Cp4.1LG06g06430 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG06g06430
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG06: 3897930 .. 3900345 (-)
RNA-Seq Expression	Cp4.1LG06g06430
Synteny	Cp4.1LG06g06430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGTTAAAATGCGGTTTTGGGTGTTGAGAAATTATTGAGAAAATACAGATAGACAAGAAAAAACAATCTGTTTCCTTTTCCCCGTCGATTTCTTCAAATTTTCGTCTTCAAGCTGCGCTTTTGATCATCGTTCTTCCTCCGATTCTCTCTTTCACCGCAATTTGTCTCGTAGAAACTTCAATTTTTGTTCTTAGGTCACAGCTTTTGTTGTTGGTTTCTATGCTCGCTCAGATTATGTCGGAACTTGATCGCTACTGCCAAGATTTAATCATTTTTTTGTAGCAACTGTGATTCGCCATTTACGGCTTCGATATCTCTGTCAACCGTTGCAGGCAGCATCGAAGTCGGCGTCGTATTCTGAAGCAGAAGAATGAGACAGTCGCCGGTCTTCGAAGACGATCACGTCGAAGGAACTCACGTTCGGGCCTTTTCGTCGCCTTCGCTCTGCCCTTCTTCTTCTCGCAGAGATGTTTATTACAGGTTCAATCTAATCTCTGGCTTATATCTTACTGTGCAGTCAATTTATTGCTCTACTTTATGCTGTAGGAGCCTCTGAATTTCTTTTTGTTTTCTTTTTTCTCATGTTCTGATCGAAGAATTGGGTTGATTTGCCTGATTAAGGGATGGTTTGGCGATTATTTCTTGGTTTGTAGCGTTAATTGAATCGATTTCGAACTGATTAGTATTCCTAAAATCGTGATTGCCTTTTGAGAACGATCTGATCCGGCTTTTGGTGAAAGATTGTTTGGGTTGGGTTACATTGGACAGTAGTCGAGGGGAATTCAGCAGATTTTAGGGCAAATACATAAACAAGATTTTTCTACGCTTACAATGGAATTGGAGAATTGTCAAGAACTGTAATAGAGCAGAACTGTAGGGCACCGACTGGTCTGACCTATTAAGAATTTATTTAAACCAACTGTTGGGGAACACATAATGAACTCTGCCATGTGACATCTTTGCTGTATATATGGCATTCCCTTCTTTTTCATATTTGAAATTCTTCCCTCTGCTTTCTGTGGTAGCCCTGTAGTTTTTCCACATTTCATGAAGAAAAAGAGAAGAACAACTACCCAAAAGTTCTTATACGAAAGAGCTTAACTGATAGGACCCTTTTGTAGATAGACGTTGGACCGGTGAGTAGGGTCTAAGACCGTCTCGACGATGTCGAACATAAAATCTACTGTCAGCTGATCTTTCTAGTGGAGAGGATTTTTTTTCCTCAGACAATTAAACATAAATGCAGCAGTAGCAAACATATATTTGATCCCAGACTCTTGAGGGATGTGAGATGTTCTTGGAAGATGAGAAAGAGAAGAGTCGTATACTTTCATGGAGGAAAATGCTAATTTAACTCTCCTATAACTCCTTGAAAAGGCCTGAGATTGATCCAGACAACAAATCAAGAGGTCATGAACTTGCCTCATATTATGACACCTTGTAGAAACCTCTTAGTTAAATTGACCCCTTAGAACATAAAGATCGAGAAAAGGCTTGGAACCGATAACTCCTTTGCAGCTGTTGAGTTCAGAGCATTATGGCTACCCATGGAATTGGAAACCTTGACATGTGACGATGGGGATTCGAGTAGCTTTGTGTTGGGTGAGAATCGAAAACGCTTTATTATTTTCTAATTTTGTTTGAAATGGTAGGTAATGACAATTATACATCTGTGAGTCATTGTCAAATATATATATACATATATATATATATACCCAAGATCAGTTTTGTTAAGCACGAGTATTAATAGGGCCAACAATGATATGCCTCAGAGTTGGGAATCCTCCAATTCCTTAGTTTCTTAGTTTCTGGTGAACTTGTAATGACAATGGTTTATTTCATACAGCTGTGGTGCTTGTGGATATGAACTGAACTTGAGCTCTTCTAACCGCAATATATCGACCATTGGCTCTAAATATGGAAAATCAATAAAGCGAGGGATCATATCGTTTCTAAACATCGACGAGAGCAGATTTACACAGGTTGATCAACTTCAATGTGTGCCTCATTTCTCGAAGCACTCTTGGGGTCTGTTTCAACGTAGAATCAAACTACTGTGTCGAAAATGTGGAAACCATATTGGAAATGCATACACTAGCCATACTTCCTCCTCCCCACTTGTTTCAGATGGATCAGATTCATCTTTGCCTAATGAAGTCTCTAGGTGCATGAAATATGAAGTGAAAATTCGTGCGTTACAACCCTCGTCCTCCCACGAAACCAGTCTCCCAGTTATTTAAACAAGGACAAGGACAAGGACAAAGATTTATGAATTGGTCAAGAGTTACTAGCAGAAACAAATGCAGGATTCTCGATATGTGCTGTTTTACTTGTGAATAGAAGAATCGGGTCTGAAATGGAAGAAGCCAAGCGTGAAGGAAAAGGATTCACAGTTTATATTGTTCCTGCAAACTGA

mRNA sequence

CCGTTAAAATGCGGTTTTGGGTGTTGAGAAATTATTGAGAAAATACAGATAGACAAGAAAAAACAATCTGTTTCCTTTTCCCCGTCGATTTCTTCAAATTTTCGTCTTCAAGCTGCGCTTTTGATCATCGTTCTTCCTCCGATTCTCTCTTTCACCGCAATTTGTCTCGTAGAAACTTCAATTTTTGTTCTTAGGTCACAGCTTTTGTTGTTGGTTTCTATGCTCGCTCAGATTATGTCGGAACTTGATCGCTACTGCCAAGATTTAATCATTTTTTTGTAGCAACTGTGATTCGCCATTTACGGCTTCGATATCTCTGTCAACCGTTGCAGGCAGCATCGAAGTCGGCGTCGTATTCTGAAGCAGAAGAATGAGACAGTCGCCGGTCTTCGAAGACGATCACGTCGAAGGAACTCACGTTCGGGCCTTTTCGTCGCCTTCGCTCTGCCCTTCTTCTTCTCGCAGAGATGTTTATTACAGAATCAAACTACTGTGTCGAAAATGTGGAAACCATATTGGAAATGCATACACTAGCCATACTTCCTCCTCCCCACTTGTTTCAGATGGATCAGATTCATCTTTGCCTAATGAAGTCTCTAGAAGAATCGGGTCTGAAATGGAAGAAGCCAAGCGTGAAGGAAAAGGATTCACAGTTTATATTGTTCCTGCAAACTGA

Coding sequence (CDS)

ATGAGACAGTCGCCGGTCTTCGAAGACGATCACGTCGAAGGAACTCACGTTCGGGCCTTTTCGTCGCCTTCGCTCTGCCCTTCTTCTTCTCGCAGAGATGTTTATTACAGAATCAAACTACTGTGTCGAAAATGTGGAAACCATATTGGAAATGCATACACTAGCCATACTTCCTCCTCCCCACTTGTTTCAGATGGATCAGATTCATCTTTGCCTAATGAAGTCTCTAGAAGAATCGGGTCTGAAATGGAAGAAGCCAAGCGTGAAGGAAAAGGATTCACAGTTTATATTGTTCCTGCAAACTGA

Protein sequence

MRQSPVFEDDHVEGTHVRAFSSPSLCPSSSRRDVYYRIKLLCRKCGNHIGNAYTSHTSSSPLVSDGSDSSLPNEVSRRIGSEMEEAKREGKGFTVYIVPAN

Homology

[Close]

BLAST of Cp4.1LG06g06430 vs. NCBI nr
Match: XP_022937411.1 (uncharacterized protein At4g08330, chloroplastic-like [Cucurbita moschata] >KAG6591891.1 putative protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024763.1 putative protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 130 bits (328), Expect = 3.10e-36
Identity = 78/150 (52.00%), Postives = 81/150 (54.00%), Query Frame = 0


Query: 1   MRQSPVFEDDHVEGTHVRAFSSPSLCPSSSRRDVYY------------------------ 60
           MRQSPVFEDDHVEGTHVRAFSSPSLCPSSSRRDVYY                        
Sbjct: 1   MRQSPVFEDDHVEGTHVRAFSSPSLCPSSSRRDVYYSCGACGYELNLSSSNRNISTIGSK 60

Query: 61  ------------------------------------------RIKLLCRKCGNHIGNAYT 84
                                                     RIKLLCRKCGNHIGNAYT
Sbjct: 61  YGKSIKRGIISFLNIDESRFTQVDQLQCVPHFSKHSWGLFQRRIKLLCRKCGNHIGNAYT 120

[Close]

BLAST of Cp4.1LG06g06430 vs. NCBI nr
Match: XP_023534843.1 (uncharacterized protein At4g08330, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 130 bits (328), Expect = 3.10e-36
Identity = 78/150 (52.00%), Postives = 81/150 (54.00%), Query Frame = 0


Query: 1   MRQSPVFEDDHVEGTHVRAFSSPSLCPSSSRRDVYY------------------------ 60
           MRQSPVFEDDHVEGTHVRAFSSPSLCPSSSRRDVYY                        
Sbjct: 1   MRQSPVFEDDHVEGTHVRAFSSPSLCPSSSRRDVYYSCGACGYELNLSSSNRNISTIGSK 60

Query: 61  ------------------------------------------RIKLLCRKCGNHIGNAYT 84
                                                     RIKLLCRKCGNHIGNAYT
Sbjct: 61  YGKSIKRGIISFLNIDESRFTQVDQLQCVPHFSKHSWGLFQRRIKLLCRKCGNHIGNAYT 120

[Close]

BLAST of Cp4.1LG06g06430 vs. NCBI nr
Match: XP_022976871.1 (uncharacterized protein At4g08330, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 128 bits (321), Expect = 3.57e-35
Identity = 77/150 (51.33%), Postives = 80/150 (53.33%), Query Frame = 0


Query: 1   MRQSPVFEDDHVEGTHVRAFSSPSLCPSSSRRDVYY------------------------ 60
           MRQSPVF DDHVEGTHVRAFSSPSLCPSSSRRDVYY                        
Sbjct: 1   MRQSPVFGDDHVEGTHVRAFSSPSLCPSSSRRDVYYSCGACGYELNLSSSNRNISTIGSK 60

Query: 61  ------------------------------------------RIKLLCRKCGNHIGNAYT 84
                                                     RIKLLCRKCGNHIGNAYT
Sbjct: 61  YGKSIKRGIISFLNIDESRFTQVDQLQCVPHFSKHSWGLFQRRIKLLCRKCGNHIGNAYT 120

[Close]

BLAST of Cp4.1LG06g06430 vs. NCBI nr
Match: XP_038896624.1 (uncharacterized protein At4g08330, chloroplastic [Benincasa hispida])

HSP 1 Score: 100 bits (248), Expect = 3.97e-24
Identity = 65/150 (43.33%), Postives = 74/150 (49.33%), Query Frame = 0


Query: 1   MRQSPVFEDDHVEGTHVRAFSSPSLCPSSSRRDVYY------------------------ 60
           MRQSPVF DD+  GTH+++ SS SL PSSSRRDVYY                        
Sbjct: 1   MRQSPVFGDDYGHGTHIQSSSSASLFPSSSRRDVYYSCGACGFELNLSSVNRNTSTIGSK 60

Query: 61  ------------------------------------------RIKLLCRKCGNHIGNAYT 84
                                                     RIKLLCRKCGNHIGNA +
Sbjct: 61  YDKSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGNHIGNARS 120

[Close]

BLAST of Cp4.1LG06g06430 vs. NCBI nr
Match: XP_011653802.1 (uncharacterized protein At4g08330, chloroplastic [Cucumis sativus] >KGN54566.1 hypothetical protein Csa_012047 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 5.77e-24
Identity = 65/151 (43.05%), Postives = 76/151 (50.33%), Query Frame = 0


Query: 1   MRQSPVFEDDHVEGTHVRAFSSPSLCPSSSRRDVYY------------------------ 60
           MRQSPVF DD+  GTHV++FSS SL PSSSRRDVYY                        
Sbjct: 1   MRQSPVFGDDYAHGTHVQSFSSASLFPSSSRRDVYYSCGACGYELNLSSINRNTSTIGSK 60

Query: 61  ------------------------------------------RIKLLCRKCGNHIGNAYT 84
                                                     RIKLLCRKCGN+IGNA++
Sbjct: 61  YGKSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGNYIGNAHS 120

[Close]

BLAST of Cp4.1LG06g06430 vs. ExPASy TrEMBL
Match: A0A6J1FA98 (uncharacterized protein At4g08330, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111443711 PE=4 SV=1)

HSP 1 Score: 130 bits (328), Expect = 1.50e-36
Identity = 78/150 (52.00%), Postives = 81/150 (54.00%), Query Frame = 0


Query: 1   MRQSPVFEDDHVEGTHVRAFSSPSLCPSSSRRDVYY------------------------ 60
           MRQSPVFEDDHVEGTHVRAFSSPSLCPSSSRRDVYY                        
Sbjct: 1   MRQSPVFEDDHVEGTHVRAFSSPSLCPSSSRRDVYYSCGACGYELNLSSSNRNISTIGSK 60

Query: 61  ------------------------------------------RIKLLCRKCGNHIGNAYT 84
                                                     RIKLLCRKCGNHIGNAYT
Sbjct: 61  YGKSIKRGIISFLNIDESRFTQVDQLQCVPHFSKHSWGLFQRRIKLLCRKCGNHIGNAYT 120

[Close]

BLAST of Cp4.1LG06g06430 vs. ExPASy TrEMBL
Match: A0A6J1II32 (uncharacterized protein At4g08330, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111477108 PE=4 SV=1)

HSP 1 Score: 128 bits (321), Expect = 1.73e-35
Identity = 77/150 (51.33%), Postives = 80/150 (53.33%), Query Frame = 0


Query: 1   MRQSPVFEDDHVEGTHVRAFSSPSLCPSSSRRDVYY------------------------ 60
           MRQSPVF DDHVEGTHVRAFSSPSLCPSSSRRDVYY                        
Sbjct: 1   MRQSPVFGDDHVEGTHVRAFSSPSLCPSSSRRDVYYSCGACGYELNLSSSNRNISTIGSK 60

Query: 61  ------------------------------------------RIKLLCRKCGNHIGNAYT 84
                                                     RIKLLCRKCGNHIGNAYT
Sbjct: 61  YGKSIKRGIISFLNIDESRFTQVDQLQCVPHFSKHSWGLFQRRIKLLCRKCGNHIGNAYT 120

[Close]

BLAST of Cp4.1LG06g06430 vs. ExPASy TrEMBL
Match: A0A0A0L375 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G363480 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.79e-24
Identity = 65/151 (43.05%), Postives = 76/151 (50.33%), Query Frame = 0


Query: 1   MRQSPVFEDDHVEGTHVRAFSSPSLCPSSSRRDVYY------------------------ 60
           MRQSPVF DD+  GTHV++FSS SL PSSSRRDVYY                        
Sbjct: 1   MRQSPVFGDDYAHGTHVQSFSSASLFPSSSRRDVYYSCGACGYELNLSSINRNTSTIGSK 60

Query: 61  ------------------------------------------RIKLLCRKCGNHIGNAYT 84
                                                     RIKLLCRKCGN+IGNA++
Sbjct: 61  YGKSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGNYIGNAHS 120

[Close]

BLAST of Cp4.1LG06g06430 vs. ExPASy TrEMBL
Match: A0A5D3D741 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1493G00930 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.95e-24
Identity = 64/151 (42.38%), Postives = 76/151 (50.33%), Query Frame = 0


Query: 1   MRQSPVFEDDHVEGTHVRAFSSPSLCPSSSRRDVYY------------------------ 60
           MRQSPVF DD+  GTH+++FSS SL PSSSRRDVYY                        
Sbjct: 1   MRQSPVFGDDYAHGTHIQSFSSASLFPSSSRRDVYYSCGACGYELNLSSINRNTSTIGSK 60

Query: 61  ------------------------------------------RIKLLCRKCGNHIGNAYT 84
                                                     RIKLLCRKCGN+IGNA++
Sbjct: 61  YGKSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGNYIGNAHS 120

[Close]

BLAST of Cp4.1LG06g06430 vs. ExPASy TrEMBL
Match: A0A1S3B9P1 (uncharacterized protein At4g08330, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487585 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.95e-24
Identity = 64/151 (42.38%), Postives = 76/151 (50.33%), Query Frame = 0


Query: 1   MRQSPVFEDDHVEGTHVRAFSSPSLCPSSSRRDVYY------------------------ 60
           MRQSPVF DD+  GTH+++FSS SL PSSSRRDVYY                        
Sbjct: 1   MRQSPVFGDDYAHGTHIQSFSSASLFPSSSRRDVYYSCGACGYELNLSSINRNTSTIGSK 60

Query: 61  ------------------------------------------RIKLLCRKCGNHIGNAYT 84
                                                     RIKLLCRKCGN+IGNA++
Sbjct: 61  YGKSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGNYIGNAHS 120

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g06430 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG06g06430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937411.1	3.10e-36	52.00	uncharacterized protein At4g08330, chloroplastic-like [Cucurbita moschata] >KAG6...	[more]
XP_023534843.1	3.10e-36	52.00	uncharacterized protein At4g08330, chloroplastic-like [Cucurbita pepo subsp. pep...	[more]
XP_022976871.1	3.57e-35	51.33	uncharacterized protein At4g08330, chloroplastic-like [Cucurbita maxima]	[more]
XP_038896624.1	3.97e-24	43.33	uncharacterized protein At4g08330, chloroplastic [Benincasa hispida]	[more]
XP_011653802.1	5.77e-24	43.05	uncharacterized protein At4g08330, chloroplastic [Cucumis sativus] >KGN54566.1 h...	[more]

BLAST of Cp4.1LG06g06430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FA98	1.50e-36	52.00	uncharacterized protein At4g08330, chloroplastic-like OS=Cucurbita moschata OX=3...	[more]
A0A6J1II32	1.73e-35	51.33	uncharacterized protein At4g08330, chloroplastic-like OS=Cucurbita maxima OX=366...	[more]
A0A0A0L375	2.79e-24	43.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G363480 PE=4 SV=1	[more]
A0A5D3D741	3.95e-24	42.38	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B9P1	3.95e-24	42.38	uncharacterized protein At4g08330, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1...	[more]

BLAST of Cp4.1LG06g06430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG06g06430.1	Cp4.1LG06g06430.1	mRNA