Cp4.1LG05g13330 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG05g13330
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionProtein FAR1-RELATED SEQUENCE
LocationCp4.1LG05: 9358707 .. 9362389 (+)
RNA-Seq ExpressionCp4.1LG05g13330
SyntenyCp4.1LG05g13330
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGGCCTGGCACGTGAGTGTTTAGGCCCATCTCAAAAAGAAAATAATCTGACATGAAAATAAAATTTAATAAACAGTGGCAGTGATCGGAGCCCTAGAAAGTGCCGGCGAAGGGGAATCATCCACCGGCACCGTCCCTGTCACTGGTACTCTCCTCCCGTCTGAGCGATCGTGTTTCAATCTTAATGAATTAACGATTTGAACTGTTCTTCTTTCTTCTCAATTGCCTCAAGTAGTTTCAGTTTCCTCTCCGATGTTTTTAGCTTATGATTTTGCGAATTTTACTTTCTTCTCGAATATGGAAAGTTTAGGTCTCTCAATTACTTGTACAAATAAACGAGATAGTTTTTTATATCTTTGTGTTATCGGTATATTCGAGAAAATTGAGGTTCGTCCATTTCTGTATAGCCGCGATTATATCTCTCGAAGGATCGCGATTCAATCTCATTCTACTTTTGAAGCTGAATTTAGAAAAATGAGTTAATGAGGCTGCGACATTTGAAGAATTTGAGTCTTGTTGGGAAGCTCTTCTGAATAAACATTACATTATGGACAATGAATGGCTTCAGTTAATGTATTGTGCTGGACAACAGTGGGGGTACCTGTTTATGTGAGAGACACTTTCTTTGGAGAGTAGGTTTGAATTTGTTTTTTTGATGGATATGTTACTGCATCCACCACGTTACAGATGTTGGTTAGACAGTATGAAAAGGGCCATGGAAAATTGGTATGGAAAAGAATTAAAAGCTGATTATGATCCAACTAACTCTATGCTAGTTTTGAAGACAACAGGCTGCAGATCCATATTCAAGGAGGATATTCAGAAAGTTCCAGGAGGAATTGGTAGAAACTCTTGCCAATCCTGCAACCAAAATTGATGATACAGGAACCGTGCCAAGTATCGAAATTTGGGGATGATCATAAAGCACATGCGGTTAGTTGAGTTGAAAGCTAATTGCAGCTATCAATTGTTTGAATATCTGGGAATAATTTGCAGACATATATTATCAGTTTTCCTTCTCAATATGTATTGAATCGGTGGACTAGAAATGACAGAAATGGAGATGCAATAGATGACCATAATTCTGAATTTCCTATTGAATCTAGAGATTCTTTGACTGTTAGGTACAATAATCTTCCTCAAGAAGCAATCAAGTGTAACAGTTCAACCTTACCGCTAGCAGATATTAACCGTTTAAGCCCGTTATATATCACCGTCCTCTGTTAGGGAGAGGTTTCCACACCCTTATAAGGAATGTTTCGTTATCCTCTCCAACCGTTGTGGGATCTCACATCAAATGTGTTGAGGAAGGAGTAAAGTCAATTCATATTCATAACGTGGCTATGGATATGGATGCCTTAAAAGAGGCCTCCAGAAAGGTTGCTGCTGTGAAGAATCGTGGCCCTAGAGCTTCGAATGGTGATATCATGGCCAATGGAGTTGTTGATCAATGGTTGCAACAGAAGAGGATCAGGCAGCAACCTATGGATCAGTGGTTAGTCTCTTTAATTTGCAGTCTTAAAATCACTGAAATATATCATTATTTATTGATGATCCTCCTCCTCTTCCCGTGAGTGGAGTCCAGAAATTGTGCATTGTGCTTGAAAGACATCTAAAGCATTAGGGTAAAACACTAAATTTTTGTAACGGCCAGTAGATATTGTCCTCTCTGGACTTTTCCTTTCGGGCTTCCCCCTCAAGGCTTTAAAACGCGTCTGCTAGGGAAAGGTTTCCACACTCTTATAAGGTGTTTCGTTCTCCTCCCCCACCAATGCGGGATATCACAATCCACCCCCTTCAGGGCCCAGCGTCCTTACTGGCACACTGCCTCGTGTCTACCCCCTTTCGGGGAAGAGCCTCCTCGCTGGCATATCACCCAGTGTCTGGCTCTGATACCATTTGTAACGGCCCAAGCCCACCGCTAGCAGATATTGTCATTTTTTTGGCTTTCCTTTTTGGGCTTCCCCTCAAGGCTTTAAAACGCGTCTACTAGGGAAAGATTTCCACACTCTTATAAAGGATGTTTCGTTCTCCTCCCCAACCAACCAATGTTGTTTTAGATTGAGTGGTAGGCTTTACTTTTGAATCAATTGAACACGGAGAGTTGGAAGATTCATTAGCTAATGTCAATAATAACGCTTAGGGGCTTGGGCCACATAGAACTTACTGAGTTTTTCTTGTCCTATACCTGTACTTTGGTTGGATGGCTTTCATTGTCTATACACTTTCAGATAGGTATGCCGGTTTTTAACTTAATTATTTCTGAACTTGACTGTTCTTTGATGCATCTGTTGTGCTGTATATGATGAATTGTCAAATAGATAATGCTCGTGCTTGATATCGAAGCGAGTCGATAGATTTGTCAAGGCTTCAGTTAATTAGATTCAGGTTGGTAGCGGTCATGTGGTCGACTTGTTGGGTGAATTAAATTCGATGAATTGTCCAAATACGAGCCAACTGTTCGTCTCTGCAGTTTTCATATCTACTTTTCTAGTGAGATTGAAAAGAGAAAAGGCTTGAAATAACCTATCATCAATTTTGTGGATGTAACATTTGAGAAGATAATGAAGTTTTCAGGACATAACGTGCTTTCTTATTTGTTCTCTGTTTCTGTTGGTTCTTTTCCCAGGAATAGAAGGAGAAGAAAATTCATGATCTTGGAAAAAATTGATCAACGTTGTGAAGTGTATAGAGCAAATCTCCTACCTGTTCTTAGAGACGTGGAAGAGCAGAAGTTGAATCTATCAGTGATGGTCCAAAATGGGAGGAGCACAAACCCACCGCTAACCGATATTATCCGTTTTGGCCCGTTACATATCGCCGTCAGCCTCACGATTTTTAAACACGTCTACTAGAGAGAGGTGGTTTTCACATCCTTACAAAGAATGTTTCGTTTCCCTCTCCAATAGATGTAGGATCACACAATCCATTACCTTGGAGGTCAATGTTGTCGTTGGAACACCACCTGGTGTTCGACTCTGATATTATTTGTAACAGCCCAAGCTTACTGCCAACAGATATTGTTCTCTTTGGAGTTTCCTTCAAAGTTCTAAAACACATCTGTTAGGTAGAGGTTTCCATACCCTTAAGCATTGTTTTATTTCTCCCTCCAACTGACTTAGAGCTCACTAATTATGATTGTCATCATCTCTTGAGTTGATACCATTCATCCACCGTGTTCATCTTATTTAATGGCTCGTCTTTCCAAAGAATAAGAATGACGAATCAACAGAACAAGTGACCGGTGGCATCGAAAGGAACGGTCAGGGTGTCTACTGTCATGTAAGTGCTCTAAATTCTAAATGTTGTTGTGTAGAAAAAAATGCTATACCTTAACCTATTCGAGTGTGACAAAGAGGTGGTTGGATCTAGGATGAAGCATCATGAACATCTGGCATTAAAGCCTGCCTTTGGACGCTATTGACATCCTGATGACTCGACAACTTCTTTGGGTGATTCTTGTGAAGTAAATACAATGTATTGTTAAAAGTTCTTCAATTTTGTAGGAATATCATTTAATATTAGTTAGGTCCAATGAAAAAAAGCTCTATTTTTCTCGATTGCATGGCTCTGGTACCATATGTAACCGCTTAAGCTCACCACTAGTAAATATTATCCGTTTCGGCCCATTATGTATCGTCGTTTTGGCCCGTTATGTATTGTCGTCAGTCTCACGGTTTTAA

mRNA sequence

TGGGCCTGGCACGTGAGTGTTTAGGCCCATCTCAAAAAGAAAATAATCTGACATGAAAATAAAATTTAATAAACAGTGGCAGTGATCGGAGCCCTAGAAAGTGCCGGCGAAGGGGAATCATCCACCGGCACCGTCCCTGTCACTGCCGCGATTATATCTCTCGAAGGATCGCGATTCAATCTCATTCTACTTTTGAAGCTGAATTTAGAAAAATGAGTTAATGAGGCTGCGACATTTGAAGAATTTGAGTCTTGTTGGGAAGCTCTTCTGAATAAACATTACATTATGGACAATGAATGGCTTCAGTTAATGTATTGTGCTGGACAACAGTGGGGGTACCTGTTTATGTGAGAGACACTTTCTTTGGAGAGTAGGTTTGAATTTGTTTTTTTGATGGATATGTTACTGCATCCACCACGTTACAGATGTTGGTTAGACAGTATGAAAAGGGCCATGGAAAATTGGTATGGAAAAGAATTAAAAGCTGATTATGATCCAACTAACTCTATGCTAGTTTTGAAGACAACAGGCTGCAGATCCATATTCAAGGAGGATATTCAGAAAGTTCCAGGAGGAATTGGTAGAAACTCTTGCCAATCCTGCAACCAAAATTGATGATACAGGAACCGTGCCAAGTATCGAAATTTGGGGATGATCATAAAGCACATGCGGTTAGTTGAGTTGAAAGCTAATTGCAGCTATCAATTGTTTGAATATCTGGGAATAATTTGCAGACATATATTATCAGTTTTCCTTCTCAATATGTATTGAATCGGTGGACTAGAAATGACAGAAATGGAGATGCAATAGATGACCATAATTCTGAATTTCCTATTGAATCTAGAGATTCTTTGACTGTTAGGTACAATAATCTTCCTCAAGAAGCAATCAAGTGTAACAGTTCAACCTTACCGCTAGCAGATATTAACCGTTTAAGCCCGTTATATATCACCGTCCTCTGTTAGGGAGAGGTTTCCACACCCTTATAAGGAATGTTTCGTTATCCTCTCCAACCGTTGTGGGATCTCACATCAAATGTGTTGAGGAAGGAGTAAAGTCAATTCATATTCATAACGTGGCTATGGATATGGATGCCTTAAAAGAGGCCTCCAGAAAGGTTGCTGCTGTGAAGAATCGTGGCCCTAGAGCTTCGAATGGTGATATCATGGCCAATGGAGTTGTTGATCAATGGTTGCAACAGAAGAGGATCAGGCAGCAACCTATGGATCAGTGGGGCTTGGGCCACATAGAACTTACTGAGTTTTTCTTGTCCTATACCTGTACTTTGGTTGGATGGCTTTCATTGTCTATACACTTTCAGATAGGAATAGAAGGAGAAGAAAATTCATGATCTTGGAAAAAATTGATCAACGTTGTGAAGTGTATAGAGCAAATCTCCTACCTGTTCTTAGAGACGTGGAAGAGCAGAAGTTGAATCTATCAGTGATGGTCCAAAATGGGAGGAGCACAAACCCACCGCTAACCGATATTATCCGTTTTGGCCCGTTACATATCGCCGTCAGCCTCACGATTTTTAAACACGTCTACTAGAGAGAGGTGGTTTTCACATCCTTACAAAGAATGTTTCGTTTCCCTCTCCAATAGATGTAGGATCACACAATCCATTACCTTGGAGGTCAATGTTGTCGTTGGAACACCACCTGGTGTTCGACTCTGATATTATTTGTAACAGCCCAAGCTTACTGCCAACAGATATTGTTCTCTTTGGAGTTTCCTTCAAAGTTCTAAAACACATCTGTTAGGTAGAGGTTTCCATACCCTTAAGCATTGTTTTATTTCTCCCTCCAACTGACTTAGAGCTCACTAATTATGATTGTCATCATCTCTTGAGTTGATACCATTCATCCACCGTGTTCATCTTATTTAATGGCTCGTCTTTCCAAAGAATAAGAATGACGAATCAACAGAACAAGTGACCGGTGGCATCGAAAGGAACGGTCAGGGTGTCTACTGTCATGATGAAGCATCATGAACATCTGGCATTAAAGCCTGCCTTTGGACGCTATTGACATCCTGATGACTCGACAACTTCTTTGGGTGATTCTTGTGAAGTAAATACAATGTATTGTTAAAAGTTCTTCAATTTTGTAGGAATATCATTTAATATTAGTTAGGTCCAATGAAAAAAAGCTCTATTTTTCTCGATTGCATGGCTCTGGTACCATATGTAACCGCTTAAGCTCACCACTAGTAAATATTATCCGTTTCGGCCCATTATGTATCGTCGTTTTGGCCCGTTATGTATTGTCGTCAGTCTCACGGTTTTAA

Coding sequence (CDS)

ATGGATATGGATGCCTTAAAAGAGGCCTCCAGAAAGGTTGCTGCTGTGAAGAATCGTGGCCCTAGAGCTTCGAATGGTGATATCATGGCCAATGGAGTTGTTGATCAATGGTTGCAACAGAAGAGGATCAGGCAGCAACCTATGGATCAGTGGGGCTTGGGCCACATAGAACTTACTGAGTTTTTCTTGTCCTATACCTGTACTTTGGTTGGATGGCTTTCATTGTCTATACACTTTCAGATAGGAATAGAAGGAGAAGAAAATTCATGA

Protein sequence

MDMDALKEASRKVAAVKNRGPRASNGDIMANGVVDQWLQQKRIRQQPMDQWGLGHIELTEFFLSYTCTLVGWLSLSIHFQIGIEGEENS
Homology
[Close]
BLAST of Cp4.1LG05g13330 vs. NCBI nr
Match: XP_023534289.1 (protein FAR1-RELATED SEQUENCE 9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 107 bits (268), Expect = 7.35e-28
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 1  MDMDALKEASRKVAAVKNRGPRASNGDIMANGVVDQWLQQKRIRQQPMDQW 51
          MDMDALKEASRKVAAVKNRGPRASNGDIMANGVVDQWLQQKRIRQQPMDQW
Sbjct: 1  MDMDALKEASRKVAAVKNRGPRASNGDIMANGVVDQWLQQKRIRQQPMDQW 51

[Close]
BLAST of Cp4.1LG05g13330 vs. NCBI nr
Match: KAG6604982.1 (Protein FAR1-RELATED SEQUENCE 9, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.9 bits (224), Expect = 3.66e-20
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 0 

Query: 1   MDMDALKEASRKVAAVKNRGPRASNGDIMANGVVDQWLQQKRIRQQ 46
           MDMDALKEASRKVAAVKNRGPRASNGDIMANGVVDQWLQQKRIR +
Sbjct: 110 MDMDALKEASRKVAAVKNRGPRASNGDIMANGVVDQWLQQKRIRNR 155

[Close]
BLAST of Cp4.1LG05g13330 vs. NCBI nr
Match: XP_022971143.1 (protein FAR1-RELATED SEQUENCE 9-like [Cucurbita maxima])

HSP 1 Score: 85.9 bits (211), Expect = 1.02e-19
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 0 

Query: 1  MDMDALKEASRKVAAVKNRGPRASNGDIMANGVVDQWLQQKRIRQQ 46
          MDMDALKEASRKVAAVKNRGPRA NGDI+ANGVVDQWLQQK+IR +
Sbjct: 1  MDMDALKEASRKVAAVKNRGPRALNGDIIANGVVDQWLQQKKIRNR 46

[Close]
BLAST of Cp4.1LG05g13330 vs. NCBI nr
Match: KAG7035016.1 (hypothetical protein SDJN02_01809, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 58.9 bits (141), Expect = 3.08e-09
Identity = 29/38 (76.32%), Postives = 30/38 (78.95%), Query Frame = 0 

Query: 6  LKEASRKVAAVKNRGPRASNGDIMANGVVDQWLQQKRI 43
          LK  +R      NRGPRASNGDIMANGVVDQWLQQKRI
Sbjct: 31 LKRWTRNDRNGDNRGPRASNGDIMANGVVDQWLQQKRI 68

[Close]
BLAST of Cp4.1LG05g13330 vs. NCBI nr
Match: KAG6570968.1 (Protein FAR1-RELATED SEQUENCE 9, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 61.2 bits (147), Expect = 1.73e-08
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 3   MDALKEASRKVAAVKNRGPRASNGDIMANGVV 34
           MDALKEASRKVAAVKNRGP A+NGDIMANGVV
Sbjct: 446 MDALKEASRKVAAVKNRGPGATNGDIMANGVV 477

[Close]
BLAST of Cp4.1LG05g13330 vs. ExPASy TrEMBL
Match: A0A6J1I5Z3 (protein FAR1-RELATED SEQUENCE 9-like OS=Cucurbita maxima OX=3661 GN=LOC111469904 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.95e-20
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 0 

Query: 1  MDMDALKEASRKVAAVKNRGPRASNGDIMANGVVDQWLQQKRIRQQ 46
          MDMDALKEASRKVAAVKNRGPRA NGDI+ANGVVDQWLQQK+IR +
Sbjct: 1  MDMDALKEASRKVAAVKNRGPRALNGDIIANGVVDQWLQQKKIRNR 46

[Close]
BLAST of Cp4.1LG05g13330 vs. ExPASy TrEMBL
Match: A0A6J1J9D1 (Protein FAR1-RELATED SEQUENCE OS=Cucurbita maxima OX=3661 GN=LOC111483778 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.36e-09
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 3   MDALKEASRKVAAVKNRGPRASNGDIMANGVV 34
           MDALKEASRKVAAVKNRGP A+NGDIMANGVV
Sbjct: 446 MDALKEASRKVAAVKNRGPGATNGDIMANGVV 477

[Close]
BLAST of Cp4.1LG05g13330 vs. ExPASy TrEMBL
Match: A0A6J1FUG3 (Protein FAR1-RELATED SEQUENCE OS=Cucurbita moschata OX=3662 GN=LOC111448901 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.36e-09
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 3   MDALKEASRKVAAVKNRGPRASNGDIMANGVV 34
           MDALKEASRKVAAVKNRGP A+NGDIMANGVV
Sbjct: 446 MDALKEASRKVAAVKNRGPGATNGDIMANGVV 477

[Close]
BLAST of Cp4.1LG05g13330 vs. ExPASy TrEMBL
Match: A0A5D3BPC1 (Protein FAR1-RELATED SEQUENCE OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00680 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.91e-08
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 3   MDALKEASRKVAAVKNRGPRASNGDIMANGVV 34
           M+ALKEASRKVAAVKNRGP A+NGDIMANGVV
Sbjct: 447 MEALKEASRKVAAVKNRGPGATNGDIMANGVV 478

[Close]
BLAST of Cp4.1LG05g13330 vs. ExPASy TrEMBL
Match: A0A1S3BIG2 (Protein FAR1-RELATED SEQUENCE OS=Cucumis melo OX=3656 GN=LOC103490440 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.91e-08
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 3   MDALKEASRKVAAVKNRGPRASNGDIMANGVV 34
           M+ALKEASRKVAAVKNRGP A+NGDIMANGVV
Sbjct: 447 MEALKEASRKVAAVKNRGPGATNGDIMANGVV 478

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g13330 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG05g13330 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023534289.17.35e-28100.00protein FAR1-RELATED SEQUENCE 9-like [Cucurbita pepo subsp. pepo][more]
KAG6604982.13.66e-2095.65Protein FAR1-RELATED SEQUENCE 9, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022971143.11.02e-1989.13protein FAR1-RELATED SEQUENCE 9-like [Cucurbita maxima][more]
KAG7035016.13.08e-0976.32hypothetical protein SDJN02_01809, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6570968.11.73e-0893.75Protein FAR1-RELATED SEQUENCE 9, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of Cp4.1LG05g13330 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1I5Z34.95e-2089.13protein FAR1-RELATED SEQUENCE 9-like OS=Cucurbita maxima OX=3661 GN=LOC111469904... [more]
A0A6J1J9D18.36e-0993.75Protein FAR1-RELATED SEQUENCE OS=Cucurbita maxima OX=3661 GN=LOC111483778 PE=3 S... [more]
A0A6J1FUG38.36e-0993.75Protein FAR1-RELATED SEQUENCE OS=Cucurbita moschata OX=3662 GN=LOC111448901 PE=3... [more]
A0A5D3BPC12.91e-0890.63Protein FAR1-RELATED SEQUENCE OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A1S3BIG22.91e-0890.63Protein FAR1-RELATED SEQUENCE OS=Cucumis melo OX=3656 GN=LOC103490440 PE=3 SV=1[more]
BLAST of Cp4.1LG05g13330 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..15
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g13330.1Cp4.1LG05g13330.1mRNA