Cp4.1LG05g00310 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG05g00310
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG05: 788346 .. 788576 (-)
RNA-Seq ExpressionCp4.1LG05g00310
SyntenyCp4.1LG05g00310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAGAATCTCATTCATTTTCGTCTTCATATTGGCCTTCCTCTCAGTTGCAGCCATGGCAGAGCCCAAAGAAAAAGATGGTGCAGTGACTAACTTCCATGACCAGCAGTTCATATGGGGAAGGAAGGAGAGAGTGAATCATGGAAGCTTTAGAAGCCCTAAGAAACACCTTCTCAATCCTCACCATTTTCAGCCATTTGATCCCTTTCAAGACCCTATTGATCTCTGA

mRNA sequence

ATGGCTAGAATCTCATTCATTTTCGTCTTCATATTGGCCTTCCTCTCAGTTGCAGCCATGGCAGAGCCCAAAGAAAAAGATGGTGCAGTGACTAACTTCCATGACCAGCAGTTCATATGGGGAAGGAAGGAGAGAGTGAATCATGGAAGCTTTAGAAGCCCTAAGAAACACCTTCTCAATCCTCACCATTTTCAGCCATTTGATCCCTTTCAAGACCCTATTGATCTCTGA

Coding sequence (CDS)

ATGGCTAGAATCTCATTCATTTTCGTCTTCATATTGGCCTTCCTCTCAGTTGCAGCCATGGCAGAGCCCAAAGAAAAAGATGGTGCAGTGACTAACTTCCATGACCAGCAGTTCATATGGGGAAGGAAGGAGAGAGTGAATCATGGAAGCTTTAGAAGCCCTAAGAAACACCTTCTCAATCCTCACCATTTTCAGCCATTTGATCCCTTTCAAGACCCTATTGATCTCTGA

Protein sequence

MARISFIFVFILAFLSVAAMAEPKEKDGAVTNFHDQQFIWGRKERVNHGSFRSPKKHLLNPHHFQPFDPFQDPIDL
Homology
BLAST of Cp4.1LG05g00310 vs. NCBI nr
Match: KGN60344.1 (hypothetical protein Csa_002159 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 5.82e-20
Identity = 46/79 (58.23%), Postives = 55/79 (69.62%), Query Frame = 0

Query: 1  MARISFIFVFILAFLSV---AAMAEPKEKDGAVTNFH-DQQFIWGRKERVNHGSFRSPKK 60
          MA+ SFI +FILAF+SV   AA+ +  +     T FH   +FIWGRKER+NHGSFR P K
Sbjct: 1  MAKFSFILIFILAFISVTVAAAIGDMSKGKDVATKFHYHDEFIWGRKERINHGSFRGPDK 60

Query: 61 HLLN-PHHFQPFDPFQDPI 74
          +LLN PH F PFD FQ PI
Sbjct: 61 YLLNDPHPFHPFDQFQGPI 79

BLAST of Cp4.1LG05g00310 vs. NCBI nr
Match: XP_007158215.1 (hypothetical protein PHAVU_002G133900g, partial [Phaseolus vulgaris] >ESW30209.1 hypothetical protein PHAVU_002G133900g, partial [Phaseolus vulgaris])

HSP 1 Score: 48.9 bits (115), Expect = 2.43e-05
Identity = 27/67 (40.30%), Postives = 35/67 (52.24%), Query Frame = 0

Query: 10 FILAFLSVAAMAEPKEKDGAVTNFH--DQQFIWGRKERVNHGSFRSPKKHLLNPHHFQPF 69
          FIL  L   ++     ++      H  +Q  IW RK  +NHGS R PKKHLLNP    PF
Sbjct: 18 FILFLLLATSLVSVHSRNTLTPEDHAQEQHKIWHRKTWMNHGSHRGPKKHLLNPTIQHPF 77

Query: 70 DPFQDPI 74
           P + P+
Sbjct: 78 QPRELPL 84

BLAST of Cp4.1LG05g00310 vs. NCBI nr
Match: PQM41608.1 (hypothetical protein Pyn_19607 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 48.5 bits (114), Expect = 4.19e-05
Identity = 25/47 (53.19%), Postives = 30/47 (63.83%), Query Frame = 0

Query: 18 AAMAEPK---EKDGAVTNFHDQQFIWGRKERVNHGSFRSPKKHLLNP 61
          AAM E     E++  V      Q  WGRK R+NHGSFRSP+KHL+NP
Sbjct: 33 AAMEERAVRIEQEDKVRGLQGMQ-AWGRKTRMNHGSFRSPRKHLVNP 78

BLAST of Cp4.1LG05g00310 vs. NCBI nr
Match: PQP94128.1 (hypothetical protein Pyn_34841 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 48.5 bits (114), Expect = 4.19e-05
Identity = 25/47 (53.19%), Postives = 30/47 (63.83%), Query Frame = 0

Query: 18 AAMAEPK---EKDGAVTNFHDQQFIWGRKERVNHGSFRSPKKHLLNP 61
          AAM E     E++  V      Q  WGRK R+NHGSFRSP+KHL+NP
Sbjct: 33 AAMEERAVRIEQEDKVRGLQGMQ-AWGRKTRMNHGSFRSPRKHLVNP 78

BLAST of Cp4.1LG05g00310 vs. NCBI nr
Match: KAF3959830.1 (hypothetical protein CMV_015393 [Castanea mollissima])

HSP 1 Score: 45.8 bits (107), Expect = 4.00e-04
Identity = 23/50 (46.00%), Postives = 29/50 (58.00%), Query Frame = 0

Query: 28 GAVTNFHDQQFI---WGRKERVNHGSFRSPKKHLLNPHHFQPFDPFQDPI 74
          GAV + H  +     W RK R+NHGSFR P+KHL+NP    PF     P+
Sbjct: 36 GAVDHLHHVKGTSSSWRRKLRINHGSFRGPRKHLVNPTVQHPFQARDFPV 85

BLAST of Cp4.1LG05g00310 vs. ExPASy TrEMBL
Match: A0A0A0LH37 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895900 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.82e-20
Identity = 46/79 (58.23%), Postives = 55/79 (69.62%), Query Frame = 0

Query: 1  MARISFIFVFILAFLSV---AAMAEPKEKDGAVTNFH-DQQFIWGRKERVNHGSFRSPKK 60
          MA+ SFI +FILAF+SV   AA+ +  +     T FH   +FIWGRKER+NHGSFR P K
Sbjct: 1  MAKFSFILIFILAFISVTVAAAIGDMSKGKDVATKFHYHDEFIWGRKERINHGSFRGPDK 60

Query: 61 HLLN-PHHFQPFDPFQDPI 74
          +LLN PH F PFD FQ PI
Sbjct: 61 YLLNDPHPFHPFDQFQGPI 79

BLAST of Cp4.1LG05g00310 vs. ExPASy TrEMBL
Match: V7CJC2 (Uncharacterized protein (Fragment) OS=Phaseolus vulgaris OX=3885 GN=PHAVU_002G133900g PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.18e-05
Identity = 27/67 (40.30%), Postives = 35/67 (52.24%), Query Frame = 0

Query: 10 FILAFLSVAAMAEPKEKDGAVTNFH--DQQFIWGRKERVNHGSFRSPKKHLLNPHHFQPF 69
          FIL  L   ++     ++      H  +Q  IW RK  +NHGS R PKKHLLNP    PF
Sbjct: 18 FILFLLLATSLVSVHSRNTLTPEDHAQEQHKIWHRKTWMNHGSHRGPKKHLLNPTIQHPF 77

Query: 70 DPFQDPI 74
           P + P+
Sbjct: 78 QPRELPL 84

BLAST of Cp4.1LG05g00310 vs. ExPASy TrEMBL
Match: A0A314XPF7 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_34841 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 2.03e-05
Identity = 25/47 (53.19%), Postives = 30/47 (63.83%), Query Frame = 0

Query: 18 AAMAEPK---EKDGAVTNFHDQQFIWGRKERVNHGSFRSPKKHLLNP 61
          AAM E     E++  V      Q  WGRK R+NHGSFRSP+KHL+NP
Sbjct: 33 AAMEERAVRIEQEDKVRGLQGMQ-AWGRKTRMNHGSFRSPRKHLVNP 78

BLAST of Cp4.1LG05g00310 vs. ExPASy TrEMBL
Match: A0A314UXH9 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_19607 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 2.03e-05
Identity = 25/47 (53.19%), Postives = 30/47 (63.83%), Query Frame = 0

Query: 18 AAMAEPK---EKDGAVTNFHDQQFIWGRKERVNHGSFRSPKKHLLNP 61
          AAM E     E++  V      Q  WGRK R+NHGSFRSP+KHL+NP
Sbjct: 33 AAMEERAVRIEQEDKVRGLQGMQ-AWGRKTRMNHGSFRSPRKHLVNP 78

BLAST of Cp4.1LG05g00310 vs. ExPASy TrEMBL
Match: A0A1R3JFD0 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_16914 PE=4 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 7.59e-04
Identity = 26/59 (44.07%), Postives = 34/59 (57.63%), Query Frame = 0

Query: 7  IFVFILAFLSVA----AMAEPKEKDGAVTNFHDQQFIWGRKERVNHGSFRSPKKHLLNP 61
          +F+ I A L++A    A A      GAV   +       RK+R+NHGSFR P+KHLLNP
Sbjct: 13 LFLLIFASLTLATIHPAAAATTGVAGAVAQDNHHHQTRQRKQRMNHGSFRGPRKHLLNP 71

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KGN60344.15.82e-2058.23hypothetical protein Csa_002159 [Cucumis sativus][more]
XP_007158215.12.43e-0540.30hypothetical protein PHAVU_002G133900g, partial [Phaseolus vulgaris] >ESW30209.1... [more]
PQM41608.14.19e-0553.19hypothetical protein Pyn_19607 [Prunus yedoensis var. nudiflora][more]
PQP94128.14.19e-0553.19hypothetical protein Pyn_34841 [Prunus yedoensis var. nudiflora][more]
KAF3959830.14.00e-0446.00hypothetical protein CMV_015393 [Castanea mollissima][more]
Match NameE-valueIdentityDescription
A0A0A0LH372.82e-2058.23Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895900 PE=4 SV=1[more]
V7CJC21.18e-0540.30Uncharacterized protein (Fragment) OS=Phaseolus vulgaris OX=3885 GN=PHAVU_002G13... [more]
A0A314XPF72.03e-0553.19Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_348... [more]
A0A314UXH92.03e-0553.19Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_196... [more]
A0A1R3JFD07.59e-0444.07Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_16914 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..76

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g00310.1Cp4.1LG05g00310.1mRNA