Cp4.1LG10g11680 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG10g11680
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG10: 8797700 .. 8798569 (+)
RNA-Seq ExpressionCp4.1LG10g11680
SyntenyCp4.1LG10g11680
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGTTGTACCTACACTTCCTAGTTCCCAAGTCCACCGGTACTTGAATTCTTTGGAACTTTGTGCCCCAAGATGGCCTATAGGAGGCCTCATGATTGGCTTGAGATGGTTAGGATTTCTCTGATTAATGCTGAGGAACTACTAGGTGGTGATGCTTATTTTTCTGTCTAGCATTTTCCATTAAGTTTATTCTGACAGAATATGAATTTTTTATTCTAATCATCTGACAATGTACCTCTAGAAGTTGATTTAAAGATTATTATTTTAGTTTGTGGTTGAGAAGTATTCTCCTGGCATACATTCGGATGAATGCACTTTTTTATTTTCCTCTAGTGGCATCTCTTAGAAAATTTGACGATGATCTGTGCTTTTGTTGGGGGTTCTTCACTTTCTTTTCGTCAGCCTGATCCATTGTAGTTGCTATGTGTAATCTGTAATATATTAAATGTATAACTTGAAAGGACTTATTTATGTCTGTCATTTCCAGGTATCTCTCAGATCGTACCTCTATTCATTTAAGAAATGGAATCCCAGATCAAACATGCTTTGGTGGTCAAAGTAATGGGCCGAACTGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTCGACGATCAGAATCGTTACATCATGAGGAATGTCAAGGGACCTGTAAGGGAAGGTGACATTCTTACCCTTCTGGAGTCTGAGAGAGAAGCAAGGAGATTGCGTTGAGGACATCGTCCCGATCTTGGTTCTCTGTGTTGCAGCTACTGGTGATTTGATTATCCTTCTCATTACACACTCTAGATATAGAATGATGTCTCTTATCAATTTTCCCTCTCTTGGTTACTGGCATGTTATCTCAGTAGTTCGATTCTAG

mRNA sequence

ATGTCTGTTGTACCTACACTTCCTAGTTCCCAAGTCCACCGGTACTTGAATTCTTTGGAACTTTGTGCCCCAAGATGGCCTATAGGAGGCCTCATGATTGGCTTGAGATGGTATCTCTCAGATCGTACCTCTATTCATTTAAGAAATGGAATCCCAGATCAAACATGCTTTGGTGGTCAAAGTAATGGGCCGAACTGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTCGACGATCAGAATCGTTACATCATGAGGAATGTCAAGGGACCTCTACTGGTGATTTGATTATCCTTCTCATTACACACTCTAGATATAGAATGATGTCTCTTATCAATTTTCCCTCTCTTGGTTACTGGCATGTTATCTCAGTAGTTCGATTCTAG

Coding sequence (CDS)

ATGTCTGTTGTACCTACACTTCCTAGTTCCCAAGTCCACCGGTACTTGAATTCTTTGGAACTTTGTGCCCCAAGATGGCCTATAGGAGGCCTCATGATTGGCTTGAGATGGTATCTCTCAGATCGTACCTCTATTCATTTAAGAAATGGAATCCCAGATCAAACATGCTTTGGTGGTCAAAGTAATGGGCCGAACTGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTCGACGATCAGAATCGTTACATCATGAGGAATGTCAAGGGACCTCTACTGGTGATTTGATTATCCTTCTCATTACACACTCTAGATATAGAATGATGTCTCTTATCAATTTTCCCTCTCTTGGTTACTGGCATGTTATCTCAGTAGTTCGATTCTAG

Protein sequence

MSVVPTLPSSQVHRYLNSLELCAPRWPIGGLMIGLRWYLSDRTSIHLRNGIPDQTCFGGQSNGPNWIKRAGDSSESQVSRRSESLHHEECQGTSTGDLIILLITHSRYRMMSLINFPSLGYWHVISVVRF
Homology
[Close]
BLAST of Cp4.1LG10g11680 vs. NCBI nr
Match: KAG7033529.1 (40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 84.3 bits (207), Expect = 2.88e-18
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 0 

Query: 1  MSVVPTLPSSQVHRYLNSLELCAPRWPIGGLMIGLRWYL 39
          MSVVPTLPSSQVHRYLNSLELCAPRWPIGGLMIGLRW +
Sbjct: 1  MSVVPTLPSSQVHRYLNSLELCAPRWPIGGLMIGLRWLI 39

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g11680 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG10g11680 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7033529.12.88e-1894.8740S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Cp4.1LG10g11680 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG10g11680 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g11680.1Cp4.1LG10g11680.1mRNA