Cp4.1LG05g13990 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG05g13990
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG05: 9779747 .. 9780939 (-)
RNA-Seq ExpressionCp4.1LG05g13990
SyntenyCp4.1LG05g13990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATACGAATTATGAAATAGAAAGGGTAAAAAGGGTTGAGTCAATTCAACCACCATAAAAGTACATTCAGGGCTCCATAGAAATGTGACCACAAATTACAATGAAAGGTGAAGATGGGGCCATAGAGGTCTTGGCTGTCGTCATGTCACGCATTGGCTAATAATAATATGAGTGCCACACCACACCATCCATATCCAAATCTCCAGTGATATATGTGATCCCCAACGACAAATGCCCAAACAGAGCTCACTCTTCCTTCAACAATGGCCGCCAAATTCCCTCTTTCTTCTTCCCTTACCACCATCAAATTCCCACTCCAACAAAACCCATCTCCCTTCTTCGCTCCTCTTCCCTGCACCACCTTCTCGCCGCCGCAGCCAAGGCCAACGCCAAGGGCTTCTCAGTTCAAACTTCTTGCAAATTCAGGTGAAGGCCCTTCTACTTTCGCTTGGATCTGCAGCTCACTCTTGCTGTTTTTCAGCTGCTGATGTTGCTTTTCAGGTGGTGGCGACGCCGAGGTCAAGAAGGGAGGGAAGAAGAAGTTCATAACCAAAGAACAAGAGCCAGAGCAGTAAGCAATTCTTTCCCTTTTCTGTATCAATTTGTAACGGTCTAAGCCCACTGCTAGCTTTCCCTTTCGGGTTTCTCCCAAGGTTTTGAAACCGATGTGGGATTCACACGATTGGAGTCGTTTTTCAAGTAGAAGAAGATATCATCAGGGCTTTAAGATGGAAATGTGGTTGAATTTGGTGCAGGTATTGGCAGACAGCAGGGGAGAGGGAAGGGGAAAATCCCATGAAGACTCCTCTTCCTTATATCATCATCTTTGGCATGTCGACGCCTTTCGTGATCTTAGCCATAGCTTTTGCCAATGGCTGGGTTAAAGTACCTGTGAGATGAATCTGATCAACCATGACAGTAACCTGATATCCTCCTGCTGCTTCTCTACAGCCCACCAAAAACCCACTGTTTATGCCTATTTTGAGTTGTAATGTTCTTCCAGAATCTAATACAAACTGTTGTAACTCGGTTCGATTTTGTTGTTAGTCTGTCACCTCATATGAGTTTGGATTCTTTTCCATTCCCATTTCAATACACCAAGCTGTTTTCTTGATCCTGTTGGAGCAAGAACTGTTGTGCCTCTGCAGAATGTTTGAGATATTAATTTCAAGAACACAAACAATTAAACAAAG

mRNA sequence

AAATACGAATTATGAAATAGAAAGGGTAAAAAGGGTTGAGTCAATTCAACCACCATAAAAGTACATTCAGGGCTCCATAGAAATGTGACCACAAATTACAATGAAAGGTGAAGATGGGGCCATAGAGGTCTTGGCTGTCGTCATGTCACGCATTGGCTAATAATAATATGAGTGCCACACCACACCATCCATATCCAAATCTCCAGTGATATATGTGATCCCCAACGACAAATGCCCAAACAGAGCTCACTCTTCCTTCAACAATGGCCGCCAAATTCCCTCTTTCTTCTTCCCTTACCACCATCAAATTCCCACTCCAACAAAACCCATCTCCCTTCTTCGCTCCTCTTCCCTGCACCACCTTCTCGCCGCCGCAGCCAAGGCCAACGCCAAGGGCTTCTCAGTTCAAACTTCTTGCAAATTCAGGTGGTGGCGACGCCGAGGTCAAGAAGGGAGGGAAGAAGAAGTATTGGCAGACAGCAGGGGAGAGGGAAGGGGAAAATCCCATGAAGACTCCTCTTCCTTATATCATCATCTTTGGCATGTCGACGCCTTTCGTGATCTTAGCCATAGCTTTTGCCAATGGCTGGGTTAAAGTACCTGTGAGATGAATCTGATCAACCATGACAGTAACCTGATATCCTCCTGCTGCTTCTCTACAGCCCACCAAAAACCCACTGTTTATGCCTATTTTGAGTTGTAATGTTCTTCCAGAATCTAATACAAACTGTTGTAACTCGGTTCGATTTTGTTGTTAGTCTGTCACCTCATATGAGTTTGGATTCTTTTCCATTCCCATTTCAATACACCAAGCTGTTTTCTTGATCCTGTTGGAGCAAGAACTGTTGTGCCTCTGCAGAATGTTTGAGATATTAATTTCAAGAACACAAACAATTAAACAAAG

Coding sequence (CDS)

ATGGCCGCCAAATTCCCTCTTTCTTCTTCCCTTACCACCATCAAATTCCCACTCCAACAAAACCCATCTCCCTTCTTCGCTCCTCTTCCCTGCACCACCTTCTCGCCGCCGCAGCCAAGGCCAACGCCAAGGGCTTCTCAGTTCAAACTTCTTGCAAATTCAGGTGGTGGCGACGCCGAGGTCAAGAAGGGAGGGAAGAAGAAGTATTGGCAGACAGCAGGGGAGAGGGAAGGGGAAAATCCCATGAAGACTCCTCTTCCTTATATCATCATCTTTGGCATGTCGACGCCTTTCGTGATCTTAGCCATAGCTTTTGCCAATGGCTGGGTTAAAGTACCTGTGAGATGA

Protein sequence

MAAKFPLSSSLTTIKFPLQQNPSPFFAPLPCTTFSPPQPRPTPRASQFKLLANSGGGDAEVKKGGKKKYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWVKVPVR
Homology
BLAST of Cp4.1LG05g13990 vs. NCBI nr
Match: KAG7026995.1 (hypothetical protein SDJN02_11003 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 229 bits (585), Expect = 7.74e-76
Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = 0

Query: 1   MAAKFPLSSSLTTIKFPLQQNPSPFFAPLPCTTFSPPQPRPTPRASQFKLLANSGGGDAE 60
           MAAKFPLSSSLTTIKF LQQNPSPFFAPLPCTTFSPPQPRPTPRASQFKLLANSGGGDAE
Sbjct: 1   MAAKFPLSSSLTTIKFSLQQNPSPFFAPLPCTTFSPPQPRPTPRASQFKLLANSGGGDAE 60

Query: 61  VKKGGKKKYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWVKVPVR 115
           VKKGGKKKYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWVKVPVR
Sbjct: 61  VKKGGKKKYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWVKVPVR 115

BLAST of Cp4.1LG05g13990 vs. NCBI nr
Match: XP_023534591.1 (uncharacterized protein LOC111796124 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 224 bits (572), Expect = 1.03e-73
Identity = 115/125 (92.00%), Postives = 115/125 (92.00%), Query Frame = 0

Query: 1   MAAKFPLSSSLTTIKFPLQQNPSPFFAPLPCTTFSPPQPRPTPRASQFKLLANSGGGDAE 60
           MAAKFPLSSSLTTIKFPLQQNPSPFFAPLPCTTFSPPQPRPTPRASQFKLLANSGGGDAE
Sbjct: 1   MAAKFPLSSSLTTIKFPLQQNPSPFFAPLPCTTFSPPQPRPTPRASQFKLLANSGGGDAE 60

Query: 61  VKKGGKKK----------YWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWV 115
           VKKGGKKK          YWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWV
Sbjct: 61  VKKGGKKKFITKEQEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWV 120

BLAST of Cp4.1LG05g13990 vs. NCBI nr
Match: XP_022947537.1 (uncharacterized protein LOC111451373 [Cucurbita moschata] >KAG6604915.1 hypothetical protein SDJN03_02232, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 221 bits (564), Expect = 1.72e-72
Identity = 114/125 (91.20%), Postives = 114/125 (91.20%), Query Frame = 0

Query: 1   MAAKFPLSSSLTTIKFPLQQNPSPFFAPLPCTTFSPPQPRPTPRASQFKLLANSGGGDAE 60
           MAAKFPLSSSLTTIKF LQQNPSPFFAPLPCTTFSPPQPRPTPRASQFKLLANSGGGDAE
Sbjct: 1   MAAKFPLSSSLTTIKFSLQQNPSPFFAPLPCTTFSPPQPRPTPRASQFKLLANSGGGDAE 60

Query: 61  VKKGGKKK----------YWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWV 115
           VKKGGKKK          YWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWV
Sbjct: 61  VKKGGKKKFITKEQEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWV 120

BLAST of Cp4.1LG05g13990 vs. NCBI nr
Match: XP_022971133.1 (uncharacterized protein LOC111469898 [Cucurbita maxima])

HSP 1 Score: 211 bits (536), Expect = 3.00e-68
Identity = 110/125 (88.00%), Postives = 112/125 (89.60%), Query Frame = 0

Query: 1   MAAKFPLSSSLTTIKFPLQQNPSPFFAPLPCTTFSPPQPRPTPRASQFKLLANSGGGDAE 60
           MAAKFPLSSSLTTIKFPLQQNPSPFF PLPCTTFSPP+P+P  RASQFKLLANSGGGDAE
Sbjct: 1   MAAKFPLSSSLTTIKFPLQQNPSPFFPPLPCTTFSPPKPKP--RASQFKLLANSGGGDAE 60

Query: 61  VKKGGKKK----------YWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWV 115
           VKKGGKKK          YWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWV
Sbjct: 61  VKKGGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWV 120

BLAST of Cp4.1LG05g13990 vs. NCBI nr
Match: XP_038902667.1 (uncharacterized protein LOC120089303 [Benincasa hispida])

HSP 1 Score: 176 bits (446), Expect = 1.48e-54
Identity = 98/125 (78.40%), Postives = 103/125 (82.40%), Query Frame = 0

Query: 1   MAAKFPLSSSLTTIKFPLQQNPSPFFAPLPCTTFSPPQPRPTPRASQFKLLANSGGGDAE 60
           MA K PLSSSLT IKFPLQQ+PS FF+PLPC  FS P+PRP P  S+FKLLAN GGGDAE
Sbjct: 1   MAVKVPLSSSLT-IKFPLQQSPSSFFSPLPCP-FSLPKPRPMP--SRFKLLANLGGGDAE 60

Query: 61  VKKGGKKK----------YWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWV 115
           +KKG KKK          YWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWV
Sbjct: 61  IKKGAKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWV 120

BLAST of Cp4.1LG05g13990 vs. ExPASy TrEMBL
Match: A0A6J1G6R0 (uncharacterized protein LOC111451373 OS=Cucurbita moschata OX=3662 GN=LOC111451373 PE=4 SV=1)

HSP 1 Score: 221 bits (564), Expect = 8.31e-73
Identity = 114/125 (91.20%), Postives = 114/125 (91.20%), Query Frame = 0

Query: 1   MAAKFPLSSSLTTIKFPLQQNPSPFFAPLPCTTFSPPQPRPTPRASQFKLLANSGGGDAE 60
           MAAKFPLSSSLTTIKF LQQNPSPFFAPLPCTTFSPPQPRPTPRASQFKLLANSGGGDAE
Sbjct: 1   MAAKFPLSSSLTTIKFSLQQNPSPFFAPLPCTTFSPPQPRPTPRASQFKLLANSGGGDAE 60

Query: 61  VKKGGKKK----------YWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWV 115
           VKKGGKKK          YWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWV
Sbjct: 61  VKKGGKKKFITKEQEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWV 120

BLAST of Cp4.1LG05g13990 vs. ExPASy TrEMBL
Match: A0A6J1I5Y3 (uncharacterized protein LOC111469898 OS=Cucurbita maxima OX=3661 GN=LOC111469898 PE=4 SV=1)

HSP 1 Score: 211 bits (536), Expect = 1.45e-68
Identity = 110/125 (88.00%), Postives = 112/125 (89.60%), Query Frame = 0

Query: 1   MAAKFPLSSSLTTIKFPLQQNPSPFFAPLPCTTFSPPQPRPTPRASQFKLLANSGGGDAE 60
           MAAKFPLSSSLTTIKFPLQQNPSPFF PLPCTTFSPP+P+P  RASQFKLLANSGGGDAE
Sbjct: 1   MAAKFPLSSSLTTIKFPLQQNPSPFFPPLPCTTFSPPKPKP--RASQFKLLANSGGGDAE 60

Query: 61  VKKGGKKK----------YWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWV 115
           VKKGGKKK          YWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWV
Sbjct: 61  VKKGGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWV 120

BLAST of Cp4.1LG05g13990 vs. ExPASy TrEMBL
Match: A0A0A0KA68 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G112440 PE=4 SV=1)

HSP 1 Score: 176 bits (446), Expect = 7.63e-55
Identity = 101/126 (80.16%), Postives = 106/126 (84.13%), Query Frame = 0

Query: 1   MAAKFPLSSSLTTIKFPLQQNPSP-FFAPLPCTTFSPPQPRPTPRASQFKLLANSGGGDA 60
           MAAKFPLSSSLT IKFPLQQNPS  FF PLP + FS P+ RPTP +S+FKLLAN GGGDA
Sbjct: 1   MAAKFPLSSSLT-IKFPLQQNPSSSFFPPLP-SPFSSPKLRPTP-SSRFKLLANLGGGDA 60

Query: 61  EVKKGGKKK----------YWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGW 115
           E+KKGGKKK          YWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGW
Sbjct: 61  EIKKGGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGW 120

BLAST of Cp4.1LG05g13990 vs. ExPASy TrEMBL
Match: A0A6J1CI22 (uncharacterized protein LOC111011130 OS=Momordica charantia OX=3673 GN=LOC111011130 PE=4 SV=1)

HSP 1 Score: 176 bits (445), Expect = 1.12e-54
Identity = 97/126 (76.98%), Postives = 103/126 (81.75%), Query Frame = 0

Query: 1   MAAKFPLSSSLTTIKFPLQQNPSPFFAPLPCTTFSPPQPRPTPRASQFKLLANSGGGDAE 60
           MAAKF LSSSLT IKFPLQQNPS FFAPLP +  S P P+P  RAS+FKL+AN GGGDAE
Sbjct: 1   MAAKFALSSSLT-IKFPLQQNPSSFFAPLP-SGLSSPNPKPKSRASRFKLVANLGGGDAE 60

Query: 61  VKKGGKKK-----------YWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGW 115
           +KKGG KK           YWQ+AGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGW
Sbjct: 61  IKKGGGKKKFITKEEEPEQYWQSAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGW 120

BLAST of Cp4.1LG05g13990 vs. ExPASy TrEMBL
Match: A0A5D3CJG8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G001450 PE=4 SV=1)

HSP 1 Score: 176 bits (445), Expect = 4.39e-54
Identity = 100/126 (79.37%), Postives = 106/126 (84.13%), Query Frame = 0

Query: 1   MAAKFPLSSSLTTIKFPLQQNPSP-FFAPLPCTTFSPPQPRPTPRASQFKLLANSGGGDA 60
           MAAKFPLSSSLT +KFPLQQNPS  FF PLP + FS P+ RPTP +S+FKLLAN GGGDA
Sbjct: 45  MAAKFPLSSSLT-VKFPLQQNPSSSFFPPLP-SPFSSPKLRPTP-SSRFKLLANLGGGDA 104

Query: 61  EVKKGGKKK----------YWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGW 115
           E+KKGGKKK          YWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGW
Sbjct: 105 EIKKGGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGW 164

BLAST of Cp4.1LG05g13990 vs. TAIR 10
Match: AT2G05310.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13500.1); Has 50 Blast hits to 50 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 117.9 bits (294), Expect = 5.5e-27
Identity = 63/92 (68.48%), Postives = 66/92 (71.74%), Query Frame = 0

Query: 34  FSPPQPRPTPRASQFKLLANSGGGDAEVKKGGKKK----------YWQTAGEREGENPMK 93
           F PP P   P   QFKL A  GGGD EVK   KKK          YWQ+ GEREGENPMK
Sbjct: 37  FCPPSPLGFP---QFKLHAKLGGGDGEVKPKDKKKFITKDEEPEQYWQSVGEREGENPMK 96

Query: 94  TPLPYIIIFGMSTPFVILAIAFANGWVKVPVR 116
           TPLPYIIIFGMSTPFVILAIAFANGW+KVP+R
Sbjct: 97  TPLPYIIIFGMSTPFVILAIAFANGWIKVPIR 125

BLAST of Cp4.1LG05g13990 vs. TAIR 10
Match: AT4G13500.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G05310.1); Has 50 Blast hits to 50 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 115.5 bits (288), Expect = 2.7e-26
Identity = 73/129 (56.59%), Postives = 80/129 (62.02%), Query Frame = 0

Query: 1   MAAKFPLSSSLTTIKFPLQQNPS----PFFAPLPCTTFSPPQPRPTPRASQFKLLANSGG 60
           MAAKF +SSS  + +       S         LP   F PP P   P   +FKL A  GG
Sbjct: 1   MAAKFRISSSSFSHRASDSSTSSSSSYSSLLALP-QFFCPPSPLGFP---EFKLHAKLGG 60

Query: 61  GDAEVKKGGKKK----------YWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFA 116
           GD EVK   KKK          YWQ+ GEREGENPMKTPLPYIIIFGMSTPFVILAIAFA
Sbjct: 61  GDGEVKPKDKKKFITKEEEPEQYWQSVGEREGENPMKTPLPYIIIFGMSTPFVILAIAFA 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG7026995.17.74e-7699.13hypothetical protein SDJN02_11003 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023534591.11.03e-7392.00uncharacterized protein LOC111796124 [Cucurbita pepo subsp. pepo][more]
XP_022947537.11.72e-7291.20uncharacterized protein LOC111451373 [Cucurbita moschata] >KAG6604915.1 hypothet... [more]
XP_022971133.13.00e-6888.00uncharacterized protein LOC111469898 [Cucurbita maxima][more]
XP_038902667.11.48e-5478.40uncharacterized protein LOC120089303 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
A0A6J1G6R08.31e-7391.20uncharacterized protein LOC111451373 OS=Cucurbita moschata OX=3662 GN=LOC1114513... [more]
A0A6J1I5Y31.45e-6888.00uncharacterized protein LOC111469898 OS=Cucurbita maxima OX=3661 GN=LOC111469898... [more]
A0A0A0KA687.63e-5580.16Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G112440 PE=4 SV=1[more]
A0A6J1CI221.12e-5476.98uncharacterized protein LOC111011130 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
A0A5D3CJG84.39e-5479.37Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
AT2G05310.15.5e-2768.48unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT4G13500.12.7e-2656.59unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..74
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..78
NoneNo IPR availablePANTHERPTHR36343EXPRESSED PROTEINcoord: 1..115

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g13990.1Cp4.1LG05g13990.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane