Cp4.1LG06g05280 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG06g05280
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG06: 3175497 .. 3177148 (-)
RNA-Seq Expression	Cp4.1LG06g05280
Synteny	Cp4.1LG06g05280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCTCTGTGGAATTTAGAAGACAAATGGAAGCTCTCAACGCAACAAGCCTTCATTCTCTTAACGTGCACGGCGGTCGCCGTCCTAGGGTTTTGCGCGGCGGCGTGGGCGAAACAGAGGAAGTGCGAGAAGACAGAGCGCCGACAGACGAAGGCGGTGGAGAGGTGGTGGTGGAAGGGGGCAGCGGATACGCGGAAGGTGAGCGGCGGCGGAGAGACGCCGGTGCGGCTGTTGGGCGGCGAAGGGGAAGGGGAAGATTTCGGAAGCCGGAATTCGACGGCGGCGGTGTGGCAACGGCCGATTTTAATGGGGGAAAAGTGTGAGATGCTGAAATACAGTGGGCTTATTCTGTACGACGAAAGGGGAAGATTGCTGCAGGATCAAATTGCCGCCATGGAAAACGGTTACAAGGTGCTGCTTCGTAAGTTCTTTCGGAGTTTTTTCTTAAAATATAAAAAATAAAAATAAAAAATAATTTTTATCTTAAAATTATGAATATTAATTTTAACAATTTTTTTTTTAATTTTTATTTTGATCAAATTACACCTTAATTTTATTCATTTAATAAGTTATCGTTTTTTTTTTTTTTGTCTCATTCAATAAAATAAATTATTATAATTTAAGTATTTAAAAACATTTTCTTCTATCAATTCAATAAATTAATATATTAATTTTTTTTTCTTTTTGATATAGTCATTTAGTGCTAATATGTACATTATATTTTGTATAATATATATATATATATAAATAATGAGTTCAAGAATATTTAAACAGTTTTTAAAATTAAATTAGGGGTCGAGTTGACGGTAATTAAACTAATAATAAAATATTATACGGTAAATTTAAAAACTCAGAATGAGAACAGACAAATTTAATGTCAATTATTACTGAGTTATGTTGACTTCGTTATGCATTGTGTAGGACGGAGACGGTATAATAGTAAAAACGAGGTTGAAGGATCTACTCTAATGTCCTTCGTCTTTTATGGGAATCTTCAAAAAGAGGTGTAAAAATTATACGAAGGGGTGAGCTTTTCCCGCGTAATATCCCTTTCTTCTTTTGGAATCATTTTTTTCCTTTTGTTTACACGTTGTCCACTTTTCGTTTGTGCCTCTCGACATTTTTACGTTGCATAAAAGAATTCAGATAGATAGTCGATTAGAAACATCACCTCGACGGGAGTTAAAAGAATATGGTTCTCGAGCTTGTAATAACAAACGTTTAATAGAACTGTGAGCTTTATATTTGGTCTGCGCAAGTGGATCGAGGTGATTCTTCAAATACAAACAGCTTGTAATAGAACGAACAAAGTTTTTCAATCACAAGGCTATAAGATATTACAATGTTCTTCATGCTTGAGGATCTTTTGACTGATTGACTGCTAAAAAAACACAAATCAGTCAACTTAACTGGAAAAATGAATGAGAGGCTGATTTTACAACAAATCACACCGCAGCCAGACACGGTTCGTTGGCTAACGTCGAGTCGAACGACACATCAATGATCAACCCTCCGAAATCTATGGTTCCTGCGGTAAACGAAGAAAGTTCGGTTGGTTTTCCTCTCATTTGCCACACTATGTATATAAAACTAGCCGTCCAAGCCCACCACTAGTAGACATTGTCCGCTTTGACTTGTTACGTATCGTC

mRNA sequence

ATGGAAGCTCTGTGGAATTTAGAAGACAAATGGAAGCTCTCAACGCAACAAGCCTTCATTCTCTTAACGTGCACGGCGGTCGCCGTCCTAGGGTTTTGCGCGGCGGCGTGGGCGAAACAGAGGAAGTGCGAGAAGACAGAGCGCCGACAGACGAAGGCGGTGGAGAGGTGGTGGTGGAAGGGGGCAGCGGATACGCGGAAGGTGAGCGGCGGCGGAGAGACGCCGGTGCGGCTGTTGGGCGGCGAAGGGGAAGGGGAAGATTTCGGAAGCCGGAATTCGACGGCGGCGGTGTGGCAACGGCCGATTTTAATGGGGGAAAAGTGTGAGATGCTGAAATACAGTGGGCTTATTCTGTACGACGAAAGGGGAAGATTGCTGCAGGATCAAATTGCCGCCATGGAAAACGGTTACAAGGTGCTGCTTCGACGGAGACGGTATAATAGTAAAAACGAGGTTGAAGGATCTACTCTAATGTCCTTCGTCTTTTATGGGAATCTTCAAAAAGAGGTGTAAAAATTATACGAAGGGGTGAGCTTTTCCCGCGTAATATCCCTTTCTTCTTTTGGAATCATTTTTTTCCTTTTGTTTACACGTTGTCCACTTTTCGTTTGTGCCTCTCGACATTTTTACGTTGCATAAAAGAATTCAGATAGATAGTCGATTAGAAACATCACCTCGACGGGAGTTAAAAGAATATGGTTCTCGAGCTTGTAATAACAAACGTTTAATAGAACTGTGAGCTTTATATTTGGTCTGCGCAAGTGGATCGAGGTGATTCTTCAAATACAAACAGCTTGTAATAGAACGAACAAAGTTTTTCAATCACAAGGCTATAAGATATTACAATGTTCTTCATGCTTGAGGATCTTTTGACTGATTGACTGCTAAAAAAACACAAATCAGTCAACTTAACTGGAAAAATGAATGAGAGGCTGATTTTACAACAAATCACACCGCAGCCAGACACGGTTCGTTGGCTAACGTCGAGTCGAACGACACATCAATGATCAACCCTCCGAAATCTATGGTTCCTGCGGTAAACGAAGAAAGTTCGGTTGGTTTTCCTCTCATTTGCCACACTATGTATATAAAACTAGCCGTCCAAGCCCACCACTAGTAGACATTGTCCGCTTTGACTTGTTACGTATCGTC

Coding sequence (CDS)

ATGGAAGCTCTGTGGAATTTAGAAGACAAATGGAAGCTCTCAACGCAACAAGCCTTCATTCTCTTAACGTGCACGGCGGTCGCCGTCCTAGGGTTTTGCGCGGCGGCGTGGGCGAAACAGAGGAAGTGCGAGAAGACAGAGCGCCGACAGACGAAGGCGGTGGAGAGGTGGTGGTGGAAGGGGGCAGCGGATACGCGGAAGGTGAGCGGCGGCGGAGAGACGCCGGTGCGGCTGTTGGGCGGCGAAGGGGAAGGGGAAGATTTCGGAAGCCGGAATTCGACGGCGGCGGTGTGGCAACGGCCGATTTTAATGGGGGAAAAGTGTGAGATGCTGAAATACAGTGGGCTTATTCTGTACGACGAAAGGGGAAGATTGCTGCAGGATCAAATTGCCGCCATGGAAAACGGTTACAAGGTGCTGCTTCGACGGAGACGGTATAATAGTAAAAACGAGGTTGAAGGATCTACTCTAATGTCCTTCGTCTTTTATGGGAATCTTCAAAAAGAGGTGTAA

Protein sequence

MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAAAWAKQRKCEKTERRQTKAVERWWWKGAADTRKVSGGGETPVRLLGGEGEGEDFGSRNSTAAVWQRPILMGEKCEMLKYSGLILYDERGRLLQDQIAAMENGYKVLLRRRRYNSKNEVEGSTLMSFVFYGNLQKEV

Homology

[Close]

BLAST of Cp4.1LG06g05280 vs. NCBI nr
Match: XP_023534958.1 (uncharacterized protein LOC111796532 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 345 bits (884), Expect = 1.19e-119
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAAAWAKQRKCEKTERRQTKAVERWWWK 60
           MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAAAWAKQRKCEKTERRQTKAVERWWWK
Sbjct: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAAAWAKQRKCEKTERRQTKAVERWWWK 60

Query: 61  GAADTRKVSGGGETPVRLLGGEGEGEDFGSRNSTAAVWQRPILMGEKCEMLKYSGLILYD 120
           GAADTRKVSGGGETPVRLLGGEGEGEDFGSRNSTAAVWQRPILMGEKCEMLKYSGLILYD
Sbjct: 61  GAADTRKVSGGGETPVRLLGGEGEGEDFGSRNSTAAVWQRPILMGEKCEMLKYSGLILYD 120

Query: 121 ERGRLLQDQIAAMENGYKVLLRRRRYNSKNEVEGSTLMSFVFYGNLQKEV 170
           ERGRLLQDQIAAMENGYKVLLRRRRYNSKNEVEGSTLMSFVFYGNLQKEV
Sbjct: 121 ERGRLLQDQIAAMENGYKVLLRRRRYNSKNEVEGSTLMSFVFYGNLQKEV 170

[Close]

BLAST of Cp4.1LG06g05280 vs. NCBI nr
Match: KAG6591775.1 (hypothetical protein SDJN03_14121, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 311 bits (797), Expect = 2.45e-106
Identity = 159/173 (91.91%), Postives = 162/173 (93.64%), Query Frame = 0


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAAAWAKQRKCEKTERRQTKAVERWWWK 60
           MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAAAWAKQRKCEKTERRQTKA ERWWWK
Sbjct: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAAAWAKQRKCEKTERRQTKAAERWWWK 60

Query: 61  GAADTRKVSGGG-ETPVRLLGGEGEGE--DFGSRNSTAAVWQRPILMGEKCEMLKYSGLI 120
           GAAD RKVSGGG ETP RLL GEGEGE  DFGSRNSTAAVWQRPILMGEKCEMLKYSGLI
Sbjct: 61  GAADRRKVSGGGGETPERLLSGEGEGEGEDFGSRNSTAAVWQRPILMGEKCEMLKYSGLI 120

Query: 121 LYDERGRLLQDQIAAMENGYKVLLRRRRYNSKNEVEGSTLMSFVFYGNLQKEV 170
           LYDERGRLLQDQIAAMENGYKVLLRR   +SK+EVEGSTLM F+FYGNLQKEV
Sbjct: 121 LYDERGRLLQDQIAAMENGYKVLLRREWRDSKHEVEGSTLMRFLFYGNLQKEV 173

[Close]

BLAST of Cp4.1LG06g05280 vs. NCBI nr
Match: XP_022935987.1 (uncharacterized protein LOC111442724 isoform X1 [Cucurbita moschata])

HSP 1 Score: 304 bits (779), Expect = 1.14e-103
Identity = 158/173 (91.33%), Postives = 159/173 (91.91%), Query Frame = 0


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAAAWAKQRKCEKTERRQTKAVERWWWK 60
           MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAAAWAKQRKCEKTERRQTKA ERWWWK
Sbjct: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAAAWAKQRKCEKTERRQTKAAERWWWK 60

Query: 61  GAADTRKVSGGG-ETPVRLLGGEGEGE--DFGSRNSTAAVWQRPILMGEKCEMLKYSGLI 120
           GAAD RKVSGGG ETP RLL GEGEGE  DFGSRNSTAAVWQRPILMGEKCEMLKYSGLI
Sbjct: 61  GAADRRKVSGGGGETPERLLSGEGEGEGEDFGSRNSTAAVWQRPILMGEKCEMLKYSGLI 120

Query: 121 LYDERGRLLQDQIAAMENGYKVLLRRRRYNSKNEVEGSTLMSFVFYGNLQKEV 170
           LYDERGRLLQDQIAAMENGYKVLLRR      NEVEGSTLM F+FYGNLQKEV
Sbjct: 121 LYDERGRLLQDQIAAMENGYKVLLRR-----VNEVEGSTLMRFLFYGNLQKEV 168

[Close]

BLAST of Cp4.1LG06g05280 vs. NCBI nr
Match: XP_022976856.1 (uncharacterized protein LOC111477103 isoform X1 [Cucurbita maxima])

HSP 1 Score: 301 bits (772), Expect = 5.32e-102
Identity = 151/162 (93.21%), Postives = 154/162 (95.06%), Query Frame = 0


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAAAWAKQRKCEKTERRQTKAVERWWWK 60
           MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAA WAKQRKCEKTERRQTKA ERWWWK
Sbjct: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRKCEKTERRQTKATERWWWK 60

Query: 61  GAADTRKVSGGGETPVRLLGGEGEGEDFGSRNSTAAVWQRPILMGEKCEMLKYSGLILYD 120
           GAAD RKVSGGGETPVRLLGGEGE  DFGSRNSTAAVWQRPILMGEKCEMLKYSGLILYD
Sbjct: 61  GAADRRKVSGGGETPVRLLGGEGE--DFGSRNSTAAVWQRPILMGEKCEMLKYSGLILYD 120

Query: 121 ERGRLLQDQIAAMENGYKVLLRRRRYNSKNEVEGSTLMSFVF 162
           ERGRLLQDQIAAMENGYKVLLRR R NSK++VEGSTLM F+F
Sbjct: 121 ERGRLLQDQIAAMENGYKVLLRRGRRNSKDKVEGSTLMPFLF 160

[Close]

BLAST of Cp4.1LG06g05280 vs. NCBI nr
Match: XP_023534959.1 (uncharacterized protein LOC111796532 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 283 bits (725), Expect = 1.16e-95
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAAAWAKQRKCEKTERRQTKAVERWWWK 60
           MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAAAWAKQRKCEKTERRQTKAVERWWWK
Sbjct: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAAAWAKQRKCEKTERRQTKAVERWWWK 60

Query: 61  GAADTRKVSGGGETPVRLLGGEGEGEDFGSRNSTAAVWQRPILMGEKCEMLKYSGLILYD 120
           GAADTRKVSGGGETPVRLLGGEGEGEDFGSRNSTAAVWQRPILMGEKCEMLKYSGLILYD
Sbjct: 61  GAADTRKVSGGGETPVRLLGGEGEGEDFGSRNSTAAVWQRPILMGEKCEMLKYSGLILYD 120

Query: 121 ERGRLLQDQIAAMENGYK 138
           ERGRLLQDQIAAMENGYK
Sbjct: 121 ERGRLLQDQIAAMENGYK 138

[Close]

BLAST of Cp4.1LG06g05280 vs. ExPASy TrEMBL
Match: A0A6J1F750 (uncharacterized protein LOC111442724 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111442724 PE=4 SV=1)

HSP 1 Score: 304 bits (779), Expect = 5.53e-104
Identity = 158/173 (91.33%), Postives = 159/173 (91.91%), Query Frame = 0


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAAAWAKQRKCEKTERRQTKAVERWWWK 60
           MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAAAWAKQRKCEKTERRQTKA ERWWWK
Sbjct: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAAAWAKQRKCEKTERRQTKAAERWWWK 60

Query: 61  GAADTRKVSGGG-ETPVRLLGGEGEGE--DFGSRNSTAAVWQRPILMGEKCEMLKYSGLI 120
           GAAD RKVSGGG ETP RLL GEGEGE  DFGSRNSTAAVWQRPILMGEKCEMLKYSGLI
Sbjct: 61  GAADRRKVSGGGGETPERLLSGEGEGEGEDFGSRNSTAAVWQRPILMGEKCEMLKYSGLI 120

Query: 121 LYDERGRLLQDQIAAMENGYKVLLRRRRYNSKNEVEGSTLMSFVFYGNLQKEV 170
           LYDERGRLLQDQIAAMENGYKVLLRR      NEVEGSTLM F+FYGNLQKEV
Sbjct: 121 LYDERGRLLQDQIAAMENGYKVLLRR-----VNEVEGSTLMRFLFYGNLQKEV 168

[Close]

BLAST of Cp4.1LG06g05280 vs. ExPASy TrEMBL
Match: A0A6J1II18 (uncharacterized protein LOC111477103 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111477103 PE=4 SV=1)

HSP 1 Score: 301 bits (772), Expect = 2.58e-102
Identity = 151/162 (93.21%), Postives = 154/162 (95.06%), Query Frame = 0


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAAAWAKQRKCEKTERRQTKAVERWWWK 60
           MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAA WAKQRKCEKTERRQTKA ERWWWK
Sbjct: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRKCEKTERRQTKATERWWWK 60

Query: 61  GAADTRKVSGGGETPVRLLGGEGEGEDFGSRNSTAAVWQRPILMGEKCEMLKYSGLILYD 120
           GAAD RKVSGGGETPVRLLGGEGE  DFGSRNSTAAVWQRPILMGEKCEMLKYSGLILYD
Sbjct: 61  GAADRRKVSGGGETPVRLLGGEGE--DFGSRNSTAAVWQRPILMGEKCEMLKYSGLILYD 120

Query: 121 ERGRLLQDQIAAMENGYKVLLRRRRYNSKNEVEGSTLMSFVF 162
           ERGRLLQDQIAAMENGYKVLLRR R NSK++VEGSTLM F+F
Sbjct: 121 ERGRLLQDQIAAMENGYKVLLRRGRRNSKDKVEGSTLMPFLF 160

[Close]

BLAST of Cp4.1LG06g05280 vs. ExPASy TrEMBL
Match: A0A6J1IND6 (uncharacterized protein LOC111477103 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111477103 PE=4 SV=1)

HSP 1 Score: 276 bits (707), Expect = 2.22e-93
Identity = 137/144 (95.14%), Postives = 139/144 (96.53%), Query Frame = 0


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAAAWAKQRKCEKTERRQTKAVERWWWK 60
           MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAA WAKQRKCEKTERRQTKA ERWWWK
Sbjct: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRKCEKTERRQTKATERWWWK 60

Query: 61  GAADTRKVSGGGETPVRLLGGEGEGEDFGSRNSTAAVWQRPILMGEKCEMLKYSGLILYD 120
           GAAD RKVSGGGETPVRLLGGEGE  DFGSRNSTAAVWQRPILMGEKCEMLKYSGLILYD
Sbjct: 61  GAADRRKVSGGGETPVRLLGGEGE--DFGSRNSTAAVWQRPILMGEKCEMLKYSGLILYD 120

Query: 121 ERGRLLQDQIAAMENGYKVLLRRR 144
           ERGRLLQDQIAAMENGYKVLLR++
Sbjct: 121 ERGRLLQDQIAAMENGYKVLLRKQ 142

[Close]

BLAST of Cp4.1LG06g05280 vs. ExPASy TrEMBL
Match: A0A6J1IGV7 (uncharacterized protein LOC111477103 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111477103 PE=4 SV=1)

HSP 1 Score: 269 bits (688), Expect = 2.30e-90
Identity = 133/138 (96.38%), Postives = 133/138 (96.38%), Query Frame = 0


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAAAWAKQRKCEKTERRQTKAVERWWWK 60
           MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAA WAKQRKCEKTERRQTKA ERWWWK
Sbjct: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRKCEKTERRQTKATERWWWK 60

Query: 61  GAADTRKVSGGGETPVRLLGGEGEGEDFGSRNSTAAVWQRPILMGEKCEMLKYSGLILYD 120
           GAAD RKVSGGGETPVRLLGGEGE  DFGSRNSTAAVWQRPILMGEKCEMLKYSGLILYD
Sbjct: 61  GAADRRKVSGGGETPVRLLGGEGE--DFGSRNSTAAVWQRPILMGEKCEMLKYSGLILYD 120

Query: 121 ERGRLLQDQIAAMENGYK 138
           ERGRLLQDQIAAMENGYK
Sbjct: 121 ERGRLLQDQIAAMENGYK 136

[Close]

BLAST of Cp4.1LG06g05280 vs. ExPASy TrEMBL
Match: A0A6J1FC12 (uncharacterized protein LOC111442724 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111442724 PE=4 SV=1)

HSP 1 Score: 267 bits (682), Expect = 1.44e-89
Identity = 135/142 (95.07%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAAAWAKQRKCEKTERRQTKAVERWWWK 60
           MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAAAWAKQRKCEKTERRQTKA ERWWWK
Sbjct: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAAAWAKQRKCEKTERRQTKAAERWWWK 60

Query: 61  GAADTRKVSGGG-ETPVRLLGGEGEGE--DFGSRNSTAAVWQRPILMGEKCEMLKYSGLI 120
           GAAD RKVSGGG ETP RLL GEGEGE  DFGSRNSTAAVWQRPILMGEKCEMLKYSGLI
Sbjct: 61  GAADRRKVSGGGGETPERLLSGEGEGEGEDFGSRNSTAAVWQRPILMGEKCEMLKYSGLI 120

Query: 121 LYDERGRLLQDQIAAMENGYKV 139
           LYDERGRLLQDQIAAMENGYKV
Sbjct: 121 LYDERGRLLQDQIAAMENGYKV 142

[Close]

BLAST of Cp4.1LG06g05280 vs. TAIR 10
Match: AT3G14760.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible; Has 63 Blast hits to 63 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 79.3 bits (194), Expect = 3.2e-15
Identity = 54/150 (36.00%), Postives = 78/150 (52.00%), Query Frame = 0


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAAA----------------WA------ 60
           MEALW LE+K KL+T++A ++L  TA AV   C AA                WA      
Sbjct: 1   MEALWKLEEKLKLTTKEAVVILVGTAAAVTLLCIAAAFLNRNSRGKQVADAEWASETAFG 60

Query: 61  -----KQRKCEKTERRQTKAVERWWWKGAADTRKVSGGGETPVRLLGGEGEGEDFGSRNS 120
                ++RKC+ ++ ++T  +  + W  AA   ++    + P+  +          S N+
Sbjct: 61  SRTMEEKRKCKWSKVKRT-LMGSFCWSSAAKWMEMETRRQPPLLAVKER-------SLNA 120

Query: 121 TAAVWQRPILMGEKCEMLKYSGLILYDERG 124
              VWQRPILMGEKCE+ ++SGLILYDE G
Sbjct: 121 VDPVWQRPILMGEKCELPRFSGLILYDECG 142

[Close]

BLAST of Cp4.1LG06g05280 vs. TAIR 10
Match: AT1G49000.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: stem; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18560.1); Has 105 Blast hits to 105 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.8 bits (112), Expect = 1.0e-05
Identity = 20/32 (62.50%), Postives = 24/32 (75.00%), Query Frame = 0


Query: 97  VWQRPILMGEKCEMLKYSGLILYDERGRLLQD 129
           +WQR ILMG KCE L +SG+I YD  GRLL +
Sbjct: 107 LWQREILMGGKCEPLDFSGVIYYDSNGRLLNE 138

[Close]

BLAST of Cp4.1LG06g05280 vs. TAIR 10
Match: AT3G18560.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G49000.1); Has 95 Blast hits to 95 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 8.8e-05
Identity = 26/55 (47.27%), Postives = 33/55 (60.00%), Query Frame = 0


Query: 73  ETPVRLLGGEGEGEDFGSRNSTAAVWQRPILMGEKCEMLKYSGLILYDERGRLLQ 128
           +T V ++  E E E++G       VWQR ILMG KCE L YSG+I YD  G  L+
Sbjct: 117 KTAVEMVMEEDE-EEYG-------VWQREILMGGKCEPLDYSGVIYYDCSGHQLK 163

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g05280 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG06g05280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023534958.1	1.19e-119	100.00	uncharacterized protein LOC111796532 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
KAG6591775.1	2.45e-106	91.91	hypothetical protein SDJN03_14121, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022935987.1	1.14e-103	91.33	uncharacterized protein LOC111442724 isoform X1 [Cucurbita moschata]	[more]
XP_022976856.1	5.32e-102	93.21	uncharacterized protein LOC111477103 isoform X1 [Cucurbita maxima]	[more]
XP_023534959.1	1.16e-95	100.00	uncharacterized protein LOC111796532 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cp4.1LG06g05280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F750	5.53e-104	91.33	uncharacterized protein LOC111442724 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1II18	2.58e-102	93.21	uncharacterized protein LOC111477103 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1IND6	2.22e-93	95.14	uncharacterized protein LOC111477103 isoform X3 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1IGV7	2.30e-90	96.38	uncharacterized protein LOC111477103 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1FC12	1.44e-89	95.07	uncharacterized protein LOC111442724 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Cp4.1LG06g05280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G14760.1	3.2e-15	36.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G49000.1	1.0e-05	62.50	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G18560.1	8.8e-05	47.27	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33237:SF21	TRANSMEMBRANE PROTEIN	coord: 1..55 coord: 86..138
None	No IPR available	PANTHER	PTHR33237	F2P16.13 PROTEIN-RELATED	coord: 1..55 coord: 86..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG06g05280.1	Cp4.1LG06g05280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane