860 vs. NCBI nr
Match: XP_022953254.1 (uncharacterized protein LOC111455861 isoform X1 [Cucurbita moschata])

HSP 1 Score: 94.4 bits (233), Expect = 4.41e-22
Identity = 52/68 (76.47%), Postives = 56/68 (82.35%), Query Frame = 0 

Query: 1  MASFGSLKNAIFEREERKQQYQAHVRGSMFTIAARSLCVNAQRSFITRE--KMRNRKGWS 60
          MASFGSLKNAIFEREERKQQYQAHVRG +     R   ++AQRSFITRE  KMRN +GWS
Sbjct: 1  MASFGSLKNAIFEREERKQQYQAHVRG-LNAHDRRKKFMHAQRSFITRERKKMRNSEGWS 60

Query: 61 KKCPKGRG 66
          KKCPKGRG
Sbjct: 61 KKCPKGRG 67

[Close]
BLAST of Cp4.1LG12g06860 vs. NCBI nr
Match: XP_022953256.1 (uncharacterized protein LOC111455861 isoform X3 [Cucurbita moschata])

HSP 1 Score: 90.9 bits (224), Expect = 4.73e-21
Identity = 51/70 (72.86%), Postives = 54/70 (77.14%), Query Frame = 0 

Query: 1  MASFGSLKNAIFEREERKQQYQAHVRGSMFTIAARSLC--VNAQRSFITRE--KMRNRKG 60
          MASFGSLKNAIFEREERKQQYQAHVRG       +      +AQRSFITRE  KMRN +G
Sbjct: 1  MASFGSLKNAIFEREERKQQYQAHVRGLNAHDRRKKFMREYDAQRSFITRERKKMRNSEG 60

Query: 61 WSKKCPKGRG 66
          WSKKCPKGRG
Sbjct: 61 WSKKCPKGRG 70

[Close]
BLAST of Cp4.1LG12g06860 vs. NCBI nr
Match: XP_022991941.1 (uncharacterized protein LOC111488432 isoform X3 [Cucurbita maxima])

HSP 1 Score: 57.8 bits (138), Expect = 3.15e-08
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 1  MASFGSLKNAIFEREERKQQYQAHVRG 27
          MASFGSLKNAIFEREERKQQYQAHVRG
Sbjct: 1  MASFGSLKNAIFEREERKQQYQAHVRG 27

[Close]
BLAST of Cp4.1LG12g06860 vs. ExPASy TrEMBL
Match: A0A6J1GP49 (uncharacterized protein LOC111455861 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111455861 PE=4 SV=1)

HSP 1 Score: 163 bits (413), Expect = 5.01e-50
Identity = 90/112 (80.36%), Postives = 95/112 (84.82%), Query Frame = 0 

Query: 1   MASFGSLKNAIFEREERKQQYQAHVRGSMFTIAARSLCVNAQRSFITRE--KMRNRKGWS 60
           MASFGSLKNAIFEREERKQQYQAHVRG +     R   ++AQRSFITRE  KMRN +GWS
Sbjct: 1   MASFGSLKNAIFEREERKQQYQAHVRG-LNAHDRRKKFMHAQRSFITRERKKMRNSEGWS 60

Query: 61  KKCPKGRGTTPNFKERRLQHHHGGIIKLMTKTTLMNMGLKATLPASTRQYFQ 110
           KKCPKGRGTTPNFKERRLQHH G IIKLMTKTTLMNMGLKATLPAST   F+
Sbjct: 61  KKCPKGRGTTPNFKERRLQHHQG-IIKLMTKTTLMNMGLKATLPASTGSIFR 110

[Close]
BLAST of Cp4.1LG12g06860 vs. ExPASy TrEMBL
Match: A0A6J1GMR5 (uncharacterized protein LOC111455861 isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111455861 PE=4 SV=1)

HSP 1 Score: 103 bits (258), Expect = 1.09e-26
Identity = 57/76 (75.00%), Postives = 60/76 (78.95%), Query Frame = 0 

Query: 1  MASFGSLKNAIFEREERKQQYQAHVRGSMFTIAARSLC--VNAQRSFITRE--KMRNRKG 60
          MASFGSLKNAIFEREERKQQYQAHVRG       +      +AQRSFITRE  KMRN +G
Sbjct: 1  MASFGSLKNAIFEREERKQQYQAHVRGLNAHDRRKKFMREYDAQRSFITRERKKMRNSEG 60

Query: 61 WSKKCPKGRGTTPNFK 72
          WSKKCPKGRGTTPNFK
Sbjct: 61 WSKKCPKGRGTTPNFK 76

[Close]
BLAST of Cp4.1LG12g06860 vs. ExPASy TrEMBL
Match: A0A6J1GP43 (uncharacterized protein LOC111455861 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455861 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.14e-22
Identity = 52/68 (76.47%), Postives = 56/68 (82.35%), Query Frame = 0 

Query: 1  MASFGSLKNAIFEREERKQQYQAHVRGSMFTIAARSLCVNAQRSFITRE--KMRNRKGWS 60
          MASFGSLKNAIFEREERKQQYQAHVRG +     R   ++AQRSFITRE  KMRN +GWS
Sbjct: 1  MASFGSLKNAIFEREERKQQYQAHVRG-LNAHDRRKKFMHAQRSFITRERKKMRNSEGWS 60

Query: 61 KKCPKGRG 66
          KKCPKGRG
Sbjct: 61 KKCPKGRG 67

[Close]
BLAST of Cp4.1LG12g06860 vs. ExPASy TrEMBL
Match: A0A6J1GMH1 (uncharacterized protein LOC111455861 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111455861 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.29e-21
Identity = 51/70 (72.86%), Postives = 54/70 (77.14%), Query Frame = 0 

Query: 1  MASFGSLKNAIFEREERKQQYQAHVRGSMFTIAARSLC--VNAQRSFITRE--KMRNRKG 60
          MASFGSLKNAIFEREERKQQYQAHVRG       +      +AQRSFITRE  KMRN +G
Sbjct: 1  MASFGSLKNAIFEREERKQQYQAHVRGLNAHDRRKKFMREYDAQRSFITRERKKMRNSEG 60

Query: 61 WSKKCPKGRG 66
          WSKKCPKGRG
Sbjct: 61 WSKKCPKGRG 70

[Close]
BLAST of Cp4.1LG12g06860 vs. ExPASy TrEMBL
Match: A0A6J1JS71 (uncharacterized protein LOC111488432 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111488432 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.52e-08
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 1  MASFGSLKNAIFEREERKQQYQAHVRG 27
          MASFGSLKNAIFEREERKQQYQAHVRG
Sbjct: 1  MASFGSLKNAIFEREERKQQYQAHVRG 27

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g06860 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g06860 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022953255.11.04e-4980.36uncharacterized protein LOC111455861 isoform X2 [Cucurbita moschata][more]
XP_022953257.12.26e-2675.00uncharacterized protein LOC111455861 isoform X4 [Cucurbita moschata][more]
XP_022953254.14.41e-2276.47uncharacterized protein LOC111455861 isoform X1 [Cucurbita moschata][more]
XP_022953256.14.73e-2172.86uncharacterized protein LOC111455861 isoform X3 [Cucurbita moschata][more]
XP_022991941.13.15e-08100.00uncharacterized protein LOC111488432 isoform X3 [Cucurbita maxima][more]
BLAST of Cp4.1LG12g06860 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GP495.01e-5080.36uncharacterized protein LOC111455861 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1GMR51.09e-2675.00uncharacterized protein LOC111455861 isoform X4 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1GP432.14e-2276.47uncharacterized protein LOC111455861 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1GMH12.29e-2172.86uncharacterized protein LOC111455861 isoform X3 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1JS711.52e-08100.00uncharacterized protein LOC111488432 isoform X3 OS=Cucurbita maxima OX=3661 GN=L... [more]
BLAST of Cp4.1LG12g06860 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..71

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g06860.1Cp4.1LG12g06860.1mRNA