Cp4.1LG08g07770 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG08g07770
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionGlycine cleavage T-protein family
LocationCp4.1LG08: 6118480 .. 6126564 (-)
RNA-Seq ExpressionCp4.1LG08g07770
SyntenyCp4.1LG08g07770
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTTTTGTTAAGAACAGGGAGAGAAAACCTGAAAGATGAGATAAATGGGAAGAAATCTCACTCTTAGTAAAATTGGCTAGTATACAGTAGTACATAGTACATTGAAAACAAATCAAATCCATTAAATTGGACTAAATCAAATCTAATTCAAACAACTAAATCAAATCTAAATCAATTGTAACAATTCCTCCCTCAAAACGGAAATAAATAGTAATCAGTTTATATTTGGGTCGGAACATACTCACCAATAGTTCTCTTAACTTCAAGAAAGCATTCAATTTTAGTGGTTTAGTCATCACATCAGCTAACTGTTCGTGTGTGCCACAATGCACCAACTCCACAGTGCCAGCCTTTGTGAGCTCTTGAAGGAAATGGAAACGCACATCTATGTGTTTACTCCGACCGTGCATTACTGGGTTTTTTGAAAGCTTGATAGCAGAGCTACTATCACAACGAATAATAGTTAACTTGTCTTGAATCTTACCCAATTTCTCCAACACCTTTTTTAGCCATAATGCCAGGCATGCACATGAAGCTGTAGCTATGAATTCTACCTCTGTGGAAGATAGACTTACTATTGGTTGTTTCTTTGATGACCATGATAGTGCTCCAGAACTCAATAAGAACACATAGCCTGAAGTACTCTTTCTCTCATCCAAATCTCCAGCGTAATCACTGTCTGTGTATGCAACAAAATCATCATCTCCTCCTTTCCGATAGAAAATTCCAAACCCAATTGTTCCCTTCAAATAACGTAGTACCCTTTTTGCTGCCTGTAAATGAAGCTCAGTGAGATTCTCCATATATCTACTAATCAGACTCACTACAAACATCATGTCTGGTCGAGTTGCTGTGAGATAATTAAGACTGCCTACAACTTGCTTATAGTAGGTTTTGTCCACGTTTATTCCATCTTCATCTTTCATAAGTTTGCATCCTGGAACAATAGGATTATGAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGCCGCGAGTCCAGGTGGTTCACCTCTTCCTAATAGGTCTTCCATCCTCTGGTACCTGGGCGAGAGGTTGACTTGTTGCTCTATCTCCAACTCTAGGATGTAAAGACAGTTTGCCGTACACTGAACTTGCGTGAGCAACCGTCGTCGATCATCGCGGATCCTAAGTAGCCCGCGCTTGATGGAAATGTGGCAGTCGGCCTTAACGAGTTGACCCAGGCTCACAATATTAGCCTTGAGCCTCGGGATGAAGTAGACGCTGGTCAGCTTGTGATGCTTGCCTCCCTTGTCGACGAACAGGATGGTGTCGTGCCCTTCGATCTCGACGACAGAGCCGTTGCTGAATTTTACCATCCCGCGAATCCCCGAGTCAAGCTCGCNCAGGATGGTGTCGTGCCCTTCGATCTCGACGACAGAGCCGTTGCTGAATTTTACCATCCCGCGAATCCCCGAGTCAAGCTCGCAGAACACAAACTTGGACCCGGTCATATGGTTTGTTGCCCCCGTGTCAAGGACCCATCGCCAGTGCTCTTGCTGCTCGCCTCTTTCACCGATTTGAGTGAACACTCGCTCCTCCTTCAGTTAAATTGGCTCCCCAGCCGGTGCCTTTGTTATGCACAATTGGAGCTCTTCCTCAGGTTCGACGCTCACCGGAGCAGTTATGCCGTCGTCGATTACCTCCGTGGATTTGGAATCGGAATTAGGGACGTCAGGTAGGATTGATGCAGTCACCATGAAAAGGGTCGGCTCGTCCTCCTCGGATTGAGCCACATGGGCCTTCTCGGTCGTCTCCTTACTCCTGAGCTTGCTCTAGCAATTCTTGCTCAGGTTNCCTCCTCGGATTGAGCCACATGGGCCTTCTCGGCCGTCTCCTTACTCCTGAGCTTGCTCTAGCAATTCTTGCTCAGGTGACCTCTCTTCCCACAGTACGAGCACTAGATTGGCCCGTCATCAATCGGCTCCTCCTTCTTTTGATCTGCCTCTTTCCCGTGCATGCGCCGACGAGATTTCCATGGCTTCTTACTGCCTTTGCGGCAAGAGGGCCCATTGCTCTGCCATCACGGAGCTTTAGGCGTGCAAGTCATTCCTCCTTAGTGAGGAGTAGACGACCCTCCTTGTCGACAGCTGAAACGGTATTTTTCTTCCGCTGCTCAACGTTACGCAGTCTTCCAGTCACCTCTTCTACCGCCGTTAGGTCGTTCACGTCAAGCAATGTCTCGATTGAAATCGAGACTTGCTCAAGGTGATCGGGGACGACCTGCAGCATCTTCTTCACGATTTCTGTCTTGCTGATGCTGCCACCGAGAGTGGTAATGCTGTTGGCGAGCCCCGTGATCCGCATTGAAAAATCATCGACGAATTTGCCATCCTTAAAGCGGATCTCCTAGAGCTCCTTTCGCAGCTGCTCAATGTTGGATTCCCCGCACTCGCTGTAAACCGACCCGACGGGATTTGATTCCCTCTCAGGCCGATTGCGTTGTGCGCTTGGTGGACAAAGATGCCAGCATCTCTGGGGGCACAGATCGTAATATGGCAGCGAACGCCAGCTGATCCTCCCGGTACTCAATCGTTTCTCCTTCCTCTGGCTCGACAGCGTGCCATAACCCTTGCGCCTGTACGCCCTGTCATCACGGCGTCGGCCTCTTCGTGGTGGTGATGGAGATGTCGGCACTTGGCGGCGGCTTGGAGGAGTGAGCGAACCTGCTCGAGATGGACCCCACGGTGTGTTTATTTTCGCGCTTGGCATTTTCTTCTACTCAAATCTGAGACCTGTGTTTTGTTAGGTCGACGCTCTAACCACTTGAGCTATTCAACTTGATTGTTGATAGGTTGGCTCCTCCGCAATGATATACCACCGATGACTTCAACTTGGCTCTGATACCACTTGTTGTTTTTCGATAATGGGCCAGGGAAATTATTTTCTTTTCGGTGACAGAAAATCGTTGACTGTAAGTTGTTGGAAGAAAATAAAACGCCTAAAATAAGAGAGAATTGCCTGAAATTTTGAGTGGGCTTAAAATCAGGTTGTCAAATTTTTTGAACAGATTTTCTATTTAAATATAACTTATTCTCAACGGTTGAGAGTGACCAACTAAATTCTGTGCCACTCCCTACAAAATTGCCCTCTAACACTCTGGTAATCCATAACTTTGGTAATCCATTCGACGTGTTTGTCAAATGGTCAGGTATTCAATCAACTAATCAAATCGTGTGAATCTAAATAAAGAAAAACTCAGGTTTTATCTAACAGAGCTTACATGGAGGAATTTCTTAGTTCCTACAACCTTGGCGCCACAATAAAAAATGCCATTGCTCGAAGGATTGCCTCGTTCGTCGTTCAAATGGCGTGCAGAAATGACAATCTGACGTTCTACATCGTTTCGGAAATCGATTACATACAGATGTTTTGGTTGGACCAGAGTGCGACTGCGGAGGAGGAGGAGGAGGAGACGAAAATTTTTGACGACTTTTCGGGGAGGAGAGGGGCGCCGGAGACGGGGATAGAGAGGTTGAAGAAGGAGCAATTCGATGGGTTTGGGGGAGAAGATTTGGGGAATTGTAGTGTGTGTTATGATGAGATGAAGGACGGCGGGGAAGAAGTGAGCAGAATGCCCTTGGGACATGTGTATCATAAATCTTGTGTTCTCACTTGGCTTCAAAGGAACAACTCATGAACTCAGTGCAGAAAGAAACTAGAAGCTTAAGAGATTCAAAGTTTTTTTTTTCTTTTGTTAGGGTAATGTAATTTTTTTTGGACAAAAATTCAATTTATAGGTGTTTTATGATTTGCTTTTAAATGGATACCTTTAGGTATTTCTTTGAAATGTATGAGTTTATGATTTGCATGTTTTTGTTTCTACTTTAAAATGATGTCAATATGCATTTGGTAACAAATTCATGAGGATCTAGAACTTAAGAAAGTCGGGTGTGGATACAAAATGTGTTTCTAAAATTTATGAAAAGACTTTGGATGTATATCTTGAAAAAGATAAATGCCTTTAACAAAGCATAAAGGTCTGGAAATAAGATAACTGTTCCACGGAAAATAATATCCGAATTTCATATGAATAAATGGTATCTGAATCTACCATTTGATGTCTCCCTCTGTCGTTGGATTTTGAGGTGACCAACGATGAGCGGCGGTTTGGGGAACCTCTGAGTGACAGAACGTCGTCATTGCGAACCCCCAATTTGGCGCCGGTCTCAGTTCTGCCTATGTGTGCCGCGATGTTGCGGCCGCAGGGGAGGTTTTTGTATAGGCCGCCTAGGGCGGAGGAGAAGCTTGATTGGCCGAAGAAGTGA

mRNA sequence

ATGGAAAATGACAATCTGACGTTCTACATCGTTTCGGAAATCGATTACATACAGATGTTTTGGTTGGACCAGAGTGCGACTGCGGAGGAGGAGGAGGAGGAGACGAAAATTTTTGACGACTTTTCGGGGAGGAGAGGGGCGCCGGAGACGGGGATAGAGAGGTTGAAGAAGGAGCAATTCGATGGGTTTGGGGGAGAAGATTTGGGGAATTGTAGTGTGTGTTATGATGAGATGAAGGACGGCGGGGAAGAAGTGAGCAGAATGCCCTTGGGACATGTGACCAACGATGAGCGGCGGTTTGGGGAACCTCTGAGTGACAGAACGTCGTCATTGCGAACCCCCAATTTGGCGCCGGTCTCAGTTCTGCCTATGTGTGCCGCGATGTTGCGGCCGCAGGGGAGGTTTTTGTATAGGCCGCCTAGGGCGGAGGAGAAGCTTGATTGGCCGAAGAAGTGA

Coding sequence (CDS)

ATGGAAAATGACAATCTGACGTTCTACATCGTTTCGGAAATCGATTACATACAGATGTTTTGGTTGGACCAGAGTGCGACTGCGGAGGAGGAGGAGGAGGAGACGAAAATTTTTGACGACTTTTCGGGGAGGAGAGGGGCGCCGGAGACGGGGATAGAGAGGTTGAAGAAGGAGCAATTCGATGGGTTTGGGGGAGAAGATTTGGGGAATTGTAGTGTGTGTTATGATGAGATGAAGGACGGCGGGGAAGAAGTGAGCAGAATGCCCTTGGGACATGTGACCAACGATGAGCGGCGGTTTGGGGAACCTCTGAGTGACAGAACGTCGTCATTGCGAACCCCCAATTTGGCGCCGGTCTCAGTTCTGCCTATGTGTGCCGCGATGTTGCGGCCGCAGGGGAGGTTTTTGTATAGGCCGCCTAGGGCGGAGGAGAAGCTTGATTGGCCGAAGAAGTGA

Protein sequence

MENDNLTFYIVSEIDYIQMFWLDQSATAEEEEEETKIFDDFSGRRGAPETGIERLKKEQFDGFGGEDLGNCSVCYDEMKDGGEEVSRMPLGHVTNDERRFGEPLSDRTSSLRTPNLAPVSVLPMCAAMLRPQGRFLYRPPRAEEKLDWPKK
Homology
[Close]
BLAST of Cp4.1LG08g07770 vs. ExPASy Swiss-Prot
Match: Q8L733 (Putative transferase At4g12130, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g12130 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.0e-09
Identity = 34/71 (47.89%), Postives = 45/71 (63.38%), Query Frame = 0 

Query: 82  GEEVSRMPLGHVTNDERRFGEPLSDRTSSLRTPNLAPVSVLPMCAAMLRPQGR-----FL 141
           G +  +   G +TND RRFGE   ++ S++ TPN+A V+  PM AA+L PQGR     FL
Sbjct: 45  GPDTVKFLQGLLTNDVRRFGESSGEKNSAVPTPNMASVTNPPMYAALLTPQGRFLYDFFL 104

Query: 142 YRPPRAEEKLD 148
           Y P R +EKLD
Sbjct: 105 YSPSRPDEKLD 115

[Close]
BLAST of Cp4.1LG08g07770 vs. NCBI nr
Match: XP_023539472.1 (uncharacterized protein LOC111800119 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 187 bits (476), Expect = 2.86e-58
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0 

Query: 3   NDNLTFYIVSEIDYIQMFWLDQSATAEEEEEETKIFDDFSGRRGAPETGIERLKKEQFDG 62
           NDNLTFYIVSEIDYIQMFWLDQSATAEEEEEETKIFDDFSGRRGAPETGIERLKKEQFDG
Sbjct: 33  NDNLTFYIVSEIDYIQMFWLDQSATAEEEEEETKIFDDFSGRRGAPETGIERLKKEQFDG 92

Query: 63  FGGEDLGNCSVCYDEMKDGGEEVSRMPLGHV 93
           FGGEDLGNCSVCYDEMKDGGEEVSRMPLGHV
Sbjct: 93  FGGEDLGNCSVCYDEMKDGGEEVSRMPLGHV 123

[Close]
BLAST of Cp4.1LG08g07770 vs. NCBI nr
Match: XP_023521699.1 (E3 ubiquitin-protein ligase CIP8-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 182 bits (461), Expect = 3.61e-56
Identity = 89/91 (97.80%), Postives = 89/91 (97.80%), Query Frame = 0 

Query: 3   NDNLTFYIVSEIDYIQMFWLDQSATAEEEEEETKIFDDFSGRRGAPETGIERLKKEQFDG 62
           NDNLTFYIVSEIDYIQMFWLDQSATAEEEEEETKIFDDFSGRRGAPETGIERLKKEQFDG
Sbjct: 20  NDNLTFYIVSEIDYIQMFWLDQSATAEEEEEETKIFDDFSGRRGAPETGIERLKKEQFDG 79

Query: 63  FGGEDLGNCSVCYDEMKDGGEEVSRMPLGHV 93
           FGGEDLGN SVCYDEMKDGGEEVSRMP GHV
Sbjct: 80  FGGEDLGNYSVCYDEMKDGGEEVSRMPFGHV 110

[Close]
BLAST of Cp4.1LG08g07770 vs. NCBI nr
Match: XP_023539481.1 (uncharacterized protein LOC111800127 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 177 bits (448), Expect = 3.44e-54
Identity = 87/91 (95.60%), Postives = 87/91 (95.60%), Query Frame = 0 

Query: 3   NDNLTFYIVSEIDYIQMFWLDQSATAEEEEEETKIFDDFSGRRGAPETGIERLKKEQFDG 62
           NDNLTFYIVSEIDYIQMFWLDQSAT EEEEEETKIFDDFSGRRGAPETGIERLKKEQFDG
Sbjct: 20  NDNLTFYIVSEIDYIQMFWLDQSATEEEEEEETKIFDDFSGRRGAPETGIERLKKEQFDG 79

Query: 63  FGGEDLGNCSVCYDEMKDGGEEVSRMPLGHV 93
           FGGEDLGN SVCYDEMKDGGEEVSRMP  HV
Sbjct: 80  FGGEDLGNYSVCYDEMKDGGEEVSRMPFEHV 110

[Close]
BLAST of Cp4.1LG08g07770 vs. NCBI nr
Match: XP_023521698.1 (E3 ubiquitin-protein ligase RNF165-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 160 bits (404), Expect = 7.82e-47
Identity = 78/95 (82.11%), Postives = 85/95 (89.47%), Query Frame = 0 

Query: 3   NDNLTFYIVSEIDYIQMFWLDQSATA----EEEEEETKIFDDFSGRRGAPETGIERLKKE 62
           N  +TFYIV+EIDYIQMFW+D SAT     E+EEEET+IFDDFSGRRGAPET IERLKKE
Sbjct: 55  NYEMTFYIVAEIDYIQMFWMDDSATGAEDGEDEEEETEIFDDFSGRRGAPETAIERLKKE 114

Query: 63  QFDGFGGEDLGNCSVCYDEMKDGGEEVSRMPLGHV 93
           +FDGFGGEDLGNCSVCYDEMKDGGEEVSR+P GHV
Sbjct: 115 KFDGFGGEDLGNCSVCYDEMKDGGEEVSRIPCGHV 149

[Close]
BLAST of Cp4.1LG08g07770 vs. NCBI nr
Match: XP_023539480.1 (E3 ubiquitin-protein ligase RNF165-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 161 bits (408), Expect = 9.75e-47
Identity = 79/95 (83.16%), Postives = 86/95 (90.53%), Query Frame = 0 

Query: 3   NDNLTFYIVSEIDYIQMFWLDQSATA----EEEEEETKIFDDFSGRRGAPETGIERLKKE 62
           N  +TFYIV+EIDYIQMFW+D SATA    E+EEEET+IFDDFSGRRGAPET IERLKKE
Sbjct: 109 NYEMTFYIVAEIDYIQMFWMDDSATAAEEEEDEEEETEIFDDFSGRRGAPETAIERLKKE 168

Query: 63  QFDGFGGEDLGNCSVCYDEMKDGGEEVSRMPLGHV 93
           +FDGFGGEDLGNCSVCYDEMKDGGEEVSR+P GHV
Sbjct: 169 KFDGFGGEDLGNCSVCYDEMKDGGEEVSRIPCGHV 203

[Close]
BLAST of Cp4.1LG08g07770 vs. ExPASy TrEMBL
Match: A0A6J1HMR6 (putative transferase At4g12130, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111465039 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 6.25e-17
Identity = 46/71 (64.79%), Postives = 52/71 (73.24%), Query Frame = 0 

Query: 82  GEEVSRMPLGHVTNDERRFGEPLSDRTSSLRTPNLAPVSVLPMCAAMLRPQGRFLY---- 141
           G +  +   G +TND RRFGEP  ++TSSL TPNLAPVSV PM AAML PQGRFLY    
Sbjct: 54  GPDTVKFLHGLLTNDVRRFGEPPGEKTSSLPTPNLAPVSVTPMYAAMLTPQGRFLYDLFL 113

Query: 142 -RPPRAEEKLD 147
            RPPR+EEKLD
Sbjct: 114 YRPPRSEEKLD 124

[Close]
BLAST of Cp4.1LG08g07770 vs. ExPASy TrEMBL
Match: A0A6J1EBT8 (putative transferase At4g12130, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111431134 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 8.63e-17
Identity = 46/71 (64.79%), Postives = 52/71 (73.24%), Query Frame = 0 

Query: 82  GEEVSRMPLGHVTNDERRFGEPLSDRTSSLRTPNLAPVSVLPMCAAMLRPQGRFLY---- 141
           G +  +   G +TND RRFGEP  ++TSSL TPNLAPVSV PM AAML PQGRFLY    
Sbjct: 54  GPDTVKFLHGLLTNDVRRFGEPPGEKTSSLPTPNLAPVSVSPMYAAMLTPQGRFLYDLFL 113

Query: 142 -RPPRAEEKLD 147
            RPPR+EEKLD
Sbjct: 114 YRPPRSEEKLD 124

[Close]
BLAST of Cp4.1LG08g07770 vs. ExPASy TrEMBL
Match: A0A5D3D7G0 (Putative transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G001300 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 7.67e-16
Identity = 44/71 (61.97%), Postives = 52/71 (73.24%), Query Frame = 0 

Query: 82  GEEVSRMPLGHVTNDERRFGEPLSDRTSSLRTPNLAPVSVLPMCAAMLRPQGRFLY---- 141
           G +  +   G +TND RRFGEP SD+TSSL TPNLAPV+V PM AAML PQGRFLY    
Sbjct: 54  GPDTVKFLHGLLTNDVRRFGEPPSDKTSSLPTPNLAPVTVTPMYAAMLTPQGRFLYDLFL 113

Query: 142 -RPPRAEEKLD 147
            RPP+ +EKL+
Sbjct: 114 YRPPKPDEKLN 124

[Close]
BLAST of Cp4.1LG08g07770 vs. ExPASy TrEMBL
Match: A0A0A0L5P2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G036430 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 7.67e-16
Identity = 44/71 (61.97%), Postives = 52/71 (73.24%), Query Frame = 0 

Query: 82  GEEVSRMPLGHVTNDERRFGEPLSDRTSSLRTPNLAPVSVLPMCAAMLRPQGRFLY---- 141
           G +  +   G +TND RRFGEP SD+TSSL TPNLAPV+V PM AAML PQGRFLY    
Sbjct: 54  GPDTVKFLHGLLTNDVRRFGEPPSDKTSSLPTPNLAPVTVTPMYAAMLTPQGRFLYDLFL 113

Query: 142 -RPPRAEEKLD 147
            RPP+ +EKL+
Sbjct: 114 YRPPKPDEKLN 124

[Close]
BLAST of Cp4.1LG08g07770 vs. ExPASy TrEMBL
Match: A0A1S3BKT7 (putative transferase At4g12130, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490934 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 7.67e-16
Identity = 44/71 (61.97%), Postives = 52/71 (73.24%), Query Frame = 0 

Query: 82  GEEVSRMPLGHVTNDERRFGEPLSDRTSSLRTPNLAPVSVLPMCAAMLRPQGRFLY---- 141
           G +  +   G +TND RRFGEP SD+TSSL TPNLAPV+V PM AAML PQGRFLY    
Sbjct: 54  GPDTVKFLHGLLTNDVRRFGEPPSDKTSSLPTPNLAPVTVTPMYAAMLTPQGRFLYDLFL 113

Query: 142 -RPPRAEEKLD 147
            RPP+ +EKL+
Sbjct: 114 YRPPKPDEKLN 124

[Close]
BLAST of Cp4.1LG08g07770 vs. TAIR 10
Match: AT4G12130.1 (Glycine cleavage T-protein family )

HSP 1 Score: 63.2 bits (152), Expect = 2.1e-10
Identity = 34/71 (47.89%), Postives = 45/71 (63.38%), Query Frame = 0 

Query: 82  GEEVSRMPLGHVTNDERRFGEPLSDRTSSLRTPNLAPVSVLPMCAAMLRPQGR-----FL 141
           G +  +   G +TND RRFGE   ++ S++ TPN+A V+  PM AA+L PQGR     FL
Sbjct: 45  GPDTVKFLQGLLTNDVRRFGESSGEKNSAVPTPNMASVTNPPMYAALLTPQGRFLYDFFL 104

Query: 142 YRPPRAEEKLD 148
           Y P R +EKLD
Sbjct: 105 YSPSRPDEKLD 115

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g07770 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8L7333.0e-0947.89Putative transferase At4g12130, mitochondrial OS=Arabidopsis thaliana OX=3702 GN... [more]
BLAST of Cp4.1LG08g07770 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023539472.12.86e-58100.00uncharacterized protein LOC111800119 [Cucurbita pepo subsp. pepo][more]
XP_023521699.13.61e-5697.80E3 ubiquitin-protein ligase CIP8-like [Cucurbita pepo subsp. pepo][more]
XP_023539481.13.44e-5495.60uncharacterized protein LOC111800127 [Cucurbita pepo subsp. pepo][more]
XP_023521698.17.82e-4782.11E3 ubiquitin-protein ligase RNF165-like [Cucurbita pepo subsp. pepo][more]
XP_023539480.19.75e-4783.16E3 ubiquitin-protein ligase RNF165-like [Cucurbita pepo subsp. pepo][more]
BLAST of Cp4.1LG08g07770 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HMR66.25e-1764.79putative transferase At4g12130, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1EBT88.63e-1764.79putative transferase At4g12130, mitochondrial OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A5D3D7G07.67e-1661.97Putative transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443... [more]
A0A0A0L5P27.67e-1661.97Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G036430 PE=4 SV=1[more]
A0A1S3BKT77.67e-1661.97putative transferase At4g12130, mitochondrial OS=Cucumis melo OX=3656 GN=LOC1034... [more]
BLAST of Cp4.1LG08g07770 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G12130.12.1e-1047.89Glycine cleavage T-protein family [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..113
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..105
NoneNo IPR availableCDDcd16448RING-H2coord: 71..93
e-value: 0.00996626
score: 30.4979

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g07770.1Cp4.1LG08g07770.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016226 iron-sulfur cluster assembly
cellular_component GO:0005759 mitochondrial matrix