Cp4.1LG08g09790 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG08g09790
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	40S ribosomal protein S17-like
Location	Cp4.1LG08: 7703260 .. 7703679 (-)
RNA-Seq Expression	Cp4.1LG08g09790
Synteny	Cp4.1LG08g09790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGACGCGTTCGCACAAAAACAGTCAAGAAATCTTCCCGTCAAGTCATCGAGCGCTACTACTCGCGCATGACTCTTGACTTCCATACGAACAAGAAAATTCTGGAAGAGGTCGCCATTATCCCCTCCAAGAGACTCCGAAACAAGATAGCCGGATTCTCCACTCACCTCATGAAGCGGATCCAAAAGGGACCTGTTCGCGGCATTTCTCTGAAGCTTCAAGAGGAAGAGCGCGAGCGCCGAATGGACTTCGTCCCTGATGTCTCCGCCATTAAAACCGATCAAATCGAGGTCGACAGGGAGACTCTCGATATGCTTTCTGCTCTTGGAATGACCGATATTCCGGGGCTAGTTCAGGTCGATCCGACTGTGCCGCAGCAGGTTGCATTTGGATTGGGCGGTCGTGGTAGGAGGTACTGA

mRNA sequence

ATGGGACGCGTTCGCACAAAAACAGTCAAGAAATCTTCCCGTCAAGTCATCGAGCGCTACTACTCGCGCATGACTCTTGACTTCCATACGAACAAGAAAATTCTGGAAGAGGTCGCCATTATCCCCTCCAAGAGACTCCGAAACAAGATAGCCGGATTCTCCACTCACCTCATGAAGCGGATCCAAAAGGGACCTGTTCGCGGCATTTCTCTGAAGCTTCAAGAGGAAGAGCGCGAGCGCCGAATGGACTTCGTCCCTGATGTCTCCGCCATTAAAACCGATCAAATCGAGGTCGACAGGGAGACTCTCGATATGCTTTCTGCTCTTGGAATGACCGATATTCCGGGGCTAGTTCAGGTCGATCCGACTGTGCCGCAGCAGGTTGCATTTGGATTGGGCGGTCGTGGTAGGAGGTACTGA

Coding sequence (CDS)

ATGGGACGCGTTCGCACAAAAACAGTCAAGAAATCTTCCCGTCAAGTCATCGAGCGCTACTACTCGCGCATGACTCTTGACTTCCATACGAACAAGAAAATTCTGGAAGAGGTCGCCATTATCCCCTCCAAGAGACTCCGAAACAAGATAGCCGGATTCTCCACTCACCTCATGAAGCGGATCCAAAAGGGACCTGTTCGCGGCATTTCTCTGAAGCTTCAAGAGGAAGAGCGCGAGCGCCGAATGGACTTCGTCCCTGATGTCTCCGCCATTAAAACCGATCAAATCGAGGTCGACAGGGAGACTCTCGATATGCTTTCTGCTCTTGGAATGACCGATATTCCGGGGCTAGTTCAGGTCGATCCGACTGTGCCGCAGCAGGTTGCATTTGGATTGGGCGGTCGTGGTAGGAGGTACTGA

Protein sequence

MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGLVQVDPTVPQQVAFGLGGRGRRY

Homology

[Close]

BLAST of Cp4.1LG08g09790 vs. ExPASy Swiss-Prot
Match: P49215 (40S ribosomal protein S17 OS=Solanum lycopersicum OX=4081 GN=RPS17 PE=2 SV=3)

HSP 1 Score: 223.0 bits (567), Expect = 2.1e-57
Identity = 121/145 (83.45%), Postives = 128/145 (88.28%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKTD IEVD+ETLDMLSALGM+D+PG+V+ 
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDMLSALGMSDLPGVVK- 120

Query: 121 DPTVPQQVAF------GLGGRGRRY 140
               PQ VA       G GG GR+Y
Sbjct: 121 QAAEPQAVAALPSYGRGGGGFGRKY 144

[Close]

BLAST of Cp4.1LG08g09790 vs. ExPASy Swiss-Prot
Match: Q9LZ17 (40S ribosomal protein S17-4 OS=Arabidopsis thaliana OX=3702 GN=RPS17D PE=2 SV=3)

HSP 1 Score: 219.2 bits (557), Expect = 3.0e-56
Identity = 115/141 (81.56%), Postives = 126/141 (89.36%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKTD+I+VD+ETL+ML++LGM+D PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 DP--TVPQQVAFGLGGRGRRY 140
           +P   +    AFG G   RRY
Sbjct: 121 EPQQAMAPIAAFGGGRAPRRY 141

[Close]

BLAST of Cp4.1LG08g09790 vs. ExPASy Swiss-Prot
Match: P49205 (40S ribosomal protein S17-1 OS=Arabidopsis thaliana OX=3702 GN=RPS17A PE=2 SV=3)

HSP 1 Score: 216.1 bits (549), Expect = 2.5e-55
Identity = 115/141 (81.56%), Postives = 125/141 (88.65%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKTD+I+VD+ETL+ML++LGM+D  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAV 120

Query: 121 DP--TVPQQVAFGLGGRGRRY 140
           DP   +    AFG G   RRY
Sbjct: 121 DPQQAMAPIPAFGGGRAPRRY 141

[Close]

BLAST of Cp4.1LG08g09790 vs. ExPASy Swiss-Prot
Match: Q9SJ36 (40S ribosomal protein S17-2 OS=Arabidopsis thaliana OX=3702 GN=RPS17B PE=2 SV=3)

HSP 1 Score: 215.7 bits (548), Expect = 3.3e-55
Identity = 113/140 (80.71%), Postives = 123/140 (87.86%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKTD+I+VD+ETL+ML++LGM+D  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAV 120

Query: 121 DPTVPQQVAFGLGGRG-RRY 140
           +P          GGR  RRY
Sbjct: 121 EPQQAMAPIAAFGGRAPRRY 140

[Close]

BLAST of Cp4.1LG08g09790 vs. ExPASy Swiss-Prot
Match: Q9SQZ1 (40S ribosomal protein S17-3 OS=Arabidopsis thaliana OX=3702 GN=RPS17C PE=2 SV=3)

HSP 1 Score: 208.4 bits (529), Expect = 5.3e-53
Identity = 106/121 (87.60%), Postives = 116/121 (95.87%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIK D ++VD+ETL+ML++LGM+DI G+ QV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQV 120

Query: 121 D 122
           +
Sbjct: 121 E 121

[Close]

BLAST of Cp4.1LG08g09790 vs. NCBI nr
Match: XP_023539023.1 (40S ribosomal protein S17-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 268 bits (686), Expect = 1.81e-90
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGLVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGLVQV 120

Query: 121 DPTVPQQVAFGLGGRGRRY 139
           DPTVPQQVAFGLGGRGRRY
Sbjct: 121 DPTVPQQVAFGLGGRGRRY 139

[Close]

BLAST of Cp4.1LG08g09790 vs. NCBI nr
Match: XP_022938121.1 (40S ribosomal protein S17-like [Cucurbita moschata] >KAG6596593.1 40S ribosomal protein S17-4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 268 bits (684), Expect = 3.66e-90
Identity = 138/139 (99.28%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPG+VQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQV 120

Query: 121 DPTVPQQVAFGLGGRGRRY 139
           DPTVPQQVAFGLGGRGRRY
Sbjct: 121 DPTVPQQVAFGLGGRGRRY 139

[Close]

BLAST of Cp4.1LG08g09790 vs. NCBI nr
Match: XP_038904935.1 (40S ribosomal protein S17-like [Benincasa hispida])

HSP 1 Score: 263 bits (672), Expect = 2.48e-88
Identity = 134/139 (96.40%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD+SA+KTDQIEVD+ETLDMLSALGM DIPGLVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDISAVKTDQIEVDKETLDMLSALGMNDIPGLVQV 120

Query: 121 DPTVPQQVAFGLGGRGRRY 139
           DPTVPQQV FGLGGRGRRY
Sbjct: 121 DPTVPQQVGFGLGGRGRRY 139

[Close]

BLAST of Cp4.1LG08g09790 vs. NCBI nr
Match: XP_008442886.1 (PREDICTED: 40S ribosomal protein S17-like [Cucumis melo] >KAA0043841.1 40S ribosomal protein S17-like [Cucumis melo var. makuwa] >TYK25293.1 40S ribosomal protein S17-like [Cucumis melo var. makuwa])

HSP 1 Score: 262 bits (670), Expect = 5.00e-88
Identity = 135/139 (97.12%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAIKT+QIEVD+ETLDMLSALGM DIPGLVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120

Query: 121 DPTVPQQVAFGLGGRGRRY 139
           DPTVPQQV FGLGGRGRRY
Sbjct: 121 DPTVPQQVGFGLGGRGRRY 139

[Close]

BLAST of Cp4.1LG08g09790 vs. NCBI nr
Match: XP_023005133.1 (40S ribosomal protein S17-like [Cucurbita maxima])

HSP 1 Score: 261 bits (668), Expect = 1.01e-87
Identity = 136/139 (97.84%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPG+VQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQV 120

Query: 121 DPTVPQQVAFGLGGRGRRY 139
           D TVPQQVAFGLGGRG RY
Sbjct: 121 DRTVPQQVAFGLGGRGGRY 139

[Close]

BLAST of Cp4.1LG08g09790 vs. ExPASy TrEMBL
Match: A0A6J1FC93 (40S ribosomal protein S17-like OS=Cucurbita moschata OX=3662 GN=LOC111444300 PE=3 SV=1)

HSP 1 Score: 268 bits (684), Expect = 1.77e-90
Identity = 138/139 (99.28%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPG+VQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQV 120

Query: 121 DPTVPQQVAFGLGGRGRRY 139
           DPTVPQQVAFGLGGRGRRY
Sbjct: 121 DPTVPQQVAFGLGGRGRRY 139

[Close]

BLAST of Cp4.1LG08g09790 vs. ExPASy TrEMBL
Match: A0A5A7TQK2 (40S ribosomal protein S17-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004290 PE=3 SV=1)

HSP 1 Score: 262 bits (670), Expect = 2.42e-88
Identity = 135/139 (97.12%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAIKT+QIEVD+ETLDMLSALGM DIPGLVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120

Query: 121 DPTVPQQVAFGLGGRGRRY 139
           DPTVPQQV FGLGGRGRRY
Sbjct: 121 DPTVPQQVGFGLGGRGRRY 139

[Close]

BLAST of Cp4.1LG08g09790 vs. ExPASy TrEMBL
Match: A0A1S3B6R7 (40S ribosomal protein S17-like OS=Cucumis melo OX=3656 GN=LOC103486651 PE=3 SV=1)

HSP 1 Score: 262 bits (670), Expect = 2.42e-88
Identity = 135/139 (97.12%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAIKT+QIEVD+ETLDMLSALGM DIPGLVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120

Query: 121 DPTVPQQVAFGLGGRGRRY 139
           DPTVPQQV FGLGGRGRRY
Sbjct: 121 DPTVPQQVGFGLGGRGRRY 139

[Close]

BLAST of Cp4.1LG08g09790 vs. ExPASy TrEMBL
Match: A0A6J1L1C6 (40S ribosomal protein S17-like OS=Cucurbita maxima OX=3661 GN=LOC111498263 PE=3 SV=1)

HSP 1 Score: 261 bits (668), Expect = 4.89e-88
Identity = 136/139 (97.84%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPG+VQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQV 120

Query: 121 DPTVPQQVAFGLGGRGRRY 139
           D TVPQQVAFGLGGRG RY
Sbjct: 121 DRTVPQQVAFGLGGRGGRY 139

[Close]

BLAST of Cp4.1LG08g09790 vs. ExPASy TrEMBL
Match: A0A0A0LB02 (40S ribosomal protein S17 OS=Cucumis sativus OX=3659 GN=Csa_3G778310 PE=3 SV=1)

HSP 1 Score: 261 bits (668), Expect = 4.89e-88
Identity = 134/139 (96.40%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMT+DFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTIDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAIKT+QIEVD+ETLDMLSALGM DIPGLVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120

Query: 121 DPTVPQQVAFGLGGRGRRY 139
           DPTVPQQV FGLGGRGRRY
Sbjct: 121 DPTVPQQVGFGLGGRGRRY 139

[Close]

BLAST of Cp4.1LG08g09790 vs. TAIR 10
Match: AT5G04800.1 (Ribosomal S17 family protein )

HSP 1 Score: 219.2 bits (557), Expect = 2.1e-57
Identity = 115/141 (81.56%), Postives = 126/141 (89.36%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKTD+I+VD+ETL+ML++LGM+D PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 DP--TVPQQVAFGLGGRGRRY 140
           +P   +    AFG G   RRY
Sbjct: 121 EPQQAMAPIAAFGGGRAPRRY 141

[Close]

BLAST of Cp4.1LG08g09790 vs. TAIR 10
Match: AT5G04800.2 (Ribosomal S17 family protein )

HSP 1 Score: 219.2 bits (557), Expect = 2.1e-57
Identity = 115/141 (81.56%), Postives = 126/141 (89.36%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKTD+I+VD+ETL+ML++LGM+D PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 DP--TVPQQVAFGLGGRGRRY 140
           +P   +    AFG G   RRY
Sbjct: 121 EPQQAMAPIAAFGGGRAPRRY 141

[Close]

BLAST of Cp4.1LG08g09790 vs. TAIR 10
Match: AT5G04800.3 (Ribosomal S17 family protein )

HSP 1 Score: 219.2 bits (557), Expect = 2.1e-57
Identity = 115/141 (81.56%), Postives = 126/141 (89.36%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKTD+I+VD+ETL+ML++LGM+D PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 DP--TVPQQVAFGLGGRGRRY 140
           +P   +    AFG G   RRY
Sbjct: 121 EPQQAMAPIAAFGGGRAPRRY 141

[Close]

BLAST of Cp4.1LG08g09790 vs. TAIR 10
Match: AT5G04800.4 (Ribosomal S17 family protein )

HSP 1 Score: 219.2 bits (557), Expect = 2.1e-57
Identity = 115/141 (81.56%), Postives = 126/141 (89.36%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKTD+I+VD+ETL+ML++LGM+D PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 DP--TVPQQVAFGLGGRGRRY 140
           +P   +    AFG G   RRY
Sbjct: 121 EPQQAMAPIAAFGGGRAPRRY 141

[Close]

BLAST of Cp4.1LG08g09790 vs. TAIR 10
Match: AT2G04390.1 (Ribosomal S17 family protein )

HSP 1 Score: 216.1 bits (549), Expect = 1.8e-56
Identity = 115/141 (81.56%), Postives = 125/141 (88.65%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKTD+I+VD+ETL+ML++LGM+D  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAV 120

Query: 121 DP--TVPQQVAFGLGGRGRRY 140
           DP   +    AFG G   RRY
Sbjct: 121 DPQQAMAPIPAFGGGRAPRRY 141

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g09790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49215	2.1e-57	83.45	40S ribosomal protein S17 OS=Solanum lycopersicum OX=4081 GN=RPS17 PE=2 SV=3	[more]
Q9LZ17	3.0e-56	81.56	40S ribosomal protein S17-4 OS=Arabidopsis thaliana OX=3702 GN=RPS17D PE=2 SV=3	[more]
P49205	2.5e-55	81.56	40S ribosomal protein S17-1 OS=Arabidopsis thaliana OX=3702 GN=RPS17A PE=2 SV=3	[more]
Q9SJ36	3.3e-55	80.71	40S ribosomal protein S17-2 OS=Arabidopsis thaliana OX=3702 GN=RPS17B PE=2 SV=3	[more]
Q9SQZ1	5.3e-53	87.60	40S ribosomal protein S17-3 OS=Arabidopsis thaliana OX=3702 GN=RPS17C PE=2 SV=3	[more]

BLAST of Cp4.1LG08g09790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023539023.1	1.81e-90	100.00	40S ribosomal protein S17-like [Cucurbita pepo subsp. pepo]	[more]
XP_022938121.1	3.66e-90	99.28	40S ribosomal protein S17-like [Cucurbita moschata] >KAG6596593.1 40S ribosomal ...	[more]
XP_038904935.1	2.48e-88	96.40	40S ribosomal protein S17-like [Benincasa hispida]	[more]
XP_008442886.1	5.00e-88	97.12	PREDICTED: 40S ribosomal protein S17-like [Cucumis melo] >KAA0043841.1 40S ribos...	[more]
XP_023005133.1	1.01e-87	97.84	40S ribosomal protein S17-like [Cucurbita maxima]	[more]

BLAST of Cp4.1LG08g09790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FC93	1.77e-90	99.28	40S ribosomal protein S17-like OS=Cucurbita moschata OX=3662 GN=LOC111444300 PE=...	[more]
A0A5A7TQK2	2.42e-88	97.12	40S ribosomal protein S17-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3B6R7	2.42e-88	97.12	40S ribosomal protein S17-like OS=Cucumis melo OX=3656 GN=LOC103486651 PE=3 SV=1	[more]
A0A6J1L1C6	4.89e-88	97.84	40S ribosomal protein S17-like OS=Cucurbita maxima OX=3661 GN=LOC111498263 PE=3 ...	[more]
A0A0A0LB02	4.89e-88	96.40	40S ribosomal protein S17 OS=Cucumis sativus OX=3659 GN=Csa_3G778310 PE=3 SV=1	[more]

BLAST of Cp4.1LG08g09790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G04800.1	2.1e-57	81.56	Ribosomal S17 family protein	[more]
AT5G04800.2	2.1e-57	81.56	Ribosomal S17 family protein	[more]
AT5G04800.3	2.1e-57	81.56	Ribosomal S17 family protein	[more]
AT5G04800.4	2.1e-57	81.56	Ribosomal S17 family protein	[more]
AT2G04390.1	1.8e-56	81.56	Ribosomal S17 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001210	Ribosomal protein S17e	PFAM	PF00833	Ribosomal_S17e	coord: 1..120 e-value: 1.8E-60 score: 202.2
IPR001210	Ribosomal protein S17e	PANTHER	PTHR10732	40S RIBOSOMAL PROTEIN S17	coord: 1..139
IPR001210	Ribosomal protein S17e	HAMAP	MF_00511	Ribosomal_S17e	coord: 1..63 score: 19.982433
IPR036401	Ribosomal protein S17e-like superfamily	GENE3D	1.10.60.20		coord: 1..62 e-value: 1.0E-32 score: 113.5
IPR036401	Ribosomal protein S17e-like superfamily	SUPERFAMILY	116820	Rps17e-like	coord: 1..62
None	No IPR available	PANTHER	PTHR10732:SF5	40S RIBOSOMAL PROTEIN S17	coord: 1..139
IPR018273	Ribosomal protein S17e, conserved site	PROSITE	PS00712	RIBOSOMAL_S17E	coord: 41..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g09790.1	Cp4.1LG08g09790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome