Cp4.1LG05g13990 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAATACGAATTATGAAATAGAAAGGGTAAAAAGGGTTGAGTCAATTCAACCACCATAAAAGTACATTCAGGGCTCCATAGAAATGTGACCACAAATTACAATGAAAGGTGAAGATGGGGCCATAGAGGTCTTGGCTGTCGTCATGTCACGCATTGGCTAATAATAATATGAGTGCCACACCACACCATCCATATCCAAATCTCCAGTGATATATGTGATCCCCAACGACAAATGCCCAAACAGAGCTCACTCTTCCTTCAACAATGGCCGCCAAATTCCCTCTTTCTTCTTCCCTTACCACCATCAAATTCCCACTCCAACAAAACCCATCTCCCTTCTTCGCTCCTCTTCCCTGCACCACCTTCTCGCCGCCGCAGCCAAGGCCAACGCCAAGGGCTTCTCAGTTCAAACTTCTTGCAAATTCAGGTGAAGGCCCTTCTACTTTCGCTTGGATCTGCAGCTCACTCTTGCTGTTTTTCAGCTGCTGATGTTGCTTTTCAGGTGGTGGCGACGCCGAGGTCAAGAAGGGAGGGAAGAAGAAGTTCATAACCAAAGAACAAGAGCCAGAGCAGTAAGCAATTCTTTCCCTTTTCTGTATCAATTTGTAACGGTCTAAGCCCACTGCTAGCTTTCCCTTTCGGGTTTCTCCCAAGGTTTTGAAACCGATGTGGGATTCACACGATTGGAGTCGTTTTTCAAGTAGAAGAAGATATCATCAGGGCTTTAAGATGGAAATGTGGTTGAATTTGGTGCAGGTATTGGCAGACAGCAGGGGAGAGGGAAGGGGAAAATCCCATGAAGACTCCTCTTCCTTATATCATCATCTTTGGCATGTCGACGCCTTTCGTGATCTTAGCCATAGCTTTTGCCAATGGCTGGGTTAAAGTACCTGTGAGATGAATCTGATCAACCATGACAGTAACCTGATATCCTCCTGCTGCTTCTCTACAGCCCACCAAAAACCCACTGTTTATGCCTATTTTGAGTTGTAATGTTCTTCCAGAATCTAATACAAACTGTTGTAACTCGGTTCGATTTTGTTGTTAGTCTGTCACCTCATATGAGTTTGGATTCTTTTCCATTCCCATTTCAATACACCAAGCTGTTTTCTTGATCCTGTTGGAGCAAGAACTGTTGTGCCTCTGCAGAATGTTTGAGATATTAATTTCAAGAACACAAACAATTAAACAAAG AAATACGAATTATGAAATAGAAAGGGTAAAAAGGGTTGAGTCAATTCAACCACCATAAAAGTACATTCAGGGCTCCATAGAAATGTGACCACAAATTACAATGAAAGGTGAAGATGGGGCCATAGAGGTCTTGGCTGTCGTCATGTCACGCATTGGCTAATAATAATATGAGTGCCACACCACACCATCCATATCCAAATCTCCAGTGATATATGTGATCCCCAACGACAAATGCCCAAACAGAGCTCACTCTTCCTTCAACAATGGCCGCCAAATTCCCTCTTTCTTCTTCCCTTACCACCATCAAATTCCCACTCCAACAAAACCCATCTCCCTTCTTCGCTCCTCTTCCCTGCACCACCTTCTCGCCGCCGCAGCCAAGGCCAACGCCAAGGGCTTCTCAGTTCAAACTTCTTGCAAATTCAGGTGGTGGCGACGCCGAGGTCAAGAAGGGAGGGAAGAAGAAGTATTGGCAGACAGCAGGGGAGAGGGAAGGGGAAAATCCCATGAAGACTCCTCTTCCTTATATCATCATCTTTGGCATGTCGACGCCTTTCGTGATCTTAGCCATAGCTTTTGCCAATGGCTGGGTTAAAGTACCTGTGAGATGAATCTGATCAACCATGACAGTAACCTGATATCCTCCTGCTGCTTCTCTACAGCCCACCAAAAACCCACTGTTTATGCCTATTTTGAGTTGTAATGTTCTTCCAGAATCTAATACAAACTGTTGTAACTCGGTTCGATTTTGTTGTTAGTCTGTCACCTCATATGAGTTTGGATTCTTTTCCATTCCCATTTCAATACACCAAGCTGTTTTCTTGATCCTGTTGGAGCAAGAACTGTTGTGCCTCTGCAGAATGTTTGAGATATTAATTTCAAGAACACAAACAATTAAACAAAG ATGGCCGCCAAATTCCCTCTTTCTTCTTCCCTTACCACCATCAAATTCCCACTCCAACAAAACCCATCTCCCTTCTTCGCTCCTCTTCCCTGCACCACCTTCTCGCCGCCGCAGCCAAGGCCAACGCCAAGGGCTTCTCAGTTCAAACTTCTTGCAAATTCAGGTGGTGGCGACGCCGAGGTCAAGAAGGGAGGGAAGAAGAAGTATTGGCAGACAGCAGGGGAGAGGGAAGGGGAAAATCCCATGAAGACTCCTCTTCCTTATATCATCATCTTTGGCATGTCGACGCCTTTCGTGATCTTAGCCATAGCTTTTGCCAATGGCTGGGTTAAAGTACCTGTGAGATGA MAAKFPLSSSLTTIKFPLQQNPSPFFAPLPCTTFSPPQPRPTPRASQFKLLANSGGGDAEVKKGGKKKYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWVKVPVR Homology
BLAST of Cp4.1LG05g13990 vs. NCBI nr
Match: KAG7026995.1 (hypothetical protein SDJN02_11003 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 229 bits (585), Expect = 7.74e-76 Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = 0
BLAST of Cp4.1LG05g13990 vs. NCBI nr
Match: XP_023534591.1 (uncharacterized protein LOC111796124 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 224 bits (572), Expect = 1.03e-73 Identity = 115/125 (92.00%), Postives = 115/125 (92.00%), Query Frame = 0
BLAST of Cp4.1LG05g13990 vs. NCBI nr
Match: XP_022947537.1 (uncharacterized protein LOC111451373 [Cucurbita moschata] >KAG6604915.1 hypothetical protein SDJN03_02232, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 221 bits (564), Expect = 1.72e-72 Identity = 114/125 (91.20%), Postives = 114/125 (91.20%), Query Frame = 0
BLAST of Cp4.1LG05g13990 vs. NCBI nr
Match: XP_022971133.1 (uncharacterized protein LOC111469898 [Cucurbita maxima]) HSP 1 Score: 211 bits (536), Expect = 3.00e-68 Identity = 110/125 (88.00%), Postives = 112/125 (89.60%), Query Frame = 0
BLAST of Cp4.1LG05g13990 vs. NCBI nr
Match: XP_038902667.1 (uncharacterized protein LOC120089303 [Benincasa hispida]) HSP 1 Score: 176 bits (446), Expect = 1.48e-54 Identity = 98/125 (78.40%), Postives = 103/125 (82.40%), Query Frame = 0
BLAST of Cp4.1LG05g13990 vs. ExPASy TrEMBL
Match: A0A6J1G6R0 (uncharacterized protein LOC111451373 OS=Cucurbita moschata OX=3662 GN=LOC111451373 PE=4 SV=1) HSP 1 Score: 221 bits (564), Expect = 8.31e-73 Identity = 114/125 (91.20%), Postives = 114/125 (91.20%), Query Frame = 0
BLAST of Cp4.1LG05g13990 vs. ExPASy TrEMBL
Match: A0A6J1I5Y3 (uncharacterized protein LOC111469898 OS=Cucurbita maxima OX=3661 GN=LOC111469898 PE=4 SV=1) HSP 1 Score: 211 bits (536), Expect = 1.45e-68 Identity = 110/125 (88.00%), Postives = 112/125 (89.60%), Query Frame = 0
BLAST of Cp4.1LG05g13990 vs. ExPASy TrEMBL
Match: A0A0A0KA68 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G112440 PE=4 SV=1) HSP 1 Score: 176 bits (446), Expect = 7.63e-55 Identity = 101/126 (80.16%), Postives = 106/126 (84.13%), Query Frame = 0
BLAST of Cp4.1LG05g13990 vs. ExPASy TrEMBL
Match: A0A6J1CI22 (uncharacterized protein LOC111011130 OS=Momordica charantia OX=3673 GN=LOC111011130 PE=4 SV=1) HSP 1 Score: 176 bits (445), Expect = 1.12e-54 Identity = 97/126 (76.98%), Postives = 103/126 (81.75%), Query Frame = 0
BLAST of Cp4.1LG05g13990 vs. ExPASy TrEMBL
Match: A0A5D3CJG8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G001450 PE=4 SV=1) HSP 1 Score: 176 bits (445), Expect = 4.39e-54 Identity = 100/126 (79.37%), Postives = 106/126 (84.13%), Query Frame = 0
BLAST of Cp4.1LG05g13990 vs. TAIR 10
Match: AT2G05310.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13500.1); Has 50 Blast hits to 50 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 117.9 bits (294), Expect = 5.5e-27 Identity = 63/92 (68.48%), Postives = 66/92 (71.74%), Query Frame = 0
BLAST of Cp4.1LG05g13990 vs. TAIR 10
Match: AT4G13500.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G05310.1); Has 50 Blast hits to 50 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 115.5 bits (288), Expect = 2.7e-26 Identity = 73/129 (56.59%), Postives = 80/129 (62.02%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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