Cp4.1LG05g14860 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG05g14860
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	transcription factor bHLH162-like
Location	Cp4.1LG05: 10341599 .. 10342571 (+)
RNA-Seq Expression	Cp4.1LG05g14860
Synteny	Cp4.1LG05g14860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATATACATATGGTCTGTTTTAACGTTGTTTGTGTCTGAAATTTCAGTGATTATTCGATGGAGAGAGGTCGGGAAGCAGCTGGGAACCAACAAAATGGAAGCACTAACAAGGTTGAAAGAAAGGTTTTGGAGAAGAATCGAAGAAACCAGATGAAATTGCTGTATTCCAACCTCAATTCTCTCCTCCCACCCAATCAATCCACTGTTTGTTTCAATTTTTCGATGTAATTAAGGTTTTTAAGGTTTGTTCTCAAATGGGTTCTCATCAAAATTTGAAATTTTTGTAGGATTCGCCATTGACGATGTTGGATCAGATAGAGGAGGCAATTAAGTACATACAATCACTTACCGTCAAGCTCGACAAAGTCAAGGAGAAGAAGAAGAGAATTCTGACGTCCGCCCCGACGAGGAGCCCGAGTAGTAACCTACCGGAATTGAAAATCAAAGAGATGGGTTCGGCTGTCGAGGTTGTTTTCACGACGGAGTTGAATGATCGGTTCTTATTTTATGAGATTATTCGCATCTTCCATGAAGAGCGAGTCGAGATCATCAATGCTACTTATTCTGTTCTCGATGACACCGTCCTTTACTCACTCCATGCCGAGGTATGGTGATCATAATTCATTAGTTTAAGCTTTTGAGTTTAGTAATGGTTTTGACGTGGTTACGAAGTGTTCGTAGATTGAAGACGTGTTGTACGCGTTCGGGGCAACCAAGCTAACGGAGAGGCTAAAAAGATTAGCTTATGAATGGAAGAGTGATGCAGAACAGCAGGCTGCAGGAGCTTCTTCCAGTGGTTATGGTGGAAGCCATCCGTCGGAGGACACTCCGACGGCGAGATACGGTGGCTGTTTTTAGGGCCACAGGATTGATTGGAAGCCAATTGGAAGATTTCAGTAGATTTCGAGTGGATAGGGAAATGGTCGATGGACCACCCATTATTTTAAGTGTTTTTATTATTATTATTATTATAA

mRNA sequence

ATATACATATGGTCTGTTTTAACGTTGTTTGTGTCTGAAATTTCAGTGATTATTCGATGGAGAGAGGTCGGGAAGCAGCTGGGAACCAACAAAATGGAAGCACTAACAAGGTTGAAAGAAAGGTTTTGGAGAAGAATCGAAGAAACCAGATGAAATTGCTGTATTCCAACCTCAATTCTCTCCTCCCACCCAATCAATCCACTGATTCGCCATTGACGATGTTGGATCAGATAGAGGAGGCAATTAAGTACATACAATCACTTACCGTCAAGCTCGACAAAGTCAAGGAGAAGAAGAAGAGAATTCTGACGTCCGCCCCGACGAGGAGCCCGAGTAGTAACCTACCGGAATTGAAAATCAAAGAGATGGGTTCGGCTGTCGAGGTTGTTTTCACGACGGAGTTGAATGATCGGTTCTTATTTTATGAGATTATTCGCATCTTCCATGAAGAGCGAGTCGAGATCATCAATGCTACTTATTCTGTTCTCGATGACACCGTCCTTTACTCACTCCATGCCGAGATTGAAGACGTGTTGTACGCGTTCGGGGCAACCAAGCTAACGGAGAGGCTAAAAAGATTAGCTTATGAATGGAAGAGTGATGCAGAACAGCAGGCTGCAGGAGCTTCTTCCAGTGGTTATGGTGGAAGCCATCCGTCGGAGGACACTCCGACGGCGAGATACGGTGGCTGTTTTTAGGGCCACAGGATTGATTGGAAGCCAATTGGAAGATTTCAGTAGATTTCGAGTGGATAGGGAAATGGTCGATGGACCACCCATTATTTTAAGTGTTTTTATTATTATTATTATTATAA

Coding sequence (CDS)

ATGGAGAGAGGTCGGGAAGCAGCTGGGAACCAACAAAATGGAAGCACTAACAAGGTTGAAAGAAAGGTTTTGGAGAAGAATCGAAGAAACCAGATGAAATTGCTGTATTCCAACCTCAATTCTCTCCTCCCACCCAATCAATCCACTGATTCGCCATTGACGATGTTGGATCAGATAGAGGAGGCAATTAAGTACATACAATCACTTACCGTCAAGCTCGACAAAGTCAAGGAGAAGAAGAAGAGAATTCTGACGTCCGCCCCGACGAGGAGCCCGAGTAGTAACCTACCGGAATTGAAAATCAAAGAGATGGGTTCGGCTGTCGAGGTTGTTTTCACGACGGAGTTGAATGATCGGTTCTTATTTTATGAGATTATTCGCATCTTCCATGAAGAGCGAGTCGAGATCATCAATGCTACTTATTCTGTTCTCGATGACACCGTCCTTTACTCACTCCATGCCGAGATTGAAGACGTGTTGTACGCGTTCGGGGCAACCAAGCTAACGGAGAGGCTAAAAAGATTAGCTTATGAATGGAAGAGTGATGCAGAACAGCAGGCTGCAGGAGCTTCTTCCAGTGGTTATGGTGGAAGCCATCCGTCGGAGGACACTCCGACGGCGAGATACGGTGGCTGTTTTTAG

Protein sequence

MERGREAAGNQQNGSTNKVERKVLEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTMLDQIEEAIKYIQSLTVKLDKVKEKKKRILTSAPTRSPSSNLPELKIKEMGSAVEVVFTTELNDRFLFYEIIRIFHEERVEIINATYSVLDDTVLYSLHAEIEDVLYAFGATKLTERLKRLAYEWKSDAEQQAAGASSSGYGGSHPSEDTPTARYGGCF

Homology

[Close]

BLAST of Cp4.1LG05g14860 vs. ExPASy Swiss-Prot
Match: F4JIJ7 (Transcription factor bHLH162 OS=Arabidopsis thaliana OX=3702 GN=BHLH162 PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.0e-23
Identity = 73/184 (39.67%), Postives = 115/184 (62.50%), Query Frame = 0


Query: 10  NQQNGSTNKVERKVLEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTMLDQIEEAIKYIQSL 69
           +   G +  V+RK +EKNRR QMK LYS L SLLP + ST+ PLT+ DQ++EA  YI+ L
Sbjct: 5   HSNTGQSRSVDRKTVEKNRRMQMKSLYSELISLLPHHSSTE-PLTLPDQLDEAANYIKKL 64

Query: 70  TVKLDKVKEKKKRI--------LTSAPTRSPSSN--------LPELKIKEMGSAVEVVFT 129
            V ++K +E+K+ +        L S  + S SS+        LP+++I+E GS   +   
Sbjct: 65  QVNVEKKRERKRNLVATTTLEKLNSVGSSSVSSSVDVSVPRKLPKIEIQETGSIFHIFLV 124

Query: 130 TELNDRFLFYEIIRIFHEE-RVEIINATYSVLDDTVLYSLHAEIEDVLYAFGA-TKLTER 176
           T L  +F+F EIIR+  EE   EI +A YS++DD V ++LH ++E+  + +GA +++ ER
Sbjct: 125 TSLEHKFMFCEIIRVLTEELGAEITHAGYSIVDDAVFHTLHCKVEE--HDYGARSQIPER 184

[Close]

BLAST of Cp4.1LG05g14860 vs. ExPASy Swiss-Prot
Match: F4I4E1 (Transcription factor bHLH167 OS=Arabidopsis thaliana OX=3702 GN=BHLH167 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-08
Identity = 49/177 (27.68%), Postives = 92/177 (51.98%), Query Frame = 0


Query: 4   GREAAGNQQNGSTNKVERKVLEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTMLDQIEEAI 63
           GR     + N S+ + +R + EK+RR +MK L+S L+S + P +    P      I++A 
Sbjct: 2   GRAREIGEGNSSSLREQRNLREKDRRMRMKHLFSILSSHVSPTRKLPVP----HLIDQAT 61

Query: 64  KYIQSLTVKLDKVKEKKKRILTS--APTRSPSSNLPELKIKEMGSAVEVVFTTELN-DRF 123
            Y+  L   ++ +KEKK+ +L          S  LP+L I+   S +E+    +LN  R 
Sbjct: 62  SYMIQLKENVNYLKEKKRTLLQGELGNLYEGSFLLPKLSIRSRDSTIEMNLIMDLNMKRV 121

Query: 124 LFYEIIRIFHEERVEIINATYSVLDDTVLYSLHAEIEDVLYAFGATKLTERLKRLAY 178
           + +E++ IF EE  ++++A    L+D   Y++ A+          +++ ER++++ Y
Sbjct: 122 MLHELVSIFEEEGAQVMSANLQNLNDRTTYTIIAQAIISRIGIDPSRIEERVRKIIY 174

[Close]

BLAST of Cp4.1LG05g14860 vs. ExPASy Swiss-Prot
Match: Q9XIJ1 (Transcription factor bHLH168 OS=Arabidopsis thaliana OX=3702 GN=BHLH168 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-08
Identity = 51/176 (28.98%), Postives = 96/176 (54.55%), Query Frame = 0


Query: 1   MERGREAAGNQQNGSTNKVERKVLEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTMLDQIE 60
           MER RE    + + S+ + +R + EK RR +MK L+S L+S + P +    P      I+
Sbjct: 1   MERAREI--GEGSASSLREQRNLREKERRMRMKHLFSILSSHVSPTRRLPVP----QLID 60

Query: 61  EAIKYIQSLTVKLDKVKEKKKRIL-TSAPTRSP-SSNLPELKIKEMGSAVEVVFTTELND 120
           +A+ Y+  L  K++ + E K+R+L      RS  SS LP+L I+ + S +E+    +LN 
Sbjct: 61  QAVSYMIQLKEKVNYLNEMKRRMLGGEVKNRSEGSSLLPKLSIRSLDSIIEMNLVMDLNM 120

Query: 121 R-FLFYEIIRIFHEERVEIINATYSVLDDTVLYSLHAEIEDVLYAFGATKLTERLK 174
           +  + ++++ +F EE  ++++A    L+D   Y++ A+          +++ ERL+
Sbjct: 121 KGVMLHKLVSVFEEEGAQVMSANLQNLNDRTFYTIIAQAIICRIGIDPSRIEERLR 170

[Close]

BLAST of Cp4.1LG05g14860 vs. ExPASy Swiss-Prot
Match: Q9FLI1 (Transcription factor bHLH36 OS=Arabidopsis thaliana OX=3702 GN=BHLH36 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 3.1e-04
Identity = 39/172 (22.67%), Postives = 86/172 (50.00%), Query Frame = 0


Query: 18  KVERKVLEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTMLDQIEEAIKYIQSLTVKLDKVK 77
           K+  +  E+ RR +M  LY++L SLLP +       T  DQ+ EA+ YI+ L  K+ ++ 
Sbjct: 3   KMMHRETERQRRQEMASLYASLRSLLPLHFIKGKRSTS-DQVNEAVNYIKYLQRKIKELS 62

Query: 78  EKKKRILTSAPTRSPSSNLPELK-------------IKEMGSAVEVVFTTE-LNDRFLFY 137
            ++  ++  +      S+  + K             +++    VE++ ++     +  F 
Sbjct: 63  VRRDDLMVLSRGSLLGSSNGDFKEDVEMISGKNHVVVRQCLVGVEIMLSSRCCGGQPRFS 122

Query: 138 EIIRIFHEERVEIINATYSVLDDTVLYSLHAEIEDVLYAFGATKLTERLKRL 176
            ++++  E  + ++N+  S++DD ++Y++ AE+ D+       +L +RL R+
Sbjct: 123 SVLQVLSEYGLCLLNSISSIVDDRLVYTIQAEVNDMALMIDLAELEKRLIRM 173

[Close]

BLAST of Cp4.1LG05g14860 vs. NCBI nr
Match: XP_023532358.1 (transcription factor bHLH162-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 402 bits (1034), Expect = 4.25e-141
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MERGREAAGNQQNGSTNKVERKVLEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTMLDQIE 60
           MERGREAAGNQQNGSTNKVERKVLEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTMLDQIE
Sbjct: 1   MERGREAAGNQQNGSTNKVERKVLEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTMLDQIE 60

Query: 61  EAIKYIQSLTVKLDKVKEKKKRILTSAPTRSPSSNLPELKIKEMGSAVEVVFTTELNDRF 120
           EAIKYIQSLTVKLDKVKEKKKRILTSAPTRSPSSNLPELKIKEMGSAVEVVFTTELNDRF
Sbjct: 61  EAIKYIQSLTVKLDKVKEKKKRILTSAPTRSPSSNLPELKIKEMGSAVEVVFTTELNDRF 120

Query: 121 LFYEIIRIFHEERVEIINATYSVLDDTVLYSLHAEIEDVLYAFGATKLTERLKRLAYEWK 180
           LFYEIIRIFHEERVEIINATYSVLDDTVLYSLHAEIEDVLYAFGATKLTERLKRLAYEWK
Sbjct: 121 LFYEIIRIFHEERVEIINATYSVLDDTVLYSLHAEIEDVLYAFGATKLTERLKRLAYEWK 180

Query: 181 SDAEQQAAGASSSGYGGSHPSEDTPTARYGGCF 213
           SDAEQQAAGASSSGYGGSHPSEDTPTARYGGCF
Sbjct: 181 SDAEQQAAGASSSGYGGSHPSEDTPTARYGGCF 213

[Close]

BLAST of Cp4.1LG05g14860 vs. NCBI nr
Match: KAG6604790.1 (Transcription factor basic helix-loop-helix 162, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 399 bits (1026), Expect = 7.05e-140
Identity = 211/213 (99.06%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MERGREAAGNQQNGSTNKVERKVLEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTMLDQIE 60
           MERGREAAGNQQNGSTNKVERKVLEKNRRNQMKLLYSNLNSLLPPN+STDSPLT+LDQIE
Sbjct: 1   MERGREAAGNQQNGSTNKVERKVLEKNRRNQMKLLYSNLNSLLPPNKSTDSPLTVLDQIE 60

Query: 61  EAIKYIQSLTVKLDKVKEKKKRILTSAPTRSPSSNLPELKIKEMGSAVEVVFTTELNDRF 120
           EAIKYIQSLTVKLDKVKEKKKRILTSAPTRSPSSNLPELKIKEMGSAVEVVFTTELNDRF
Sbjct: 61  EAIKYIQSLTVKLDKVKEKKKRILTSAPTRSPSSNLPELKIKEMGSAVEVVFTTELNDRF 120

Query: 121 LFYEIIRIFHEERVEIINATYSVLDDTVLYSLHAEIEDVLYAFGATKLTERLKRLAYEWK 180
           LFYEIIRIFHEERVEIINATYSVLDDTVLYSLHAEIEDVLYAFGATKLTERLKRLAYEWK
Sbjct: 121 LFYEIIRIFHEERVEIINATYSVLDDTVLYSLHAEIEDVLYAFGATKLTERLKRLAYEWK 180

Query: 181 SDAEQQAAGASSSGYGGSHPSEDTPTARYGGCF 213
           SDAEQQAAGASSSGYGGSHPSEDTPTARYGGCF
Sbjct: 181 SDAEQQAAGASSSGYGGSHPSEDTPTARYGGCF 213

[Close]

BLAST of Cp4.1LG05g14860 vs. NCBI nr
Match: XP_022948053.1 (transcription factor bHLH162-like [Cucurbita moschata])

HSP 1 Score: 392 bits (1006), Expect = 7.89e-137
Identity = 207/213 (97.18%), Postives = 209/213 (98.12%), Query Frame = 0


Query: 1   MERGREAAGNQQNGSTNKVERKVLEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTMLDQIE 60
           MERGREAAGNQQNGSTNKVERKVLEKNRRNQMKLLYS LNSLLPPNQSTDSPLT+LDQIE
Sbjct: 1   MERGREAAGNQQNGSTNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIE 60

Query: 61  EAIKYIQSLTVKLDKVKEKKKRILTSAPTRSPSSNLPELKIKEMGSAVEVVFTTELNDRF 120
           EAIKYIQSLTVKLDKVKEKKKRIL SAPTRSPSSNLPELKIKEMGSAVEVVF TELNDRF
Sbjct: 61  EAIKYIQSLTVKLDKVKEKKKRILMSAPTRSPSSNLPELKIKEMGSAVEVVFMTELNDRF 120

Query: 121 LFYEIIRIFHEERVEIINATYSVLDDTVLYSLHAEIEDVLYAFGATKLTERLKRLAYEWK 180
           LFYEIIRIFHEER EIINATYSVLDDTVLYSLHAEIEDV+YAFGATKLTERLKRLAYEWK
Sbjct: 121 LFYEIIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERLKRLAYEWK 180

Query: 181 SDAEQQAAGASSSGYGGSHPSEDTPTARYGGCF 213
           SDAEQQAAGASSSGYGGSHPSEDTPTARYGGCF
Sbjct: 181 SDAEQQAAGASSSGYGGSHPSEDTPTARYGGCF 213

[Close]

BLAST of Cp4.1LG05g14860 vs. NCBI nr
Match: KAG6604789.1 (Transcription factor basic helix-loop-helix 162, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 247 bits (631), Expect = 1.31e-79
Identity = 142/222 (63.96%), Postives = 165/222 (74.32%), Query Frame = 0


Query: 1   MERGREAAG--NQQNGSTNKVERKVLEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTMLDQ 60
           ME  REA    NQQ+ +TNKVERKV+EKNRRNQMKLLYSNLNSLLPPN+STDSPLT+ DQ
Sbjct: 1   MESNREAGNQQNQQDVNTNKVERKVMEKNRRNQMKLLYSNLNSLLPPNKSTDSPLTVSDQ 60

Query: 61  IEEAIKYIQSLTVKLDKVKEKKKRILTS-------APTRSPSSNLPELKIKEMGSAVEVV 120
           IEEAIKYI+SL +KL K  EKK+RIL         +   S ++N PEL+IKEMGS VEVV
Sbjct: 61  IEEAIKYIKSLEMKLQKCMEKKERILARLNMSSALSDGASTNNNSPELRIKEMGSIVEVV 120

Query: 121 FTTELNDRFLFYEIIRIFHEERVEIINATYSVLDDTVLYSLHAEIEDVLYAFGATKLTER 180
           FT    D+ LF E+I +FHEER EIIN  YSV ++  LYS+HAEIEDV+Y  GA KL ER
Sbjct: 121 FTRGFEDQPLFDELIGVFHEERAEIINLNYSVHENMFLYSIHAEIEDVVYELGAKKLVER 180

Query: 181 LKRLAYEWKSDAEQQAAGASSSGYGGSHPSEDTPTARYGGCF 213
           L +L YEWKSDAE  A GASSSG+GG+HP  + PT   G  F
Sbjct: 181 LNKLVYEWKSDAEMVAGGASSSGHGGTHPPANIPTMSSGSHF 222

[Close]

BLAST of Cp4.1LG05g14860 vs. NCBI nr
Match: XP_022948054.1 (transcription factor bHLH162-like [Cucurbita moschata])

HSP 1 Score: 233 bits (594), Expect = 2.40e-74
Identity = 129/197 (65.48%), Postives = 148/197 (75.13%), Query Frame = 0


Query: 24  LEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTMLDQIEEAIKYIQSLTVKLDKVKEKKKRI 83
           +EKNRRNQMKLLYSNLNSLLPPNQSTDSPLT+ DQIEEAIKYI+SL +KL K KEKK+RI
Sbjct: 1   MEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERI 60

Query: 84  LTS-------APTRSPSSNLPELKIKEMGSAVEVVFTTELNDRFLFYEIIRIFHEERVEI 143
           L         +   S ++N PEL+IKEMGS VEVVFT    DR LF E+I +FHEER EI
Sbjct: 61  LARLNMSSALSDRASTNNNSPELRIKEMGSIVEVVFTRGFEDRSLFDELIGVFHEERAEI 120

Query: 144 INATYSVLDDTVLYSLHAEIEDVLYAFGATKLTERLKRLAYEWKSDAEQQAAGASSSGYG 203
           IN  YSV +D  LYS+HA+IEDV+Y  GA KL ERL +L YEWKSDAE  A GASSSG+G
Sbjct: 121 INLNYSVHEDMFLYSIHAQIEDVVYELGAKKLVERLNKLVYEWKSDAEMLAGGASSSGHG 180

Query: 204 GSHPSEDTPTARYGGCF 213
           G+HP  + PT   G  F
Sbjct: 181 GTHPPANIPTMSSGRHF 197

[Close]

BLAST of Cp4.1LG05g14860 vs. ExPASy TrEMBL
Match: A0A6J1G8B1 (transcription factor bHLH162-like OS=Cucurbita moschata OX=3662 GN=LOC111451747 PE=4 SV=1)

HSP 1 Score: 392 bits (1006), Expect = 3.82e-137
Identity = 207/213 (97.18%), Postives = 209/213 (98.12%), Query Frame = 0


Query: 1   MERGREAAGNQQNGSTNKVERKVLEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTMLDQIE 60
           MERGREAAGNQQNGSTNKVERKVLEKNRRNQMKLLYS LNSLLPPNQSTDSPLT+LDQIE
Sbjct: 1   MERGREAAGNQQNGSTNKVERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDSPLTVLDQIE 60

Query: 61  EAIKYIQSLTVKLDKVKEKKKRILTSAPTRSPSSNLPELKIKEMGSAVEVVFTTELNDRF 120
           EAIKYIQSLTVKLDKVKEKKKRIL SAPTRSPSSNLPELKIKEMGSAVEVVF TELNDRF
Sbjct: 61  EAIKYIQSLTVKLDKVKEKKKRILMSAPTRSPSSNLPELKIKEMGSAVEVVFMTELNDRF 120

Query: 121 LFYEIIRIFHEERVEIINATYSVLDDTVLYSLHAEIEDVLYAFGATKLTERLKRLAYEWK 180
           LFYEIIRIFHEER EIINATYSVLDDTVLYSLHAEIEDV+YAFGATKLTERLKRLAYEWK
Sbjct: 121 LFYEIIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGATKLTERLKRLAYEWK 180

Query: 181 SDAEQQAAGASSSGYGGSHPSEDTPTARYGGCF 213
           SDAEQQAAGASSSGYGGSHPSEDTPTARYGGCF
Sbjct: 181 SDAEQQAAGASSSGYGGSHPSEDTPTARYGGCF 213

[Close]

BLAST of Cp4.1LG05g14860 vs. ExPASy TrEMBL
Match: A0A6J1G8Q1 (transcription factor bHLH162-like OS=Cucurbita moschata OX=3662 GN=LOC111451748 PE=4 SV=1)

HSP 1 Score: 233 bits (594), Expect = 1.16e-74
Identity = 129/197 (65.48%), Postives = 148/197 (75.13%), Query Frame = 0


Query: 24  LEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTMLDQIEEAIKYIQSLTVKLDKVKEKKKRI 83
           +EKNRRNQMKLLYSNLNSLLPPNQSTDSPLT+ DQIEEAIKYI+SL +KL K KEKK+RI
Sbjct: 1   MEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERI 60

Query: 84  LTS-------APTRSPSSNLPELKIKEMGSAVEVVFTTELNDRFLFYEIIRIFHEERVEI 143
           L         +   S ++N PEL+IKEMGS VEVVFT    DR LF E+I +FHEER EI
Sbjct: 61  LARLNMSSALSDRASTNNNSPELRIKEMGSIVEVVFTRGFEDRSLFDELIGVFHEERAEI 120

Query: 144 INATYSVLDDTVLYSLHAEIEDVLYAFGATKLTERLKRLAYEWKSDAEQQAAGASSSGYG 203
           IN  YSV +D  LYS+HA+IEDV+Y  GA KL ERL +L YEWKSDAE  A GASSSG+G
Sbjct: 121 INLNYSVHEDMFLYSIHAQIEDVVYELGAKKLVERLNKLVYEWKSDAEMLAGGASSSGHG 180

Query: 204 GSHPSEDTPTARYGGCF 213
           G+HP  + PT   G  F
Sbjct: 181 GTHPPANIPTMSSGRHF 197

[Close]

BLAST of Cp4.1LG05g14860 vs. ExPASy TrEMBL
Match: A0A6J1I4R7 (transcription factor bHLH162-like OS=Cucurbita maxima OX=3661 GN=LOC111469622 PE=4 SV=1)

HSP 1 Score: 230 bits (586), Expect = 1.90e-73
Identity = 127/190 (66.84%), Postives = 149/190 (78.42%), Query Frame = 0


Query: 24  LEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTMLDQIEEAIKYIQSLTVKLDKVKEKKKRI 83
           +EKNRRNQMKLLYSNLNSLLPPN+STDSPLT+ DQIEEAIKYI+SL +KL K KEKK+RI
Sbjct: 1   MEKNRRNQMKLLYSNLNSLLPPNKSTDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERI 60

Query: 84  L-----TSAPT--RSPSSNLPELKIKEMGSAVEVVFTTELNDRFLFYEIIRIFHEERVEI 143
           L     +SAP+   S ++N PEL+IKEMGS VEVVF     D+ LF E+I +FHEER EI
Sbjct: 61  LASLNMSSAPSDRASTNNNSPELRIKEMGSIVEVVFKRGFEDQSLFDELIGVFHEERAEI 120

Query: 144 INATYSVLDDTVLYSLHAEIEDVLYAFGATKLTERLKRLAYEWKSDAEQQAAGASSSGYG 203
           IN  YS+ +D +LYS+HAEIEDV+Y  GA KL ERL +L YEWKSDAE  A GASSSG+G
Sbjct: 121 INLNYSIHEDMLLYSIHAEIEDVVYELGAKKLVERLNKLVYEWKSDAELLAGGASSSGHG 180

Query: 204 GSHPSEDTPT 206
           G+HP    PT
Sbjct: 181 GTHPPAKIPT 190

[Close]

BLAST of Cp4.1LG05g14860 vs. ExPASy TrEMBL
Match: A0A6J1FXP8 (transcription factor bHLH162-like OS=Cucurbita moschata OX=3662 GN=LOC111448656 PE=4 SV=1)

HSP 1 Score: 194 bits (493), Expect = 2.23e-59
Identity = 109/170 (64.12%), Postives = 134/170 (78.82%), Query Frame = 0


Query: 32  MKLLYSNLNSLLPPNQSTDSPLTMLDQIEEAIKYIQSLTVKLDKVKEKKKRILTS----- 91
           MK LYS LNSLLP + S + PL++LDQIEEAIKYI+SL +KL K +EKK+R         
Sbjct: 1   MKSLYSKLNSLLPTHHSNELPLSVLDQIEEAIKYIKSLELKLKKDEEKKERFTRRSSSSS 60

Query: 92  --APTRSPSSNLPELKIKEMGSAVEVVFTTELN-DRFLFYEIIRIFHEERVEIINATYSV 151
             APTRS + N PEL+IKEMGSAVEVV +T L  DRF+FYEII IF+EER EI+N +YSV
Sbjct: 61  YMAPTRSRNRNGPELRIKEMGSAVEVVLSTGLEEDRFIFYEIIHIFYEERAEIVNVSYSV 120

Query: 152 LDDTVLYSLHAEIEDVLYAFGATKLTERLKRLAYEWKSDAEQQAAGASSS 193
           + ++VLYSL+AEIEDV+Y FGATK TER+KRL Y W++DAE +AAG+SSS
Sbjct: 121 VGNSVLYSLYAEIEDVVYEFGATKPTERIKRLVYGWENDAEMKAAGSSSS 170

[Close]

BLAST of Cp4.1LG05g14860 vs. ExPASy TrEMBL
Match: A0A6J1JF05 (transcription factor bHLH162-like OS=Cucurbita maxima OX=3661 GN=LOC111483908 PE=4 SV=1)

HSP 1 Score: 191 bits (486), Expect = 2.19e-58
Identity = 110/183 (60.11%), Postives = 139/183 (75.96%), Query Frame = 0


Query: 32  MKLLYSNLNSLLPPNQSTDSPLTMLDQIEEAIKYIQSLTVKLDKVKEKKKRI-------L 91
           MK LYS LNSLLP + S + PL++ DQIEEAIKYI+SL +KL K +EKK+R        L
Sbjct: 1   MKSLYSKLNSLLPTHHSNEMPLSVSDQIEEAIKYIKSLELKLKKNEEKKERFTRQSSSSL 60

Query: 92  TSAPTRSPSSNLPELKIKEMGSAVEVVFTTELN-DRFLFYEIIRIFHEERVEIINATYSV 151
            +APTRS + N PEL+IKE+GSAVEVV +  L  DRF+FYEII IF++ER EI+N +YSV
Sbjct: 61  YTAPTRSRNRNGPELRIKEIGSAVEVVLSIGLEEDRFIFYEIIHIFYQERAEIVNVSYSV 120

Query: 152 LDDTVLYSLHAEIEDVLYAFGATKLTERLKRLAYEWKSDAEQQAAGASSSGYGGSHPSED 206
           + ++VLYSLHAEIEDV+Y FGATK TER+KRL Y W +D E +AAG+SSS +GGS    +
Sbjct: 121 VGNSVLYSLHAEIEDVVYEFGATKPTERIKRLVYGWANDGEMKAAGSSSS-FGGSRRPGN 180

[Close]

BLAST of Cp4.1LG05g14860 vs. TAIR 10
Match: AT4G20970.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 110.2 bits (274), Expect = 2.1e-24
Identity = 73/184 (39.67%), Postives = 115/184 (62.50%), Query Frame = 0


Query: 10  NQQNGSTNKVERKVLEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTMLDQIEEAIKYIQSL 69
           +   G +  V+RK +EKNRR QMK LYS L SLLP + ST+ PLT+ DQ++EA  YI+ L
Sbjct: 5   HSNTGQSRSVDRKTVEKNRRMQMKSLYSELISLLPHHSSTE-PLTLPDQLDEAANYIKKL 64

Query: 70  TVKLDKVKEKKKRI--------LTSAPTRSPSSN--------LPELKIKEMGSAVEVVFT 129
            V ++K +E+K+ +        L S  + S SS+        LP+++I+E GS   +   
Sbjct: 65  QVNVEKKRERKRNLVATTTLEKLNSVGSSSVSSSVDVSVPRKLPKIEIQETGSIFHIFLV 124

Query: 130 TELNDRFLFYEIIRIFHEE-RVEIINATYSVLDDTVLYSLHAEIEDVLYAFGA-TKLTER 176
           T L  +F+F EIIR+  EE   EI +A YS++DD V ++LH ++E+  + +GA +++ ER
Sbjct: 125 TSLEHKFMFCEIIRVLTEELGAEITHAGYSIVDDAVFHTLHCKVEE--HDYGARSQIPER 184

[Close]

BLAST of Cp4.1LG05g14860 vs. TAIR 10
Match: AT1G10585.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 61.6 bits (148), Expect = 8.7e-10
Identity = 49/177 (27.68%), Postives = 92/177 (51.98%), Query Frame = 0


Query: 4   GREAAGNQQNGSTNKVERKVLEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTMLDQIEEAI 63
           GR     + N S+ + +R + EK+RR +MK L+S L+S + P +    P      I++A 
Sbjct: 2   GRAREIGEGNSSSLREQRNLREKDRRMRMKHLFSILSSHVSPTRKLPVP----HLIDQAT 61

Query: 64  KYIQSLTVKLDKVKEKKKRILTS--APTRSPSSNLPELKIKEMGSAVEVVFTTELN-DRF 123
            Y+  L   ++ +KEKK+ +L          S  LP+L I+   S +E+    +LN  R 
Sbjct: 62  SYMIQLKENVNYLKEKKRTLLQGELGNLYEGSFLLPKLSIRSRDSTIEMNLIMDLNMKRV 121

Query: 124 LFYEIIRIFHEERVEIINATYSVLDDTVLYSLHAEIEDVLYAFGATKLTERLKRLAY 178
           + +E++ IF EE  ++++A    L+D   Y++ A+          +++ ER++++ Y
Sbjct: 122 MLHELVSIFEEEGAQVMSANLQNLNDRTTYTIIAQAIISRIGIDPSRIEERVRKIIY 174

[Close]

BLAST of Cp4.1LG05g14860 vs. TAIR 10
Match: AT1G10586.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-09
Identity = 51/176 (28.98%), Postives = 96/176 (54.55%), Query Frame = 0


Query: 1   MERGREAAGNQQNGSTNKVERKVLEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTMLDQIE 60
           MER RE    + + S+ + +R + EK RR +MK L+S L+S + P +    P      I+
Sbjct: 1   MERAREI--GEGSASSLREQRNLREKERRMRMKHLFSILSSHVSPTRRLPVP----QLID 60

Query: 61  EAIKYIQSLTVKLDKVKEKKKRIL-TSAPTRSP-SSNLPELKIKEMGSAVEVVFTTELND 120
           +A+ Y+  L  K++ + E K+R+L      RS  SS LP+L I+ + S +E+    +LN 
Sbjct: 61  QAVSYMIQLKEKVNYLNEMKRRMLGGEVKNRSEGSSLLPKLSIRSLDSIIEMNLVMDLNM 120

Query: 121 R-FLFYEIIRIFHEERVEIINATYSVLDDTVLYSLHAEIEDVLYAFGATKLTERLK 174
           +  + ++++ +F EE  ++++A    L+D   Y++ A+          +++ ERL+
Sbjct: 121 KGVMLHKLVSVFEEEGAQVMSANLQNLNDRTFYTIIAQAIICRIGIDPSRIEERLR 170

[Close]

BLAST of Cp4.1LG05g14860 vs. TAIR 10
Match: AT5G51780.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 47.0 bits (110), Expect = 2.2e-05
Identity = 39/172 (22.67%), Postives = 86/172 (50.00%), Query Frame = 0


Query: 18  KVERKVLEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTMLDQIEEAIKYIQSLTVKLDKVK 77
           K+  +  E+ RR +M  LY++L SLLP +       T  DQ+ EA+ YI+ L  K+ ++ 
Sbjct: 3   KMMHRETERQRRQEMASLYASLRSLLPLHFIKGKRSTS-DQVNEAVNYIKYLQRKIKELS 62

Query: 78  EKKKRILTSAPTRSPSSNLPELK-------------IKEMGSAVEVVFTTE-LNDRFLFY 137
            ++  ++  +      S+  + K             +++    VE++ ++     +  F 
Sbjct: 63  VRRDDLMVLSRGSLLGSSNGDFKEDVEMISGKNHVVVRQCLVGVEIMLSSRCCGGQPRFS 122

Query: 138 EIIRIFHEERVEIINATYSVLDDTVLYSLHAEIEDVLYAFGATKLTERLKRL 176
            ++++  E  + ++N+  S++DD ++Y++ AE+ D+       +L +RL R+
Sbjct: 123 SVLQVLSEYGLCLLNSISSIVDDRLVYTIQAEVNDMALMIDLAELEKRLIRM 173

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g14860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JIJ7	3.0e-23	39.67	Transcription factor bHLH162 OS=Arabidopsis thaliana OX=3702 GN=BHLH162 PE=1 SV=...	[more]
F4I4E1	1.2e-08	27.68	Transcription factor bHLH167 OS=Arabidopsis thaliana OX=3702 GN=BHLH167 PE=2 SV=...	[more]
Q9XIJ1	1.6e-08	28.98	Transcription factor bHLH168 OS=Arabidopsis thaliana OX=3702 GN=BHLH168 PE=3 SV=...	[more]
Q9FLI1	3.1e-04	22.67	Transcription factor bHLH36 OS=Arabidopsis thaliana OX=3702 GN=BHLH36 PE=2 SV=1	[more]

BLAST of Cp4.1LG05g14860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023532358.1	4.25e-141	100.00	transcription factor bHLH162-like [Cucurbita pepo subsp. pepo]	[more]
KAG6604790.1	7.05e-140	99.06	Transcription factor basic helix-loop-helix 162, partial [Cucurbita argyrosperma...	[more]
XP_022948053.1	7.89e-137	97.18	transcription factor bHLH162-like [Cucurbita moschata]	[more]
KAG6604789.1	1.31e-79	63.96	Transcription factor basic helix-loop-helix 162, partial [Cucurbita argyrosperma...	[more]
XP_022948054.1	2.40e-74	65.48	transcription factor bHLH162-like [Cucurbita moschata]	[more]

BLAST of Cp4.1LG05g14860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G8B1	3.82e-137	97.18	transcription factor bHLH162-like OS=Cucurbita moschata OX=3662 GN=LOC111451747 ...	[more]
A0A6J1G8Q1	1.16e-74	65.48	transcription factor bHLH162-like OS=Cucurbita moschata OX=3662 GN=LOC111451748 ...	[more]
A0A6J1I4R7	1.90e-73	66.84	transcription factor bHLH162-like OS=Cucurbita maxima OX=3661 GN=LOC111469622 PE...	[more]
A0A6J1FXP8	2.23e-59	64.12	transcription factor bHLH162-like OS=Cucurbita moschata OX=3662 GN=LOC111448656 ...	[more]
A0A6J1JF05	2.19e-58	60.11	transcription factor bHLH162-like OS=Cucurbita maxima OX=3661 GN=LOC111483908 PE...	[more]

BLAST of Cp4.1LG05g14860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G20970.1	2.1e-24	39.67	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G10585.1	8.7e-10	27.68	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G10586.1	1.1e-09	28.98	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G51780.1	2.2e-05	22.67	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 59..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..213
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR13935:SF63	HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN	coord: 15..183
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 22..75 e-value: 4.1E-5 score: 33.0
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 19..69 e-value: 1.1E-7 score: 31.7
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 16..69 score: 12.309239
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 8..93 e-value: 1.0E-8 score: 36.9
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 17..86
IPR015660	Achaete-scute transcription factor-related	PANTHER	PTHR13935	ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED	coord: 15..183

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g14860.1	Cp4.1LG05g14860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:2000112	regulation of cellular macromolecule biosynthetic process
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity