Cp4.1LG08g07390 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTGTCTGCTTCCTCCGCCGCTAAGCTCTTCAGTCCTGTTCGTTCCGCCTCTGTCCTTCCTTCTGTCGGTCGTTTTTTCAACACTAATGCTCAGATTGCTAGTTACGACGACGAAGACCGCTCCGTCGATTTGGACAGCCGCCGGAGCGGTTTGTTAGACGAACACGACTCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTTGCTTTGGGTTTCCCCAAAAGGCCTCATACCAATGGAGTTAGTATTCCTCACTTATAAACCCATGATCATTCCCTAAATTAGCCGATGTGGGACTCCCATCATCCAACACGGTTCTCTCTCTCGTTATCGTGATCGCTTCCCTGGTTTCGCAGGTAGTTGTTTTCTTCGTTCCTTTGATTTATTGATTGATTGTTCTGGAATTTTGAACTAGGTTGCCATGTGATTAGTTGTTTCTTTCTTTGTAATTTTGTTTTGATTTGTTGAAATGGATCTGCGCAACGACTGGTGGTATTGAATGTTGAATTTATATGACGCGCATTATTGAATCGCCCTGATCGGTTTTGTTAGCCAGAGATTTTGTTTGCTTGTCTAGTTTTGATCAGAGATTTTGTTTGCTTGTCTAGTTTTGATCATGCTGACAAATCACGGCATGGAATCATCTGAGAGTGGTTACTGTTGTTCTTTTAGTGGAAACTTTGCTTGTTTGCTAGTGTTGGATATCGCTGTTGTTGCCATTTAATCATCGGAAGTTGTGTTTCAACAAGAACTCCTACTCGCTTATTGATTGAGAAATATCCGCATAAAACCATGTGAAATTAGTCGTGTTTGAACGAGAAAGTCCATTCGTTGCACTCCAATTCTTGTTTGCTTGTTCCGCACGAATCTTTATCTGTTCACACATTTGGACAATATTGTCAATAAACTTTAAGTTCGTAAGATTGCTGATGGTGGATCGATCACTACCTGAATACACTTCAATTTCCATGTGACAGATGTGTTCGATCATTTTTCGCCGAACCGGAGCCTGAGTCAGGTCATGAATCTGATGGACCAGTTCATGGAGGATCCAATTCTGGCAGCTTCACGAGGAGTTGGAGCAGGATCAAGGAGGGGCTGGGACGTAAGAGAAGACGACGACGCTCTGTACTTGCGAATGGACATGCCTGGACTGAGCAAAGAAGATGTGAAGGTGAGCGTAGAGCAGAACACTCTGATAATCAAAGGCGAAGCTGCAAAGGAATCCGAAGACGAGGCAGACCGGCGACGATTCTCAAGCCGACTGGATTTGCCCGACAACCTCTACCAGCTGGATTCGATCAAAGCAGAAATGAAAAATGGTGTTCTGAAATTGAGCGTGCCGAAGGTGAAGGAAGAAGAGAGGAAGGCTGTGAAGCATGTTACAGTTGAGTAGTTTGGTCTAAAACTTGAAGAAAAAGCTCTGTAGCTTTTAGAGTTGAATATGGAGTTCTCATCGCCTTTTGCTGTGGTCTCTGTTTCATGGATGTTTGCGAACATTGTCGAGCTGTTTTGAAAATTCCCATGTAGCTGATTTCAACGGAGTTTCCCCCCTCATTTGTTGATGGAATCTAAGATATAAGCCGCTTTACATAGTCAAAGTTTCCATCATGTTGGTGCCTCTTCTCTTCTGCGTTCTTCATCCCATCATGTGAGTCTACATTTACTTTTGTGAACTTAATTCATTAATCCATCAGCACTCTCACTTATATTCGAGATCTATAGGGTTTGGTGCGGTTCTGTTGCCTTATCGATCACTTTCGTTCGAGTTAACTTATGAGTTAGGGCCTGAGTTTTTGAAGTACTGACCTATGAATGAATCTTCACAAGTTCCTTCAAGAAATTCAGAAGAGATTCGGGCGGGATCGGATTAACAATGGTACATCATAAGTATCTTTGTCTACTTTTAAGCATAGTTGATTCTGACAAGAACTTACAAAAAGATTATTTATCCAAAGCAGGATTGGAGTTCTACAACATTAGTGAAGGACTTTAGTTATGAGTTATGAGTTATGAACAAGTAAAAATGTAAATAATTAGGAAAAAAAATTAGAAAACTCACAGGAAATCTAGAAATTCCATTAAATAGGGACACGTGTGGAATGGTAGGGGACACGTTTGCCCTAGGTGGTTGATACGTGTCGAATGCCGAAGTGTAAAAGTGTGTTCGACTTAAAGCGATCAATCAAATCGGTGATCGATTTGCGATCTGCGATCTTTTTCCATGTGAGACGCGCATGTGAAAATGCATGTAAGAGCTTACTTGTGCATATGTATGGTGTGTGACTTGCATGTGAGTGGTCTTTTCTTTGCCGTTTGACTTTTGTTTGCTTATCTTGTTTTTCATTTCGATTTTAATGTTGACCTTACTTCTTGATTTAGAACTTACTAGTGAATTTTGAAGCCTTCAATAGTGAGAAAGCAAGTTTAAAAAGGTACGCTTTATCTCGGTGTTAGTATGGTTAGAATATGCACGATTAGGATTTTAGAAGGGCAAATCCAACGAGATGCTAATAGAAAAAATGACTGGATGCTTCTAGGATGAGAATTCAAAGTTATATGACTATTTTTAATGCTTTCCTAGAATGAAGGATAGAATATTCTAACTAATGCTATAGATGATTGAGAGGCATGTTTTCTCTACATTAAACTTGCTTGAATATATGATTTATGGTTTTCAAGCTTTACATGCTTGATAGGATTATCTTAAACATGTATGAATGAATAGATTAAATTTTATGTGCAATATGAGTATCTCCCTAACAAAGTACGCAAGAGCGAAACAAGCTAAGATTAGGGTGCAAGAGCTTAAACTGTACCTAGGTTAGAACGTTTCTAGTAGACTAAGCAACCTAGAATCTTGAGCACAATTAGAGTTCTAGACGTGAGTGCACCCAAAGACTGGATTAGCCCTGAGGAGTTAACCTCGAGCAACCTATAAATGTGAGATGCATTTAGATGCCTCTAAAAACCTAAACTTCGATGGCATCCAAGTTTGATTAAGAAAGGTAGCCACTCGAGTTATTATTGCTTGTAGGGTCGAGACAAGGCTGATGTTGTAATCTCGTTAAATTGGACTTGGAAGAGACTAGGGACTATACAGACGACTAGCTCAAAACGAGGATTTTTACTAAGTGTAAAAACAAGGTTGATGTCGGGACTCTGTAAATCAATTTTGAAATATACTAGGACTACATAAGTCGATAACTTAGGATAAGTACTTCTATTGAGTGTAGAAACAGGCCAAGGCTGAGTAAATAGGTTTCAGAGAGAGAATTGGGAGTACATGGGTAGTTGTCAATGTGAGTACTTCTATTGAGCGTAGGGACGGATCAAGACTAACGTCGTGATGCCGTAAATCGTTCTAAAGGAAGACTAGGGACTACACAGATAGAAAATTCATGATGGTTGCCCTTAATATAGGTGGTAACGACCCGAGGCCCCGATAAGATGGAACCGTTTAGAACTTTGAGGCTTTCTCAGAAGTTTGAACCGCTGAACTAGGCCTAAACTTTTTAGAGCCTAGAGAAAATCTTGTGATAGCTAGAGAAAATCTTGTGATAGCTAGCTTATAAGGTTGCAGGGAAGTTGCTTATGGAATATTTTTATACTCACCATTTTTCCTTGTTTTTCTTTGGAGATTAGGTTACCAATTGAAGCGGAGGAGTGTTTAGGAGTTGTATCGTCACAGAGGGACATCACCCGAGGCATCAGTTGTCATTTGTATCATTTAATTTCTACTTTTATTTATTTATATCTTGTTTGAAATAAATCCATAGGACAGAAGTTTTGAACTTTTTGAAATAAGCCAAGAGTTTGTGCTCACAAATGGTGAGGCCCAGCGGACCACAAACCCACCCAACAAAAAATAAATGGTTCCCATTTCTCTCCACCCTCTTCTAAATTTCATCCTCTTCATCTCTTCCTCTTTTCATCTCTAACTCTTATTTCAAATCTGACCATCACTTTCATTCCTTTTTTTCATTGGATTCTTCCCTCTTCCACTTTTTTTTTATCTTATTTTTATTAACGTTCAACTATGATGTTTTTGTTCGGCATTTTAACACGTTATCCACTATTTTTTATATGGCTAATTTTCATAGGGTGCTTTAGAGCGTCGCTATACAATTACAACTCGTCTTTGCTCAATGATACACAACACTCATGCTTTAGCACCTAGTACAACTACCATCCGTGCAACAACAGGTAGTGGGCAACAAAGTTTCTTTGCTGCCCATTTCGATTTTTCAATATATCATATTCATGCAGTGAAAGATGTTGCCTTATTTTTCTCGTAGCTCGTGTTTGACACCAATTAAAGCTGATCTTAGTTTTTGATGGACCCGGGGGTACATGGTAGCATACGTCTACAATGCCATTGACACTTTCGACCGACATTCAAGCCTCCTCTCGCAATGTCAAATGACCAAGTCTTCAAGGTGCACGTTCCTTCCCCCAAGAAACTCAATCATAAATGGTTCATGAAAATTGAAGAAACTTTAAGGAAGCATGATTGTAATATTATTGTAAGGAAGAAAATGTGATCAAGTTTTGTCACAGTCCAACATGGCATGTTCCCTTCAATAATAAAG CTGTCTGCTTCCTCCGCCGCTAAGCTCTTCAGTCCTGTTCGTTCCGCCTCTGTCCTTCCTTCTGTCGGTCGTTTTTTCAACACTAATGCTCAGATTGCTAATGTGTTCGATCATTTTTCGCCGAACCGGAGCCTGAGTCAGGTCATGAATCTGATGGACCAGTTCATGGAGGATCCAATTCTGGCAGCTTCACGAGGAGTTGGAGCAGGATCAAGGAGGGGCTGGGACGTAAGAGAAGACGACGACGCTCTGTACTTGCGAATGGACATGCCTGGACTGAGCAAAGAAGATGTGAAGGTGAGCGTAGAGCAGAACACTCTGATAATCAAAGGCGAAGCTGCAAAGGAATCCGAAGACGAGGCAGACCGGCGACGATTCTCAAGCCGACTGGATTTGCCCGACAACCTCTACCAGCTGGATTCGATCAAAGCAGAAATGAAAAATGGTGTTCTGAAATTGAGCGTGCCGAAGGTGAAGGAAGAAGAGAGGAAGGCTGTGAAGCATGTTACAGTTGAGTAGTTTGGTCTAAAACTTGAAGAAAAAGCTCTGTAGCTTTTAGAGTTGAATATGGAGTTCTCATCGCCTTTTGCTGTGGTCTCTGTTTCATGGATGTTTGCGAACATTGTCGAGCTGTTTTGAAAATTCCCATGTAGCTGATTTCAACGGAGTTTCCCCCCTCATTTGTTGATGGAATCTAAGATATAAGCCGCTTTACATAGTCAAAGTTTCCATCATGTTGGTGCCTCTTCTCTTCTGCGTTCTTCATCCCATCATGTTACCAATTGAAGCGGAGGAGTGTTTAGGAGTTGTATCGTCACAGAGGGACATCACCCGAGGCATCAGTTGTCATTTGTATCATTTAATTTCTACTTTTATTTATTTATATCTTGTTTGAAATAAATCCATAGGACAGAAGTTTTGAACTTTTTGAAATAAGCCAAGAGTTTGTGCTCACAAATGGTGAGGCCCAGCGGACCACAAACCCACCCAACAAAAAATAAATGGTTCCCATTTCTCTCCACCCTCTTCTAAATTTCATCCTCTTCATCTCTTCCTCTTTTCATCTCTAACTCTTATTTCAAATCTGACCATCACTTTCATTCCTTTTTTTCATTGGATTCTTCCCTCTTCCACTTTTTTTTTATCTTATTTTTATTAACGTTCAACTATGATGTTTTTGTTCGGCATTTTAACACGTTATCCACTATTTTTTATATGGCTAATTTTCATAGGGTGCTTTAGAGCGTCGCTATACAATTACAACTCGTCTTTGCTCAATGATACACAACACTCATGCTTTAGCACCTAGTACAACTACCATCCGTGCAACAACAGCTCGTGTTTGACACCAATTAAAGCTGATCTTAGTTTTTGATGGACCCGGGGGTACATGGTAGCATACGTCTACAATGCCATTGACACTTTCGACCGACATTCAAGCCTCCTCTCGCAATGTCAAATGACCAAGTCTTCAAGGTGCACGTTCCTTCCCCCAAGAAACTCAATCATAAATGGTTCATGAAAATTGAAGAAACTTTAAGGAAGCATGATTGTAATATTATTGTAAGGAAGAAAATGTGATCAAGTTTTGTCACAGTCCAACATGGCATGTTCCCTTCAATAATAAAG CTGTCTGCTTCCTCCGCCGCTAAGCTCTTCAGTCCTGTTCGTTCCGCCTCTGTCCTTCCTTCTGTCGGTCGTTTTTTCAACACTAATGCTCAGATTGCTAATGTGTTCGATCATTTTTCGCCGAACCGGAGCCTGAGTCAGGTCATGAATCTGATGGACCAGTTCATGGAGGATCCAATTCTGGCAGCTTCACGAGGAGTTGGAGCAGGATCAAGGAGGGGCTGGGACGTAAGAGAAGACGACGACGCTCTGTACTTGCGAATGGACATGCCTGGACTGAGCAAAGAAGATGTGAAGGTGAGCGTAGAGCAGAACACTCTGATAATCAAAGGCGAAGCTGCAAAGGAATCCGAAGACGAGGCAGACCGGCGACGATTCTCAAGCCGACTGGATTTGCCCGACAACCTCTACCAGCTGGATTCGATCAAAGCAGAAATGAAAAATGGTGTTCTGAAATTGAGCGTGCCGAAGGTGAAGGAAGAAGAGAGGAAGGCTGTGAAGCATGTTACAGTTGAGTAG LSASSAAKLFSPVRSASVLPSVGRFFNTNAQIANVFDHFSPNRSLSQVMNLMDQFMEDPILAASRGVGAGSRRGWDVREDDDALYLRMDMPGLSKEDVKVSVEQNTLIIKGEAAKESEDEADRRRFSSRLDLPDNLYQLDSIKAEMKNGVLKLSVPKVKEEERKAVKHVTVE Homology
BLAST of Cp4.1LG08g07390 vs. ExPASy Swiss-Prot
Match: P11890 (Small heat shock protein, chloroplastic OS=Oxybasis rubra OX=3560 GN=HSP23 PE=2 SV=1) HSP 1 Score: 188.0 bits (476), Expect = 9.2e-47 Identity = 102/181 (56.35%), Postives = 126/181 (69.61%), Query Frame = 0
BLAST of Cp4.1LG08g07390 vs. ExPASy Swiss-Prot
Match: Q96331 (23.6 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=HSP23.6 PE=2 SV=1) HSP 1 Score: 183.0 bits (463), Expect = 2.9e-45 Identity = 88/144 (61.11%), Postives = 121/144 (84.03%), Query Frame = 0
BLAST of Cp4.1LG08g07390 vs. ExPASy Swiss-Prot
Match: P46254 (Heat shock 22 kDa protein, mitochondrial OS=Pisum sativum OX=3888 GN=HSP22 PE=2 SV=1) HSP 1 Score: 170.2 bits (430), Expect = 2.0e-41 Identity = 91/143 (63.64%), Postives = 116/143 (81.12%), Query Frame = 0
BLAST of Cp4.1LG08g07390 vs. ExPASy Swiss-Prot
Match: Q9FGM9 (23.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=HSP23.5 PE=1 SV=1) HSP 1 Score: 168.7 bits (426), Expect = 5.8e-41 Identity = 92/199 (46.23%), Postives = 134/199 (67.34%), Query Frame = 0
BLAST of Cp4.1LG08g07390 vs. ExPASy Swiss-Prot
Match: Q39818 (Heat shock 22 kDa protein, mitochondrial OS=Glycine max OX=3847 GN=HSP23.9 PE=2 SV=1) HSP 1 Score: 144.8 bits (364), Expect = 8.9e-34 Identity = 72/102 (70.59%), Postives = 87/102 (85.29%), Query Frame = 0
BLAST of Cp4.1LG08g07390 vs. NCBI nr
Match: XP_023538938.1 (small heat shock protein, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023538939.1 small heat shock protein, chloroplastic-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 307 bits (787), Expect = 3.32e-104 Identity = 171/202 (84.65%), Postives = 172/202 (85.15%), Query Frame = 0
BLAST of Cp4.1LG08g07390 vs. NCBI nr
Match: XP_023005545.1 (small heat shock protein, chloroplastic-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 288 bits (738), Expect = 9.98e-97 Identity = 162/203 (79.80%), Postives = 166/203 (81.77%), Query Frame = 0
BLAST of Cp4.1LG08g07390 vs. NCBI nr
Match: XP_023005547.1 (small heat shock protein, chloroplastic-like isoform X2 [Cucurbita maxima]) HSP 1 Score: 287 bits (734), Expect = 3.92e-96 Identity = 161/202 (79.70%), Postives = 166/202 (82.18%), Query Frame = 0
BLAST of Cp4.1LG08g07390 vs. NCBI nr
Match: KAG7028385.1 (Small heat shock protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 286 bits (733), Expect = 5.57e-96 Identity = 161/202 (79.70%), Postives = 165/202 (81.68%), Query Frame = 0
BLAST of Cp4.1LG08g07390 vs. NCBI nr
Match: KAG6596857.1 (Small heat shock protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 286 bits (733), Expect = 5.57e-96 Identity = 161/202 (79.70%), Postives = 165/202 (81.68%), Query Frame = 0
BLAST of Cp4.1LG08g07390 vs. ExPASy TrEMBL
Match: A0A6J1KXP6 (small heat shock protein, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498501 PE=3 SV=1) HSP 1 Score: 288 bits (738), Expect = 4.83e-97 Identity = 162/203 (79.80%), Postives = 166/203 (81.77%), Query Frame = 0
BLAST of Cp4.1LG08g07390 vs. ExPASy TrEMBL
Match: A0A6J1KTF5 (small heat shock protein, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111498501 PE=3 SV=1) HSP 1 Score: 287 bits (734), Expect = 1.90e-96 Identity = 161/202 (79.70%), Postives = 166/202 (82.18%), Query Frame = 0
BLAST of Cp4.1LG08g07390 vs. ExPASy TrEMBL
Match: A0A6J1FFI7 (small heat shock protein, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443511 PE=3 SV=1) HSP 1 Score: 284 bits (726), Expect = 3.14e-95 Identity = 161/202 (79.70%), Postives = 166/202 (82.18%), Query Frame = 0
BLAST of Cp4.1LG08g07390 vs. ExPASy TrEMBL
Match: A0A6J1FF79 (small heat shock protein, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443511 PE=3 SV=1) HSP 1 Score: 283 bits (725), Expect = 4.61e-95 Identity = 161/203 (79.31%), Postives = 166/203 (81.77%), Query Frame = 0
BLAST of Cp4.1LG08g07390 vs. ExPASy TrEMBL
Match: A0A6J1E9W1 (small heat shock protein, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111431197 PE=3 SV=1) HSP 1 Score: 278 bits (712), Expect = 4.25e-93 Identity = 155/202 (76.73%), Postives = 165/202 (81.68%), Query Frame = 0
BLAST of Cp4.1LG08g07390 vs. TAIR 10
Match: AT4G25200.1 (mitochondrion-localized small heat shock protein 23.6 ) HSP 1 Score: 183.0 bits (463), Expect = 2.1e-46 Identity = 88/144 (61.11%), Postives = 121/144 (84.03%), Query Frame = 0
BLAST of Cp4.1LG08g07390 vs. TAIR 10
Match: AT5G51440.1 (HSP20-like chaperones superfamily protein ) HSP 1 Score: 168.7 bits (426), Expect = 4.1e-42 Identity = 92/199 (46.23%), Postives = 134/199 (67.34%), Query Frame = 0
BLAST of Cp4.1LG08g07390 vs. TAIR 10
Match: AT4G27670.1 (heat shock protein 21 ) HSP 1 Score: 112.1 bits (279), Expect = 4.5e-25 Identity = 63/138 (45.65%), Postives = 91/138 (65.94%), Query Frame = 0
BLAST of Cp4.1LG08g07390 vs. TAIR 10
Match: AT1G59860.1 (HSP20-like chaperones superfamily protein ) HSP 1 Score: 75.9 bits (185), Expect = 3.6e-14 Identity = 57/166 (34.34%), Postives = 94/166 (56.63%), Query Frame = 0
BLAST of Cp4.1LG08g07390 vs. TAIR 10
Match: AT2G29500.1 (HSP20-like chaperones superfamily protein ) HSP 1 Score: 75.5 bits (184), Expect = 4.7e-14 Identity = 58/164 (35.37%), Postives = 92/164 (56.10%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|