Cp4.1LG10g05230 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG10g05230
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	rac-like GTP-binding protein RAC13
Location	Cp4.1LG10: 975216 .. 976449 (+)
RNA-Seq Expression	Cp4.1LG10g05230
Synteny	Cp4.1LG10g05230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CACTTGAAGAAAAAGATACCCAAAATCAAAACAAAAACAATTGCTCAACTTTCCCCTTCTGCAATCATTTCCATTTTCGATCACTTTCCTTTCGGTTCCAAGTGGTTGGAGTTTGTTGCTTTCTCTGCTCCTCTCCTCTCTCTTTTTGTACCATTGTATGTCCTTTAAAACCCATCCATTACACAACGAAGCCTTCAGCGCAAACCATGAACACCGCCAGGTTTATCAAATGCGTCACCGTCGGGGACGGCGCCGTCGGGAAGACTTGTATGCTCATTTCTTACACCACCAACACTTTTCCCACGGTACCCATTTCCCATTTCCCTATTTCAAATAATGGGTTTCGCTTCTTTTCCTTTTTTCATTCGTTCTTGTTCGTAGGATTATGTTCCGACCGTGTTCGATAACTTCAGCGCCAATGTGGTAGCCGACGGCAGCACTGTCAATCTTGGCTTATGGGACACTGCCGGACAGGAAGATTACAACAGACTGAGGCCTCTGAGTTACAGAGGAGCTGATGTCTTCCTATTGTCGTTTTCTCTCATCAGCAAACCCAGTTACGAGAACATCTTTAAGAAGGTAATTTAAATTCTTTCAAATTTCCCATTATGTCATAAAGGTAAGCCCTCTTCCTTTATGTTGCAGTGGATTCCTGAACTTAAACATTACGCTCCAAACGTCCCCATCGTTCTGGTTGGGACTAAGCTTGGTAAGAACTCCTTAACTTCACACCATTAACCCGCAAATTGAGTGAATTATGGTAACATTCAACGAAATCAACAACTTGCAGATCTACGAGACGACAGGCAGTATCTGATTGATCATCCAACCGCAACACCCATAACCACAGCTGAGGTAAAGAAATTAATCACTTAAAAAAACTGGATTCTGTTTTTGGGTTTGTTGATTGGACTGAAGGTTGTTCTTCAGGGCGAGGAACTGAGGCGGATGATCGGGGGAATTACATACATTGAATGCAGCTCCAAAACCCAAAAGGTATAGAGATTGATCCATAAAGGCCAGACCCTAACTAAATTGAATCTTTCCCTTTATAAACTCGTATTCATTTTTCAAATTAATCGATGTGGGACTCTGTCCTAACCATCCTCACCATTGAATTCTTTTTTGGGTGCAGAACGTTAAGAATGTATTTGATGCAGCAATAAAGGTAGCATTGAGGCCTCCACGACCAAAGAAGAAGCCTTGCAAGCAGAGGACTTGTGCTTTGCTTTGA

mRNA sequence

CACTTGAAGAAAAAGATACCCAAAATCAAAACAAAAACAATTGCTCAACTTTCCCCTTCTGCAATCATTTCCATTTTCGATCACTTTCCTTTCGGTTCCAAGTGGTTGGAGTTTGTTGCTTTCTCTGCTCCTCTCCTCTCTCTTTTTGTACCATTGTATGTCCTTTAAAACCCATCCATTACACAACGAAGCCTTCAGCGCAAACCATGAACACCGCCAGGTTTATCAAATGCGTCACCGTCGGGGACGGCGCCGTCGGGAAGACTTGTATGCTCATTTCTTACACCACCAACACTTTTCCCACGGATTATGTTCCGACCGTGTTCGATAACTTCAGCGCCAATGTGGTAGCCGACGGCAGCACTGTCAATCTTGGCTTATGGGACACTGCCGGACAGGAAGATTACAACAGACTGAGGCCTCTGAGTTACAGAGGAGCTGATGTCTTCCTATTGTCGTTTTCTCTCATCAGCAAACCCAGTTACGAGAACATCTTTAAGAAGTGGATTCCTGAACTTAAACATTACGCTCCAAACGTCCCCATCGTTCTGGTTGGGACTAAGCTTGATCTACGAGACGACAGGCAGTATCTGATTGATCATCCAACCGCAACACCCATAACCACAGCTGAGGTAGCATTGAGGCCTCCACGACCAAAGAAGAAGCCTTGCAAGCAGAGGACTTGTGCTTTGCTTTGA

Coding sequence (CDS)

ATGAACACCGCCAGGTTTATCAAATGCGTCACCGTCGGGGACGGCGCCGTCGGGAAGACTTGTATGCTCATTTCTTACACCACCAACACTTTTCCCACGGATTATGTTCCGACCGTGTTCGATAACTTCAGCGCCAATGTGGTAGCCGACGGCAGCACTGTCAATCTTGGCTTATGGGACACTGCCGGACAGGAAGATTACAACAGACTGAGGCCTCTGAGTTACAGAGGAGCTGATGTCTTCCTATTGTCGTTTTCTCTCATCAGCAAACCCAGTTACGAGAACATCTTTAAGAAGTGGATTCCTGAACTTAAACATTACGCTCCAAACGTCCCCATCGTTCTGGTTGGGACTAAGCTTGATCTACGAGACGACAGGCAGTATCTGATTGATCATCCAACCGCAACACCCATAACCACAGCTGAGGTAGCATTGAGGCCTCCACGACCAAAGAAGAAGCCTTGCAAGCAGAGGACTTGTGCTTTGCTTTGA

Protein sequence

MNTARFIKCVTVGDGAVGKTCMLISYTTNTFPTDYVPTVFDNFSANVVADGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLSFSLISKPSYENIFKKWIPELKHYAPNVPIVLVGTKLDLRDDRQYLIDHPTATPITTAEVALRPPRPKKKPCKQRTCALL

Homology

[Close]

BLAST of Cp4.1LG10g05230 vs. ExPASy Swiss-Prot
Match: Q41253 (Rac-like GTP-binding protein RAC13 OS=Gossypium hirsutum OX=3635 GN=RAC13 PE=2 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 5.6e-78
Identity = 144/196 (73.47%), Postives = 158/196 (80.61%), Query Frame = 0


Query: 1   MNTARFIKCVTVGDGAVGKTCMLISYTTNTFPTDYVPTVFDNFSANVVADGSTVNLGLWD 60
           M+TARFIKCVTVGDGAVGKTCMLISYT+NTFPTDYVPTVFDNFSANVV DGSTVNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLSFSLISKPSYENIFKKWIPELKHYAPNVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLL+FSLISK SYENI+KKWIPEL+HYA NVP+VLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIYKKWIPELRHYAHNVPVVLVGTKL 120

Query: 121 DLRDDRQYLIDHPTATPITTAE---------------------------------VALRP 164
           DLRDD+Q+LIDHP ATPI+T++                                 VALRP
Sbjct: 121 DLRDDKQFLIDHPGATPISTSQGEELKKMIGAVTYIECSSKTQQNVKAVFDAAIKVALRP 180

[Close]

BLAST of Cp4.1LG10g05230 vs. ExPASy Swiss-Prot
Match: Q40220 (Rac-like GTP-binding protein RAC2 OS=Lotus japonicus OX=34305 GN=RAC2 PE=2 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 4.9e-74
Identity = 141/196 (71.94%), Postives = 151/196 (77.04%), Query Frame = 0


Query: 1   MNTARFIKCVTVGDGAVGKTCMLISYTTNTFPTDYVPTVFDNFSANVVADGSTVNLGLWD 60
           M+TARFIKCVTVGDGAVGKTCMLISYT+NTFPTDYVPTVFDNFSANVV DGSTVNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLSFSLISKPSYENIFKKWIPELKHYAPNVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLL+FSL+S+ SYENI KKWIPEL+HYAP VPIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLLSRASYENISKKWIPELRHYAPTVPIVLVGTKL 120

Query: 121 DLRDDRQYLIDHPTATPITTAE---------------------------------VALRP 164
           DLR+DRQYLIDHP ATPITTA+                                 V L+P
Sbjct: 121 DLREDRQYLIDHPGATPITTAQGEELKKAIGAAVYLECSSKTQQNVKAVFDAAIKVVLQP 180

[Close]

BLAST of Cp4.1LG10g05230 vs. ExPASy Swiss-Prot
Match: Q41254 (Rac-like GTP-binding protein RAC9 OS=Gossypium hirsutum OX=3635 GN=RAC9 PE=2 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 4.9e-74
Identity = 138/196 (70.41%), Postives = 154/196 (78.57%), Query Frame = 0


Query: 1   MNTARFIKCVTVGDGAVGKTCMLISYTTNTFPTDYVPTVFDNFSANVVADGSTVNLGLWD 60
           MNT+RFIKCVTVGDGAVGKTCMLISYT+NTFPTDYVPTVFDNFSANVV DGSTVNLGLWD
Sbjct: 1   MNTSRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLSFSLISKPSYENIFKKWIPELKHYAPNVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLL+FSLIS+ SYEN+ KKWIPEL+HYAPNVPIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISRASYENVHKKWIPELRHYAPNVPIVLVGTKL 120

Query: 121 DLRDDRQYLIDHPTATPITTAE---------------------------------VALRP 164
           DLRDD+Q+L D+P A  ITT++                                 +ALRP
Sbjct: 121 DLRDDKQFLSDNPGAISITTSQGEELKKMIGAVTYIECSSKTQQNVKAVFDVAIKIALRP 180

[Close]

BLAST of Cp4.1LG10g05230 vs. ExPASy Swiss-Prot
Match: Q6Z7L8 (Rac-like GTP-binding protein 7 OS=Oryza sativa subsp. japonica OX=39947 GN=RAC7 PE=2 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 3.9e-71
Identity = 137/197 (69.54%), Postives = 151/197 (76.65%), Query Frame = 0


Query: 1   MNTARFIKCVTVGDGAVGKTCMLISYTTNTFPTDYVPTVFDNFSANVVADGSTVNLGLWD 60
           M+TARFIKCVTVGDGAVGKTCMLISYT+NTFPTDYVPTVFDNFSANVV DG+TVNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLSFSLISKPSYENIFKKWIPELKHYAPNVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLL+FSLISK SYENI KKWIPEL+HYAPNVPIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWIPELRHYAPNVPIVLVGTKL 120

Query: 121 DLRDDRQYLIDHPTATPITTAE---------------------------------VALRP 164
           DLR+D+Q+ +DHP   PI+TA+                                 V L P
Sbjct: 121 DLREDKQFFLDHPGLAPISTAQGEELKRMIGAAAYIECSSKTQQNVKSVFDSAIKVVLCP 180

[Close]

BLAST of Cp4.1LG10g05230 vs. ExPASy Swiss-Prot
Match: Q38903 (Rac-like GTP-binding protein ARAC2 OS=Arabidopsis thaliana OX=3702 GN=ARAC2 PE=1 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 2.5e-70
Identity = 135/186 (72.58%), Postives = 144/186 (77.42%), Query Frame = 0


Query: 1   MNTARFIKCVTVGDGAVGKTCMLISYTTNTFPTDYVPTVFDNFSANVVADGSTVNLGLWD 60
           M+TARFIKCVTVGDGAVGKTCMLISYT+NTFPTDYVPTVFDNFSANVV DGSTVNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLSFSLISKPSYENIFKKWIPELKHYAPNVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLL+FSLISK SYENI KKW+PELKHYAP +PIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKL 120

Query: 121 DLRDDRQYLIDHPTATPITTAE---------------------------------VALRP 154
           DLRDD+Q+L DHP A  ITTA+                                 VALRP
Sbjct: 121 DLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAIRVALRP 180

[Close]

BLAST of Cp4.1LG10g05230 vs. NCBI nr
Match: XP_023544294.1 (rac-like GTP-binding protein RAC13 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 319 bits (818), Expect = 2.58e-109
Identity = 163/196 (83.16%), Postives = 163/196 (83.16%), Query Frame = 0


Query: 1   MNTARFIKCVTVGDGAVGKTCMLISYTTNTFPTDYVPTVFDNFSANVVADGSTVNLGLWD 60
           MNTARFIKCVTVGDGAVGKTCMLISYTTNTFPTDYVPTVFDNFSANVVADGSTVNLGLWD
Sbjct: 1   MNTARFIKCVTVGDGAVGKTCMLISYTTNTFPTDYVPTVFDNFSANVVADGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLSFSLISKPSYENIFKKWIPELKHYAPNVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLLSFSLISKPSYENIFKKWIPELKHYAPNVPIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLSFSLISKPSYENIFKKWIPELKHYAPNVPIVLVGTKL 120

Query: 121 DLRDDRQYLIDHPTATPITTAE---------------------------------VALRP 163
           DLRDDRQYLIDHPTATPITTAE                                 VALRP
Sbjct: 121 DLRDDRQYLIDHPTATPITTAEGEELRRMIGGITYIECSSKTQKNVKNVFDAAIKVALRP 180

[Close]

BLAST of Cp4.1LG10g05230 vs. NCBI nr
Match: XP_022925841.1 (rac-like GTP-binding protein RAC13 [Cucurbita moschata] >KAG6581340.1 Rac-like GTP-binding protein 7, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034624.1 Rac-like GTP-binding protein 7 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 312 bits (800), Expect = 1.48e-106
Identity = 161/197 (81.73%), Postives = 162/197 (82.23%), Query Frame = 0


Query: 1   MNTARFIKCVTVGDGAVGKTCMLISYTTNTFPTDYVPTVFDNFSANVVADGSTVNLGLWD 60
           MNTARF+KCVTVGDGAVGKTCMLISYTTNTFPTDYVPTVFDNFSANVV DGSTVNLGLWD
Sbjct: 1   MNTARFLKCVTVGDGAVGKTCMLISYTTNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLSFSLISKPSYENIFKKWIPELKHYAPNVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLLSFSLISKPSYENIFKKWIPELKHYAPNVPIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLSFSLISKPSYENIFKKWIPELKHYAPNVPIVLVGTKL 120

Query: 121 DLRDDRQYLIDHPTATPITTAE---------------------------------VALRP 163
           DLRDDRQYLIDHPTATPITTAE                                 VALRP
Sbjct: 121 DLRDDRQYLIDHPTATPITTAEGEELRRMIGGIAYIECSSKTQKNVKNVFDAAIKVALRP 180

[Close]

BLAST of Cp4.1LG10g05230 vs. NCBI nr
Match: KAB5534061.1 (hypothetical protein DKX38_017147 [Salix brachista] >KAB5534074.1 hypothetical protein DKX38_017160 [Salix brachista])

HSP 1 Score: 291 bits (746), Expect = 1.55e-98
Identity = 146/183 (79.78%), Postives = 155/183 (84.70%), Query Frame = 0


Query: 1   MNTARFIKCVTVGDGAVGKTCMLISYTTNTFPTDYVPTVFDNFSANVVADGSTVNLGLWD 60
           M+TARFIKCVTVGDGAVGKTCMLISYT+NTFPTDYVPTVFDNFSANVV DGSTVN+GLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNIGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLSFSLISKPSYENIFKKWIPELKHYAPNVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLL+FSLISK SYENI KKWIPEL+HYAPNVPIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWIPELRHYAPNVPIVLVGTKL 120

Query: 121 DLRDDRQYLIDHPTATPITTAE--------------------VALRPPRPKKKPCKQRTC 163
           DLR+D+QYL DHP AT ITTA+                    VALRPP+PKKKP KQRTC
Sbjct: 121 DLREDKQYLTDHPGATQITTAQAKCSSKTQQNVKTVFDAAIKVALRPPKPKKKPRKQRTC 180

[Close]

BLAST of Cp4.1LG10g05230 vs. NCBI nr
Match: XP_034932397.1 (rac-like GTP-binding protein RAC13 [Populus alba] >XP_034932398.1 rac-like GTP-binding protein RAC13 [Populus alba] >TKS02808.1 RAC-like GTP binding protein ARAC2 [Populus alba])

HSP 1 Score: 291 bits (745), Expect = 3.44e-98
Identity = 147/196 (75.00%), Postives = 157/196 (80.10%), Query Frame = 0


Query: 1   MNTARFIKCVTVGDGAVGKTCMLISYTTNTFPTDYVPTVFDNFSANVVADGSTVNLGLWD 60
           M+TARFIKCVTVGDGAVGKTCMLISYT+NTFPTDYVPTVFDNFSANVV DGSTVN+GLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNIGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLSFSLISKPSYENIFKKWIPELKHYAPNVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLL+FSLISK SYENI+KKWIPEL+HYAPNVPIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIYKKWIPELRHYAPNVPIVLVGTKL 120

Query: 121 DLRDDRQYLIDHPTATPITTAE---------------------------------VALRP 163
           DLR+D+QYLIDHP A PITTA+                                 VALRP
Sbjct: 121 DLREDKQYLIDHPGAAPITTAQGEELKKMIGAVIYIECSSKTQQNVKTVFDAAIKVALRP 180

[Close]

BLAST of Cp4.1LG10g05230 vs. NCBI nr
Match: XP_022926975.1 (rac-like GTP-binding protein RAC13 [Cucurbita moschata] >XP_023003127.1 rac-like GTP-binding protein RAC13 [Cucurbita maxima] >XP_023517161.1 rac-like GTP-binding protein RAC13 [Cucurbita pepo subsp. pepo] >KAG6594570.1 Rac-like GTP-binding protein 7, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026543.1 Rac-like GTP-binding protein 7 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 291 bits (744), Expect = 5.06e-98
Identity = 151/197 (76.65%), Postives = 158/197 (80.20%), Query Frame = 0


Query: 1   MNTARFIKCVTVGDGAVGKTCMLISYTTNTFPTDYVPTVFDNFSANVVADGSTVNLGLWD 60
           M+TARFIKCVTVGDGAVGKTCMLISYT+NTFPTDYVPTVFDNFSANVV DGSTVNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLSFSLISKPSYENIFKKWIPELKHYAPNVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLL+FSLISK SYENIFKKWIPELKHYAPNVPI+LVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIFKKWIPELKHYAPNVPIILVGTKL 120

Query: 121 DLRDDRQYLIDHPTATPITTAE---------------------------------VALRP 163
           DLRDDRQYL+DHP A+PITTA+                                 VALRP
Sbjct: 121 DLRDDRQYLMDHPGASPITTAQGEELRKMIGAVTYIECSSKTQKNVKNVFDAAIKVALRP 180

[Close]

BLAST of Cp4.1LG10g05230 vs. ExPASy TrEMBL
Match: A0A6J1ED98 (rac-like GTP-binding protein RAC13 OS=Cucurbita moschata OX=3662 GN=LOC111433128 PE=3 SV=1)

HSP 1 Score: 312 bits (800), Expect = 7.16e-107
Identity = 161/197 (81.73%), Postives = 162/197 (82.23%), Query Frame = 0


Query: 1   MNTARFIKCVTVGDGAVGKTCMLISYTTNTFPTDYVPTVFDNFSANVVADGSTVNLGLWD 60
           MNTARF+KCVTVGDGAVGKTCMLISYTTNTFPTDYVPTVFDNFSANVV DGSTVNLGLWD
Sbjct: 1   MNTARFLKCVTVGDGAVGKTCMLISYTTNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLSFSLISKPSYENIFKKWIPELKHYAPNVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLLSFSLISKPSYENIFKKWIPELKHYAPNVPIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLSFSLISKPSYENIFKKWIPELKHYAPNVPIVLVGTKL 120

Query: 121 DLRDDRQYLIDHPTATPITTAE---------------------------------VALRP 163
           DLRDDRQYLIDHPTATPITTAE                                 VALRP
Sbjct: 121 DLRDDRQYLIDHPTATPITTAEGEELRRMIGGIAYIECSSKTQKNVKNVFDAAIKVALRP 180

[Close]

BLAST of Cp4.1LG10g05230 vs. ExPASy TrEMBL
Match: A0A5N5KUG7 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_017147 PE=3 SV=1)

HSP 1 Score: 291 bits (746), Expect = 7.49e-99
Identity = 146/183 (79.78%), Postives = 155/183 (84.70%), Query Frame = 0


Query: 1   MNTARFIKCVTVGDGAVGKTCMLISYTTNTFPTDYVPTVFDNFSANVVADGSTVNLGLWD 60
           M+TARFIKCVTVGDGAVGKTCMLISYT+NTFPTDYVPTVFDNFSANVV DGSTVN+GLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNIGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLSFSLISKPSYENIFKKWIPELKHYAPNVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLL+FSLISK SYENI KKWIPEL+HYAPNVPIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWIPELRHYAPNVPIVLVGTKL 120

Query: 121 DLRDDRQYLIDHPTATPITTAE--------------------VALRPPRPKKKPCKQRTC 163
           DLR+D+QYL DHP AT ITTA+                    VALRPP+PKKKP KQRTC
Sbjct: 121 DLREDKQYLTDHPGATQITTAQAKCSSKTQQNVKTVFDAAIKVALRPPKPKKKPRKQRTC 180

[Close]

BLAST of Cp4.1LG10g05230 vs. ExPASy TrEMBL
Match: A0A6M2EZM8 (Uncharacterized protein OS=Populus davidiana OX=266767 PE=3 SV=1)

HSP 1 Score: 291 bits (745), Expect = 1.67e-98
Identity = 147/196 (75.00%), Postives = 157/196 (80.10%), Query Frame = 0


Query: 1   MNTARFIKCVTVGDGAVGKTCMLISYTTNTFPTDYVPTVFDNFSANVVADGSTVNLGLWD 60
           M+TARFIKCVTVGDGAVGKTCMLISYT+NTFPTDYVPTVFDNFSANVV DGSTVN+GLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNIGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLSFSLISKPSYENIFKKWIPELKHYAPNVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLL+FSLISK SYENI+KKWIPEL+HYAPNVPIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIYKKWIPELRHYAPNVPIVLVGTKL 120

Query: 121 DLRDDRQYLIDHPTATPITTAE---------------------------------VALRP 163
           DLR+D+QYLIDHP A PITTA+                                 VALRP
Sbjct: 121 DLREDKQYLIDHPGAAPITTAQGEELKKMIGAVIYIECSSKTQQNVKTVFDAAIKVALRP 180

[Close]

BLAST of Cp4.1LG10g05230 vs. ExPASy TrEMBL
Match: A0A4U5PYV4 (RAC-like GTP binding protein ARAC2 OS=Populus alba OX=43335 GN=D5086_0000159400 PE=3 SV=1)

HSP 1 Score: 291 bits (745), Expect = 1.67e-98
Identity = 147/196 (75.00%), Postives = 157/196 (80.10%), Query Frame = 0


Query: 1   MNTARFIKCVTVGDGAVGKTCMLISYTTNTFPTDYVPTVFDNFSANVVADGSTVNLGLWD 60
           M+TARFIKCVTVGDGAVGKTCMLISYT+NTFPTDYVPTVFDNFSANVV DGSTVN+GLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNIGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLSFSLISKPSYENIFKKWIPELKHYAPNVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLL+FSLISK SYENI+KKWIPEL+HYAPNVPIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIYKKWIPELRHYAPNVPIVLVGTKL 120

Query: 121 DLRDDRQYLIDHPTATPITTAE---------------------------------VALRP 163
           DLR+D+QYLIDHP A PITTA+                                 VALRP
Sbjct: 121 DLREDKQYLIDHPGAAPITTAQGEELKKMIGAVIYIECSSKTQQNVKTVFDAAIKVALRP 180

[Close]

BLAST of Cp4.1LG10g05230 vs. ExPASy TrEMBL
Match: A0A6J1KLK2 (rac-like GTP-binding protein RAC13 OS=Cucurbita maxima OX=3661 GN=LOC111496833 PE=3 SV=1)

HSP 1 Score: 291 bits (744), Expect = 2.45e-98
Identity = 151/197 (76.65%), Postives = 158/197 (80.20%), Query Frame = 0


Query: 1   MNTARFIKCVTVGDGAVGKTCMLISYTTNTFPTDYVPTVFDNFSANVVADGSTVNLGLWD 60
           M+TARFIKCVTVGDGAVGKTCMLISYT+NTFPTDYVPTVFDNFSANVV DGSTVNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLSFSLISKPSYENIFKKWIPELKHYAPNVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLL+FSLISK SYENIFKKWIPELKHYAPNVPI+LVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIFKKWIPELKHYAPNVPIILVGTKL 120

Query: 121 DLRDDRQYLIDHPTATPITTAE---------------------------------VALRP 163
           DLRDDRQYL+DHP A+PITTA+                                 VALRP
Sbjct: 121 DLRDDRQYLMDHPGASPITTAQGEELRKMIGAVTYIECSSKTQKNVKNVFDAAIKVALRP 180

[Close]

BLAST of Cp4.1LG10g05230 vs. TAIR 10
Match: AT5G45970.1 (RAC-like 2 )

HSP 1 Score: 266.2 bits (679), Expect = 1.8e-71
Identity = 135/186 (72.58%), Postives = 144/186 (77.42%), Query Frame = 0


Query: 1   MNTARFIKCVTVGDGAVGKTCMLISYTTNTFPTDYVPTVFDNFSANVVADGSTVNLGLWD 60
           M+TARFIKCVTVGDGAVGKTCMLISYT+NTFPTDYVPTVFDNFSANVV DGSTVNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLSFSLISKPSYENIFKKWIPELKHYAPNVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLL+FSLISK SYENI KKW+PELKHYAP +PIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKL 120

Query: 121 DLRDDRQYLIDHPTATPITTAE---------------------------------VALRP 154
           DLRDD+Q+L DHP A  ITTA+                                 VALRP
Sbjct: 121 DLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAIRVALRP 180

[Close]

BLAST of Cp4.1LG10g05230 vs. TAIR 10
Match: AT3G51300.1 (RHO-related protein from plants 1 )

HSP 1 Score: 265.4 bits (677), Expect = 3.0e-71
Identity = 133/197 (67.51%), Postives = 150/197 (76.14%), Query Frame = 0


Query: 1   MNTARFIKCVTVGDGAVGKTCMLISYTTNTFPTDYVPTVFDNFSANVVADGSTVNLGLWD 60
           M+ +RF+KCVTVGDGAVGKTC+LISYT+NTFPTDYVPTVFDNFSANVV +GSTVNLGLWD
Sbjct: 1   MSASRFVKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLSFSLISKPSYENIFKKWIPELKHYAPNVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+L+FSLISK SYEN+ KKWIPELKHYAP VPIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 120

Query: 121 DLRDDRQYLIDHPTATPITTAE---------------------------------VALRP 164
           DLRDD+Q+ IDHP A PITTA+                                 V L+P
Sbjct: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKQIGAPTYIECSSKTQENVKAVFDAAIRVVLQP 180

[Close]

BLAST of Cp4.1LG10g05230 vs. TAIR 10
Match: AT2G17800.1 (Arabidopsis RAC-like 1 )

HSP 1 Score: 264.6 bits (675), Expect = 5.2e-71
Identity = 133/197 (67.51%), Postives = 150/197 (76.14%), Query Frame = 0


Query: 1   MNTARFIKCVTVGDGAVGKTCMLISYTTNTFPTDYVPTVFDNFSANVVADGSTVNLGLWD 60
           M+ +RFIKCVTVGDGAVGKTC+LISYT+NTFPTDYVPTVFDNFSANVV +G+TVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLSFSLISKPSYENIFKKWIPELKHYAPNVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+L+FSLISK SYEN+ KKWIPELKHYAP VPIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 120

Query: 121 DLRDDRQYLIDHPTATPITTAE---------------------------------VALRP 164
           DLRDD+Q+ IDHP A PITTA+                                 V L+P
Sbjct: 121 DLRDDKQFFIDHPGAVPITTAQGEELKKLIGAPAYIECSSKTQENVKGVFDAAIRVVLQP 180

[Close]

BLAST of Cp4.1LG10g05230 vs. TAIR 10
Match: AT2G17800.2 (Arabidopsis RAC-like 1 )

HSP 1 Score: 264.6 bits (675), Expect = 5.2e-71
Identity = 133/197 (67.51%), Postives = 150/197 (76.14%), Query Frame = 0


Query: 1   MNTARFIKCVTVGDGAVGKTCMLISYTTNTFPTDYVPTVFDNFSANVVADGSTVNLGLWD 60
           M+ +RFIKCVTVGDGAVGKTC+LISYT+NTFPTDYVPTVFDNFSANVV +G+TVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLSFSLISKPSYENIFKKWIPELKHYAPNVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+L+FSLISK SYEN+ KKWIPELKHYAP VPIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 120

Query: 121 DLRDDRQYLIDHPTATPITTAE---------------------------------VALRP 164
           DLRDD+Q+ IDHP A PITTA+                                 V L+P
Sbjct: 121 DLRDDKQFFIDHPGAVPITTAQGEELKKLIGAPAYIECSSKTQENVKGVFDAAIRVVLQP 180

[Close]

BLAST of Cp4.1LG10g05230 vs. TAIR 10
Match: AT4G35950.1 (RAC-like 6 )

HSP 1 Score: 262.3 bits (669), Expect = 2.6e-70
Identity = 132/197 (67.01%), Postives = 149/197 (75.63%), Query Frame = 0


Query: 1   MNTARFIKCVTVGDGAVGKTCMLISYTTNTFPTDYVPTVFDNFSANVVADGSTVNLGLWD 60
           M+ +RFIKCVTVGDGAVGKTC+LISYT+NTFPTDYVPTVFDNFSANVV +G+TVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLSFSLISKPSYENIFKKWIPELKHYAPNVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+L+FSLISK SYEN+ KKWIPELKHYAP VPIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 120

Query: 121 DLRDDRQYLIDHPTATPITTAE---------------------------------VALRP 164
           DLRDD+Q+ IDHP A PITT +                                 V L+P
Sbjct: 121 DLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQP 180

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g05230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q41253	5.6e-78	73.47	Rac-like GTP-binding protein RAC13 OS=Gossypium hirsutum OX=3635 GN=RAC13 PE=2 S...	[more]
Q40220	4.9e-74	71.94	Rac-like GTP-binding protein RAC2 OS=Lotus japonicus OX=34305 GN=RAC2 PE=2 SV=1	[more]
Q41254	4.9e-74	70.41	Rac-like GTP-binding protein RAC9 OS=Gossypium hirsutum OX=3635 GN=RAC9 PE=2 SV=...	[more]
Q6Z7L8	3.9e-71	69.54	Rac-like GTP-binding protein 7 OS=Oryza sativa subsp. japonica OX=39947 GN=RAC7 ...	[more]
Q38903	2.5e-70	72.58	Rac-like GTP-binding protein ARAC2 OS=Arabidopsis thaliana OX=3702 GN=ARAC2 PE=1...	[more]

BLAST of Cp4.1LG10g05230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023544294.1	2.58e-109	83.16	rac-like GTP-binding protein RAC13 [Cucurbita pepo subsp. pepo]	[more]
XP_022925841.1	1.48e-106	81.73	rac-like GTP-binding protein RAC13 [Cucurbita moschata] >KAG6581340.1 Rac-like G...	[more]
KAB5534061.1	1.55e-98	79.78	hypothetical protein DKX38_017147 [Salix brachista] >KAB5534074.1 hypothetical p...	[more]
XP_034932397.1	3.44e-98	75.00	rac-like GTP-binding protein RAC13 [Populus alba] >XP_034932398.1 rac-like GTP-b...	[more]
XP_022926975.1	5.06e-98	76.65	rac-like GTP-binding protein RAC13 [Cucurbita moschata] >XP_023003127.1 rac-like...	[more]

BLAST of Cp4.1LG10g05230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ED98	7.16e-107	81.73	rac-like GTP-binding protein RAC13 OS=Cucurbita moschata OX=3662 GN=LOC111433128...	[more]
A0A5N5KUG7	7.49e-99	79.78	Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_017147 PE=3 SV=1	[more]
A0A6M2EZM8	1.67e-98	75.00	Uncharacterized protein OS=Populus davidiana OX=266767 PE=3 SV=1	[more]
A0A4U5PYV4	1.67e-98	75.00	RAC-like GTP binding protein ARAC2 OS=Populus alba OX=43335 GN=D5086_0000159400 ...	[more]
A0A6J1KLK2	2.45e-98	76.65	rac-like GTP-binding protein RAC13 OS=Cucurbita maxima OX=3661 GN=LOC111496833 P...	[more]

BLAST of Cp4.1LG10g05230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G45970.1	1.8e-71	72.58	RAC-like 2	[more]
AT3G51300.1	3.0e-71	67.51	RHO-related protein from plants 1	[more]
AT2G17800.1	5.2e-71	67.51	Arabidopsis RAC-like 1	[more]
AT2G17800.2	5.2e-71	67.51	Arabidopsis RAC-like 1	[more]
AT4G35950.1	2.6e-70	67.01	RAC-like 6	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 109..122 score: 55.07 coord: 47..69 score: 47.92 coord: 7..28 score: 44.94 coord: 30..46 score: 32.14
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 4..154 e-value: 4.3E-11 score: 40.3
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 7..152 e-value: 7.6E-12 score: 38.2
None	No IPR available	PANTHER	PTHR24072:SF300	RAC-LIKE GTP-BINDING PROTEIN ARAC2	coord: 1..142
None	No IPR available	PROSITE	PS51420	RHO	coord: 1..163 score: 19.951279
None	No IPR available	PROSITE	PS51419	RAB	coord: 1..163 score: 15.254979
None	No IPR available	CDD	cd04133	Rop_like	coord: 6..142 e-value: 3.09047E-106 score: 299.069
IPR001806	Small GTPase	SMART	SM00174	rho_sub_3	coord: 9..147 e-value: 3.4E-73 score: 259.2
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 8..127 e-value: 1.6E-42 score: 144.8
IPR001806	Small GTPase	PROSITE	PS51421	RAS	coord: 2..163 score: 11.829123
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 1..149 e-value: 1.5E-53 score: 182.8
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 6..129
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 7..125 e-value: 1.1E-32 score: 111.0
IPR003578	Small GTPase Rho	PANTHER	PTHR24072	RHO FAMILY GTPASE	coord: 1..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g05230.1	Cp4.1LG10g05230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007015	actin filament organization
biological_process	GO:0030865	cortical cytoskeleton organization
biological_process	GO:0007163	establishment or maintenance of cell polarity
biological_process	GO:0032956	regulation of actin cytoskeleton organization
biological_process	GO:0008360	regulation of cell shape
biological_process	GO:0090379	secondary cell wall biogenesis involved in seed trichome differentiation
biological_process	GO:0007264	small GTPase mediated signal transduction
cellular_component	GO:0005938	cell cortex
cellular_component	GO:0042995	cell projection
cellular_component	GO:0031410	cytoplasmic vesicle
cellular_component	GO:0005856	cytoskeleton
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0019901	protein kinase binding