Cp4.1LG04g12010 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g12010
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Pentatricopeptide repeat-containing protein
Location	Cp4.1LG04: 8398444 .. 8402041 (+)
RNA-Seq Expression	Cp4.1LG04g12010
Synteny	Cp4.1LG04g12010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCTTCAAAGCAGCCTTTGCCGCCATTTGCATCATTCATCATTCACGCTTCAGCTTGAGCTCCATGATCAATCTTAATGTCAGTAATCTGTTCTTCAGGTATCCACATTTGGTCCCAAGATCATCGTTCCAAATCCCCATAATTTTTCTACTCCACACTCACTCTCTTCCACATCACAAAGATAAACCCACCAATTGGAATACTTCTCACGCCCTGATTCAATCAAATCCACTTCTATCCCTCTTGGAAAAGTGCACTTCCATGACGCAGATGAGGCAAATTCATGCCCAAATGGTTTCAACTGGCTTGATCTCAGATGGGTTTGCTCTGAGTCGCCTTGTTGCGTTCTGTGCGATTTCTGAGTGGCGAAATCTTGACTATTGTGACAAACTTCTCGACAATGCTCCTAACCCGAATGTTTTTTCTTGGAATGTAGCGATTAGGGGTTATTTAGAGAGTGAGAATCCCAGATATGCTGTTTTTTTGTACAGGAAAATGCTGAGAAAAGGTGGGTCTATTCCTGATAATTATTCTTATCCTCTGTTGTTTAAAGCTTGTGCTGGTTTGTCGTTGAGTTTCACGGCTAATGAGATTCTTGGGCATGTAGTACATTTGGGTTTTGATTCGGATTTGTTTGTGCACAATGCGATTATTCATGTGCTGGTTTCTTGTGGAGAATTGTTGGCTGCACGTAAGGTGTTCGACGAAAGTTGCGTGAGAGATTTGGTTTCTTGGAACTCGATAATCAATGGGTATGTTAGGTGTGGGTTGGCAGACGAGGCATTGAATCTTTATTACAAGATGGAGGAGCTGAAAGTGAAGCCAGATGAGGTCACAATGATTGGACTCGTTTCAGCTTCTGCCCAGCTTGAAAATGTAGCTCTTGGAAGAAAGCTTCATCAATTCATTGAAGAAATGGGTTTGAATTTGACCATTCCACTTGTCAATGCATTGATGGATATGTACATTAAGTGTAAGAATATTGAGGCTGCAGAAACACTATTTGAGAACATGACAAAGAAAACCATTGTTTCATGGACTACAATGGTTGTTGGATATGCCAAATGTGGGATGTTGGAAAGTGCTGTGAGGCTGTTCAATGAGATGCCAGAGAAGGATGTCGTGCCATGGAATGCTCTAATTGGTGGCTTTGTTCAAGCCAAACGTAGTAAGGAGGCTTTGGCTCTGTTTCATGAAATGCAAGCCAGCAATGTTGACCCAGATGAGGTTACTGTCGTTAGTTGTTTATCTGCATGCTCTCAACTTGGAGCCCTAGATGTTGGAATTTGGATGCATCATTTCGTTGATAAACAAAATCTTACTATGAACGTTGCCTTAGGAACTGCTCTAGTTGACATGTATGCTAAGTGTGGGAACATAAAAAAGGCTCTACAGGTTTTTGAGGAGATGCCAGGAAGAAACTCATTGACATGGACAGCTATAATTTGTGGTCTAGCACTTCATGGACAAGCACATGCTGCCATATCTTACTTCTCGGAGATGGTTAGCATTGGACTGGTGCCTGATGAGATCACCTTCATTGGGGTCTTATCGGCTTGTTGTCACGGTGGATTGGTTGATCAAGGTCGAGACTATTTTTATCAAATGAGCTCCAAATATGGTATCTCCCCAAAACTTAAGCATTATTCTTGCATGGTGGACCTTCTAGGTAGGGCTGGCTTCTTGGAAGAGGCAGAAGAGATTATTAGGAGCATGCCTTTTGAGGCAGATGCCGTAGTGTGGGGAGCATTGTTCTTTGGCAGCCGTATGCATGGAAATGTTCATATAGGAGAACGAGCTGCTTTTAAGCTTCTTGAGTTGGATCCTCATGATAGTGGAATTTATGTTTTGCTTGCAAATATGTATGGTGATGCTAATATGTGGGAGAAGGCAAGGAAGGTAAGAAAGATGATGGAAGAAAGAGGGGTCGAGAAAACACCTGGTTGTAGTTCAATTGAGATTAATGGTTTAGTTTATGAGTTTATAATTCGTGATAAGTCACATCCTCAATCGGAGAAAATTTACGAGTGTTTAACTTGGTTAACAAGACAACTTGAACTTGTTGAGGACGAAACATCTTCATTGAAAGAATTCTGAGGTTGTCATATTTGAGTTGACAAAGAGTAGGGCTCTAAAATATGCTCGACCAAGCTCCATCTCCCACAGCTAGCCTTGAGTCGGTGAAGTCTTTCGATGATTAGTGAGAGATCAATTATGAATATATTACAAAGAGTGGGGCTCTCCGACACCTCGGTTCAAAAAAGAATATTTAATAAAAGACTGCTTTCTAGTCTAGAAGTGATTCTGAAGAGCCTTTGTTACATTGAGATGATGAAGGTCTACCTCTCAAAGCCCACAAAGCTTCTTCAGAAGGATAATCACTTGAATCTTCTGAATGGTAAGAGTTTGTTCTGTACTGTAAGCAATGAGCTCCTTTCAAGCCTTTTCAGTTTCTTGACCTTTTGCATTCTCTTGTCCAGTTATAGTTGAAGCATGGCATCTTGGAAAAAGCTTCCAATAATTGAAATGAAAGCTAAACAGGTCCATATTCAGCTCATTTATTCTTGCCTCACCCATTCTATAACAAGTCACCAGCGGGTTTTTGTCGATATGCTTCATTGAAGCATATGTAATGGTGGTTGGTGGGTATGATGATTCAAGTTTATGTGCTCAACGCTAGTAGCATCTCGATTTTTTAAACCATTTTATACGTGTAAACCATGTCCCTTCGATTCCTTTGGATGAAGCAATTTTGAAATGGAGGTAGAACATAAATAGGTTTAATCTTATTTTGGTCTCAAAACGTTCATGTACATCTTATTTTGTGCTCAAATCTTTCATGTCCTCGAAAATTCAAATGTTATCTTCTAAGTCTAGAGATGAAAATAGAACATTTGAAGTTAAATAAAAGACTAAATAAAACTATTAAAAGTTTTAACACCAAAATAAGATTTACACCATATATTAAAGTTTAATCTATAGTATCATATGGTTATGGTCGTGTGGGGAACTCATTATGTTGACTTCGTGTGCTCGAAATTGTTAAGGACCTTATTTGCTCTCCTCTGACTTTTGTCTTATGTACATTATCTGTTTGATCATCAAAGTGATTCTATTCTCCTTCCCCAGATTTTGGAACTGGCCTGCCGAGTGTTAAAGTGCCCACAGGAAGGAAAGGCTCTTTAGAATCATGTTCTGAAAAATGACCTTGTGGTAGGGATCGCACTTCAAAAGAAATAAAGCTCAATCCATGTGTTCTGTGTAACTGGGTCAGAGGGAAGACACAAAGATTGCCACCGACAAAATTGGCCCGACACTGACATTGAGAGGTGAAAGACGAGGAGCGAATGGATATTAGGTATTGTGCATATCGACTTTTGTGCAATACTTAGAGTATCACATTAGTGGGGAACGTGTGAAGTCTCATCTGAGATATCTCAGGAAGAAGATGAAAAAATCGTGGTCAGCCCATAACCCATTGACATGAGGTATGTTATTTCTTGCAAATCAAGTGTCATGATTCATGGAACCATATATTCCAGGTTGTTTACGTGATTTTTCATCATATATTTACAGTCCCTTTTTGTGATACAAGTTA

mRNA sequence

TCCTTCAAAGCAGCCTTTGCCGCCATTTGCATCATTCATCATTCACGCTTCAGCTTGAGCTCCATGATCAATCTTAATGTCAGTAATCTGTATCCACATTTGGTCCCAAGATCATCGTTCCAAATCCCCATAATTTTTCTACTCCACACTCACTCTCTTCCACATCACAAAGATAAACCCACCAATTGGAATACTTCTCACGCCCTGATTCAATCAAATCCACTTCTATCCCTCTTGGAAAAGTGCACTTCCATGACGCAGATGAGGCAAATTCATGCCCAAATGGTTTCAACTGGCTTGATCTCAGATGGGTTTGCTCTGAGTCGCCTTGTTGCGTTCTGTGCGATTTCTGAGTGGCGAAATCTTGACTATTGTGACAAACTTCTCGACAATGCTCCTAACCCGAATGTTTTTTCTTGGAATGTAGCGATTAGGGGTTATTTAGAGAGTGAGAATCCCAGATATGCTGTTTTTTTGTACAGGAAAATGCTGAGAAAAGGTGGGTCTATTCCTGATAATTATTCTTATCCTCTGTTGTTTAAAGCTTGTGCTGGTTTGTCGTTGAGTTTCACGGCTAATGAGATTCTTGGGCATGTAGTACATTTGGGTTTTGATTCGGATTTGTTTGTGCACAATGCGATTATTCATGTGCTGGTTTCTTGTGGAGAATTGTTGGCTGCACGTAAGGTGTTCGACGAAAGTTGCGTGAGAGATTTGGTTTCTTGGAACTCGATAATCAATGGGTATGTTAGGTGTGGGTTGGCAGACGAGGCATTGAATCTTTATTACAAGATGGAGGAGCTGAAAGTGAAGCCAGATGAGGTCACAATGATTGGACTCGTTTCAGCTTCTGCCCAGCTTGAAAATGTAGCTCTTGGAAGAAAGCTTCATCAATTCATTGAAGAAATGGGTTTGAATTTGACCATTCCACTTGTCAATGCATTGATGGATATGTACATTAAGTGTAAGAATATTGAGGCTGCAGAAACACTATTTGAGAACATGACAAAGAAAACCATTGTTTCATGGACTACAATGGTTGTTGGATATGCCAAATGTGGGATGTTGGAAAGTGCTGTGAGGCTGTTCAATGAGATGCCAGAGAAGGATGTCGTGCCATGGAATGCTCTAATTGGTGGCTTTGTTCAAGCCAAACATTTTGGAACTGGCCTGCCGAGTGTTAAAGTGCCCACAGGAAGGAAAGGCTCTTTAGAATCATGTTCTGAAAAATGACCTTGTGGTAGGGATCGCACTTCAAAAGAAATAAAGCTCAATCCATGTGTTCTGTGTAACTGGGTCAGAGGGAAGACACAAAGATTGCCACCGACAAAATTGGCCCGACACTGACATTGAGAGGTGAAAGACGAGGAGCGAATGGATATTAGGTATTGTGCATATCGACTTTTGTGCAATACTTAGAGTATCACATTAGTGGGGAACGTGTGAAGTCTCATCTGAGATATCTCAGGAAGAAGATGAAAAAATCGTGGTCAGCCCATAACCCATTGACATGAGGTATGTTATTTCTTGCAAATCAAGTGTCATGATTCATGGAACCATATATTCCAGGTTGTTTACGTGATTTTTCATCATATATTTACAGTCCCTTTTTGTGATACAAGTTA

Coding sequence (CDS)

TCCTTCAAAGCAGCCTTTGCCGCCATTTGCATCATTCATCATTCACGCTTCAGCTTGAGCTCCATGATCAATCTTAATGTCAGTAATCTGTATCCACATTTGGTCCCAAGATCATCGTTCCAAATCCCCATAATTTTTCTACTCCACACTCACTCTCTTCCACATCACAAAGATAAACCCACCAATTGGAATACTTCTCACGCCCTGATTCAATCAAATCCACTTCTATCCCTCTTGGAAAAGTGCACTTCCATGACGCAGATGAGGCAAATTCATGCCCAAATGGTTTCAACTGGCTTGATCTCAGATGGGTTTGCTCTGAGTCGCCTTGTTGCGTTCTGTGCGATTTCTGAGTGGCGAAATCTTGACTATTGTGACAAACTTCTCGACAATGCTCCTAACCCGAATGTTTTTTCTTGGAATGTAGCGATTAGGGGTTATTTAGAGAGTGAGAATCCCAGATATGCTGTTTTTTTGTACAGGAAAATGCTGAGAAAAGGTGGGTCTATTCCTGATAATTATTCTTATCCTCTGTTGTTTAAAGCTTGTGCTGGTTTGTCGTTGAGTTTCACGGCTAATGAGATTCTTGGGCATGTAGTACATTTGGGTTTTGATTCGGATTTGTTTGTGCACAATGCGATTATTCATGTGCTGGTTTCTTGTGGAGAATTGTTGGCTGCACGTAAGGTGTTCGACGAAAGTTGCGTGAGAGATTTGGTTTCTTGGAACTCGATAATCAATGGGTATGTTAGGTGTGGGTTGGCAGACGAGGCATTGAATCTTTATTACAAGATGGAGGAGCTGAAAGTGAAGCCAGATGAGGTCACAATGATTGGACTCGTTTCAGCTTCTGCCCAGCTTGAAAATGTAGCTCTTGGAAGAAAGCTTCATCAATTCATTGAAGAAATGGGTTTGAATTTGACCATTCCACTTGTCAATGCATTGATGGATATGTACATTAAGTGTAAGAATATTGAGGCTGCAGAAACACTATTTGAGAACATGACAAAGAAAACCATTGTTTCATGGACTACAATGGTTGTTGGATATGCCAAATGTGGGATGTTGGAAAGTGCTGTGAGGCTGTTCAATGAGATGCCAGAGAAGGATGTCGTGCCATGGAATGCTCTAATTGGTGGCTTTGTTCAAGCCAAACATTTTGGAACTGGCCTGCCGAGTGTTAAAGTGCCCACAGGAAGGAAAGGCTCTTTAGAATCATGTTCTGAAAAATGA

Protein sequence

SFKAAFAAICIIHHSRFSLSSMINLNVSNLYPHLVPRSSFQIPIIFLLHTHSLPHHKDKPTNWNTSHALIQSNPLLSLLEKCTSMTQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNVFSWNVAIRGYLESENPRYAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGHVVHLGFDSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSIINGYVRCGLADEALNLYYKMEELKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEEMGLNLTIPLVNALMDMYIKCKNIEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALIGGFVQAKHFGTGLPSVKVPTGRKGSLESCSEK

Homology

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BLAST of Cp4.1LG04g12010 vs. ExPASy Swiss-Prot
Match: Q9SJZ3 (Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E28 PE=2 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 4.8e-110
Identity = 196/358 (54.75%), Postives = 261/358 (72.91%), Query Frame = 0


Query: 30  LYPHLVPRSSFQIPIIFLLHTHSLPHHKDKPTNWNTSHALIQSNPLLSLLEKCTSMTQMR 89
           L P L P+ +  +       T SLPHH+DKP NWN++H+ +  NPLLSLLEKC  +  ++
Sbjct: 11  LPPPLTPKLNRSLYSHSQRRTRSLPHHRDKPINWNSTHSFVLHNPLLSLLEKCKLLLHLK 70

Query: 90  QIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNVFSWNVAIRGYLE 149
           QI AQM+  GLI D FA SRL+AFCA+SE R LDY  K+L    NPN+FSWNV IRG+ E
Sbjct: 71  QIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIENPNIFSWNVTIRGFSE 130

Query: 150 SENPRYAVFLYRKMLRKG--GSIPDNYSYPLLFKACAGLSLSFTANEILGHVVHLGFDSD 209
           SENP+ +  LY++MLR G   S PD+++YP+LFK CA L LS   + ILGHV+ L  +  
Sbjct: 131 SENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILGHVLKLRLELV 190

Query: 210 LFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSIINGYVRCGLADEALNLYYKMEE 269
             VHNA IH+  SCG++  ARKVFDES VRDLVSWN +INGY + G A++A+ +Y  ME 
Sbjct: 191 SHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMES 250

Query: 270 LKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEEMGLNLTIPLVNALMDMYIKCKNIEA 329
             VKPD+VTMIGLVS+ + L ++  G++ +++++E GL +TIPLVNALMDM+ KC +I  
Sbjct: 251 EGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHE 310

Query: 330 AETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALIGGFVQAK 386
           A  +F+N+ K+TIVSWTTM+ GYA+CG+L+ + +LF++M EKDVV WNA+IGG VQAK
Sbjct: 311 ARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAK 368

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BLAST of Cp4.1LG04g12010 vs. ExPASy Swiss-Prot
Match: O82380 (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 1.7e-70
Identity = 135/332 (40.66%), Postives = 204/332 (61.45%), Query Frame = 0


Query: 52  SLPHHKDKPTNWNTSHALIQSNPLLSLLEKCTSMTQMRQIHAQMVSTGLISDGFALSRLV 111
           SLP H +  +N N      + +  +SL+E+C S+ Q++Q H  M+ TG  SD ++ S+L 
Sbjct: 11  SLPRHPNF-SNPNQPTTNNERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLF 70

Query: 112 AFCAISEWRNLDYCDKLLDNAPNPNVFSWNVAIRGYLESENPRYAVFLYRKMLRKGGSIP 171
           A  A+S + +L+Y  K+ D  P PN F+WN  IR Y    +P  +++ +  M+ +    P
Sbjct: 71  AMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYP 130

Query: 172 DNYSYPLLFKACAGLSLSFTANEILGHVVHLGFDSDLFVHNAIIHVLVSCGELLAARKVF 231
           + Y++P L KA A +S       + G  V     SD+FV N++IH   SCG+L +A KVF
Sbjct: 131 NKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVF 190

Query: 232 DESCVRDLVSWNSIINGYVRCGLADEALNLYYKMEELKVKPDEVTMIGLVSASAQLENVA 291
                +D+VSWNS+ING+V+ G  D+AL L+ KME   VK   VTM+G++SA A++ N+ 
Sbjct: 191 TTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLE 250

Query: 292 LGRKLHQFIEEMGLNLTIPLVNALMDMYIKCKNIEAAETLFENMTKKTIVSWTTMVVGYA 351
            GR++  +IEE  +N+ + L NA++DMY KC +IE A+ LF+ M +K  V+WTTM+ GYA
Sbjct: 251 FGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYA 310

Query: 352 KCGMLESAVRLFNEMPEKDVVPWNALIGGFVQ 384
                E+A  + N MP+KD+V WNALI  + Q
Sbjct: 311 ISEDYEAAREVLNSMPQKDIVAWNALISAYEQ 341

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BLAST of Cp4.1LG04g12010 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.2e-57
Identity = 131/374 (35.03%), Postives = 196/374 (52.41%), Query Frame = 0


Query: 32  PHLVPRSSFQIPIIFLLHTHSLPHHKDKPTNWNTSHALIQSNPLLSLLEKCTSMTQMRQI 91
           P  VP SS+          H LP   D P      +  I+++P LSLL  C ++  +R I
Sbjct: 7   PLTVPSSSYPF--------HFLPSSSDPP------YDSIRNHPSLSLLHNCKTLQSLRII 66

Query: 92  HAQMVSTGLISDGFALSRLVAFCAIS-EWRNLDYCDKLLDNAPNPNVFSWNVAIRGYLES 151
           HAQM+  GL +  +ALS+L+ FC +S  +  L Y   +      PN+  WN   RG+  S
Sbjct: 67  HAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALS 126

Query: 152 ENPRYAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGHVVHLGFDSDLFV 211
            +P  A+ LY  M+   G +P++Y++P + K+CA         +I GHV+ LG D DL+V
Sbjct: 127 SDPVSALKLYVCMISL-GLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYV 186

Query: 212 HNAIIHVLVSCGELLAARKVFDES-------------------------------CVRDL 271
           H ++I + V  G L  A KVFD+S                                V+D+
Sbjct: 187 HTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDV 246

Query: 272 VSWNSIINGYVRCGLADEALNLYYKMEELKVKPDEVTMIGLVSASAQLENVALGRKLHQF 331
           VSWN++I+GY   G   EAL L+  M +  V+PDE TM+ +VSA AQ  ++ LGR++H +
Sbjct: 247 VSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLW 306

Query: 332 IEEMGLNLTIPLVNALMDMYIKCKNIEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESA 374
           I++ G    + +VNAL+D+Y KC  +E A  LFE +  K ++SW T++ GY    + + A
Sbjct: 307 IDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEA 365

[Close]

BLAST of Cp4.1LG04g12010 vs. ExPASy Swiss-Prot
Match: Q9MA95 (Putative pentatricopeptide repeat-containing protein At3g05240 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E82 PE=3 SV=2)

HSP 1 Score: 203.8 bits (517), Expect = 3.8e-51
Identity = 101/309 (32.69%), Postives = 180/309 (58.25%), Query Frame = 0


Query: 74  PLLSLLEKCTSMTQMRQIHAQMVSTGLISDGFALSRLVAFC-AISEWRNLDYCDKLLDNA 133
           P+LS LE C S+ ++ Q+H  M+ + +I +   LSRL+ FC    E  NL Y   + ++ 
Sbjct: 8   PILSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESI 67

Query: 134 PNPNVFSWNVAIRGYLESENPRYAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTA 193
             P+V+ WN  IRGY  S NP  A+  Y++MLRKG S PD +++P + KAC+GL      
Sbjct: 68  DCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYS-PDYFTFPYVLKACSGLRDIQFG 127

Query: 194 NEILGHVVHLGFDSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSIINGYVRC 253
           + + G VV  GF+ +++V   ++H+ + CGE+    +VF++    ++V+W S+I+G+V  
Sbjct: 128 SCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNN 187

Query: 254 GLADEALNLYYKMEELKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEEMG-------- 313
               +A+  + +M+   VK +E  M+ L+ A  + +++  G+  H F++ +G        
Sbjct: 188 NRFSDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFDPYFQSK 247

Query: 314 LNLTIPLVNALMDMYIKCKNIEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFN 373
           +   + L  +L+DMY KC ++  A  LF+ M ++T+VSW +++ GY++ G  E A+ +F 
Sbjct: 248 VGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFL 307

[Close]

BLAST of Cp4.1LG04g12010 vs. ExPASy Swiss-Prot
Match: A8MQA3 (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 203.0 bits (515), Expect = 6.6e-51
Identity = 111/304 (36.51%), Postives = 173/304 (56.91%), Query Frame = 0


Query: 75  LLSLLEKC---------TSMTQMRQIHAQMVSTGLISDGFALSRLVAFCAIS--EWRNLD 134
           LL ++EKC         +S+T++RQIHA  +  G+      L + + F  +S      + 
Sbjct: 11  LLPMVEKCINLLQTYGVSSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMS 70

Query: 135 YCDKLLDNAPNP-NVFSWNVAIRGYLESENPRYAVFLYRKMLRKGGSIPDNYSYPLLFKA 194
           Y  K+      P NVF WN  IRGY E  N   A  LYR+M   G   PD ++YP L KA
Sbjct: 71  YAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKA 130

Query: 195 CAGLSLSFTANEILGHVVHLGFDSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSW 254
              ++       I   V+  GF S ++V N+++H+  +CG++ +A KVFD+   +DLV+W
Sbjct: 131 VTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAW 190

Query: 255 NSIINGYVRCGLADEALNLYYKMEELKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEE 314
           NS+ING+   G  +EAL LY +M    +KPD  T++ L+SA A++  + LG+++H ++ +
Sbjct: 191 NSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIK 250

Query: 315 MGLNLTIPLVNALMDMYIKCKNIEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRL 367
           +GL   +   N L+D+Y +C  +E A+TLF+ M  K  VSWT+++VG A  G  + A+ L
Sbjct: 251 VGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIEL 310

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BLAST of Cp4.1LG04g12010 vs. NCBI nr
Match: XP_023531862.1 (pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 729 bits (1881), Expect = 2.27e-259
Identity = 364/367 (99.18%), Postives = 364/367 (99.18%), Query Frame = 0


Query: 22  MINLNVSNL---YPHLVPRSSFQIPIIFLLHTHSLPHHKDKPTNWNTSHALIQSNPLLSL 81
           MINLNVSNL   YPHLVPRSSFQIPIIFLLHTHSLPHHKDKPTNWNTSHALIQSNPLLSL
Sbjct: 1   MINLNVSNLFFRYPHLVPRSSFQIPIIFLLHTHSLPHHKDKPTNWNTSHALIQSNPLLSL 60

Query: 82  LEKCTSMTQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNVF 141
           LEKCTSMTQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNVF
Sbjct: 61  LEKCTSMTQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNVF 120

Query: 142 SWNVAIRGYLESENPRYAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGH 201
           SWNVAIRGYLESENPRYAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGH
Sbjct: 121 SWNVAIRGYLESENPRYAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGH 180

Query: 202 VVHLGFDSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSIINGYVRCGLADEA 261
           VVHLGFDSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSIINGYVRCGLADEA
Sbjct: 181 VVHLGFDSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSIINGYVRCGLADEA 240

Query: 262 LNLYYKMEELKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEEMGLNLTIPLVNALMDM 321
           LNLYYKMEELKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEEMGLNLTIPLVNALMDM
Sbjct: 241 LNLYYKMEELKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEEMGLNLTIPLVNALMDM 300

Query: 322 YIKCKNIEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALI 381
           YIKCKNIEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALI
Sbjct: 301 YIKCKNIEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALI 360

Query: 382 GGFVQAK 385
           GGFVQAK
Sbjct: 361 GGFVQAK 367

[Close]

BLAST of Cp4.1LG04g12010 vs. NCBI nr
Match: XP_022927674.1 (pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Cucurbita moschata] >XP_022927681.1 pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Cucurbita moschata] >XP_022927688.1 pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Cucurbita moschata] >XP_022927696.1 pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Cucurbita moschata] >XP_022927700.1 pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Cucurbita moschata])

HSP 1 Score: 712 bits (1838), Expect = 7.77e-253
Identity = 354/367 (96.46%), Postives = 359/367 (97.82%), Query Frame = 0


Query: 22  MINLNVSNL---YPHLVPRSSFQIPIIFLLHTHSLPHHKDKPTNWNTSHALIQSNPLLSL 81
           MINLN SNL   YPHLVPRS FQ+PIIFLLHTHSLPHHKDKPTNWNTSHALIQSNPLLSL
Sbjct: 1   MINLNASNLIFRYPHLVPRSPFQVPIIFLLHTHSLPHHKDKPTNWNTSHALIQSNPLLSL 60

Query: 82  LEKCTSMTQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNVF 141
           LEKCTSM QMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPN+F
Sbjct: 61  LEKCTSMAQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNIF 120

Query: 142 SWNVAIRGYLESENPRYAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGH 201
           SWNVAIRGYLESENPR AVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGH
Sbjct: 121 SWNVAIRGYLESENPRNAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGH 180

Query: 202 VVHLGFDSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSIINGYVRCGLADEA 261
           VVHLGF SDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNS+INGYVRCGLADEA
Sbjct: 181 VVHLGFYSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSMINGYVRCGLADEA 240

Query: 262 LNLYYKMEELKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEEMGLNLTIPLVNALMDM 321
           LNLYYKME+LKVKPDEVTMIG+VSASAQLENVALGRKLHQFIEEMGLNLTIPLVNALMDM
Sbjct: 241 LNLYYKMEDLKVKPDEVTMIGVVSASAQLENVALGRKLHQFIEEMGLNLTIPLVNALMDM 300

Query: 322 YIKCKNIEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALI 381
           YIKCKNIEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALI
Sbjct: 301 YIKCKNIEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALI 360

Query: 382 GGFVQAK 385
           GGFVQAK
Sbjct: 361 GGFVQAK 367

[Close]

BLAST of Cp4.1LG04g12010 vs. NCBI nr
Match: KAG6588182.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 712 bits (1837), Expect = 1.10e-252
Identity = 355/367 (96.73%), Postives = 360/367 (98.09%), Query Frame = 0


Query: 22  MINLNVSNL---YPHLVPRSSFQIPIIFLLHTHSLPHHKDKPTNWNTSHALIQSNPLLSL 81
           MINLNVSNL   YPHLVPRS FQ+PIIFLLHTHSLPHHKDKPTNWNTSHALIQSNPLLSL
Sbjct: 1   MINLNVSNLIFRYPHLVPRSPFQVPIIFLLHTHSLPHHKDKPTNWNTSHALIQSNPLLSL 60

Query: 82  LEKCTSMTQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNVF 141
           LEKCTSMTQMR+IHAQMV TGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNVF
Sbjct: 61  LEKCTSMTQMRKIHAQMVLTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNVF 120

Query: 142 SWNVAIRGYLESENPRYAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGH 201
           SWNVAIRGYLESENPR AVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGH
Sbjct: 121 SWNVAIRGYLESENPRNAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGH 180

Query: 202 VVHLGFDSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSIINGYVRCGLADEA 261
           VVHLGF SDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNS+INGYVRCGLADEA
Sbjct: 181 VVHLGFYSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSMINGYVRCGLADEA 240

Query: 262 LNLYYKMEELKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEEMGLNLTIPLVNALMDM 321
           LNLYYKME+LKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEE+GLNLTIPLVNALMDM
Sbjct: 241 LNLYYKMEDLKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEEIGLNLTIPLVNALMDM 300

Query: 322 YIKCKNIEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALI 381
           YIKCKNIEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALI
Sbjct: 301 YIKCKNIEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALI 360

Query: 382 GGFVQAK 385
           GGFVQAK
Sbjct: 361 GGFVQAK 367

[Close]

BLAST of Cp4.1LG04g12010 vs. NCBI nr
Match: XP_022966942.1 (pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Cucurbita maxima] >XP_022966951.1 pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Cucurbita maxima] >XP_022966960.1 pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Cucurbita maxima])

HSP 1 Score: 695 bits (1794), Expect = 3.75e-246
Identity = 349/367 (95.10%), Postives = 354/367 (96.46%), Query Frame = 0


Query: 22  MINLNVSNL---YPHLVPRSSFQIPIIFLLHTHSLPHHKDKPTNWNTSHALIQSNPLLSL 81
           MI+LNVSNL   Y HLVPRS FQIPIIFLLHTHSLPHHKDKPTNWNTSHALIQSNPLLSL
Sbjct: 1   MISLNVSNLIFRYQHLVPRSPFQIPIIFLLHTHSLPHHKDKPTNWNTSHALIQSNPLLSL 60

Query: 82  LEKCTSMTQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNVF 141
           LEKCTSMTQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAP+PNVF
Sbjct: 61  LEKCTSMTQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPSPNVF 120

Query: 142 SWNVAIRGYLESENPRYAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGH 201
           SWNVAIRGYLESENPR AV LYRKMLRKGGS PDNYSYPLLFKACAGLSLSFTANEILGH
Sbjct: 121 SWNVAIRGYLESENPRNAVLLYRKMLRKGGSTPDNYSYPLLFKACAGLSLSFTANEILGH 180

Query: 202 VVHLGFDSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSIINGYVRCGLADEA 261
           VV LG  SDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNS+INGYVRCGLADEA
Sbjct: 181 VVQLGLYSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSMINGYVRCGLADEA 240

Query: 262 LNLYYKMEELKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEEMGLNLTIPLVNALMDM 321
           LNLYYKME+LKVKPDEVTMIGLVSASAQLENVALGRKLHQF EEMGLNLTIPLVNALMDM
Sbjct: 241 LNLYYKMEDLKVKPDEVTMIGLVSASAQLENVALGRKLHQFTEEMGLNLTIPLVNALMDM 300

Query: 322 YIKCKNIEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALI 381
           YIKCKNIEAA+TLFENMTKKTIVSWTTMVVGYAKCGMLESAV LFNEMPEKDVVPWNALI
Sbjct: 301 YIKCKNIEAAKTLFENMTKKTIVSWTTMVVGYAKCGMLESAVMLFNEMPEKDVVPWNALI 360

Query: 382 GGFVQAK 385
           GGFVQAK
Sbjct: 361 GGFVQAK 367

[Close]

BLAST of Cp4.1LG04g12010 vs. NCBI nr
Match: XP_038878576.1 (pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Benincasa hispida] >XP_038878577.1 pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Benincasa hispida] >XP_038878578.1 pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Benincasa hispida])

HSP 1 Score: 659 bits (1700), Expect = 8.04e-232
Identity = 328/367 (89.37%), Postives = 344/367 (93.73%), Query Frame = 0


Query: 22  MINLNVSNL---YPHLVPRSSFQIPIIFLLHTHSLPHHKDKPTNWNTSHALIQSNPLLSL 81
           MINLNVS L   YPHLV RS FQIP I LLHTHSLPHHKDKPTNWNTSH LIQSNPLLSL
Sbjct: 1   MINLNVSTLIFRYPHLVSRSPFQIPFILLLHTHSLPHHKDKPTNWNTSHVLIQSNPLLSL 60

Query: 82  LEKCTSMTQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNVF 141
           LE+CTSM QMRQIHAQM+STGLISDGFALSRLVAFCAISEWRNLDYCDK+LD+A NPNVF
Sbjct: 61  LERCTSMAQMRQIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDKILDDAANPNVF 120

Query: 142 SWNVAIRGYLESENPRYAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGH 201
           SWNVAIRGYLESENPR A+ LYRKMLRKG SIPDNY+YPLLFK CAGLSLS+TANEILGH
Sbjct: 121 SWNVAIRGYLESENPRNAILLYRKMLRKGRSIPDNYTYPLLFKVCAGLSLSWTANEILGH 180

Query: 202 VVHLGFDSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSIINGYVRCGLADEA 261
           V+ LGF SDLFVHNAIIHVLVS GELLAARKVFD+SCVRDLVSWNSIINGYVRCGLADEA
Sbjct: 181 VLQLGFGSDLFVHNAIIHVLVSSGELLAARKVFDKSCVRDLVSWNSIINGYVRCGLADEA 240

Query: 262 LNLYYKMEELKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEEMGLNLTIPLVNALMDM 321
           L+LYYKM ELKVKPDEVTMIG+VSASAQLEN+ALGRKLHQFIEEMGLNLT+PL NALMDM
Sbjct: 241 LDLYYKMGELKVKPDEVTMIGVVSASAQLENLALGRKLHQFIEEMGLNLTVPLANALMDM 300

Query: 322 YIKCKNIEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALI 381
           YIKCK+IEAA+ LFENMTKKTIVSWTTMVVGYAK G+ ESAVRLFNEMPEKDVVPWNALI
Sbjct: 301 YIKCKDIEAAKILFENMTKKTIVSWTTMVVGYAKFGLFESAVRLFNEMPEKDVVPWNALI 360

Query: 382 GGFVQAK 385
           GGFVQAK
Sbjct: 361 GGFVQAK 367

[Close]

BLAST of Cp4.1LG04g12010 vs. ExPASy TrEMBL
Match: A0A6J1ELP9 (pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111434490 PE=4 SV=1)

HSP 1 Score: 712 bits (1838), Expect = 3.76e-253
Identity = 354/367 (96.46%), Postives = 359/367 (97.82%), Query Frame = 0


Query: 22  MINLNVSNL---YPHLVPRSSFQIPIIFLLHTHSLPHHKDKPTNWNTSHALIQSNPLLSL 81
           MINLN SNL   YPHLVPRS FQ+PIIFLLHTHSLPHHKDKPTNWNTSHALIQSNPLLSL
Sbjct: 1   MINLNASNLIFRYPHLVPRSPFQVPIIFLLHTHSLPHHKDKPTNWNTSHALIQSNPLLSL 60

Query: 82  LEKCTSMTQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNVF 141
           LEKCTSM QMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPN+F
Sbjct: 61  LEKCTSMAQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNIF 120

Query: 142 SWNVAIRGYLESENPRYAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGH 201
           SWNVAIRGYLESENPR AVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGH
Sbjct: 121 SWNVAIRGYLESENPRNAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGH 180

Query: 202 VVHLGFDSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSIINGYVRCGLADEA 261
           VVHLGF SDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNS+INGYVRCGLADEA
Sbjct: 181 VVHLGFYSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSMINGYVRCGLADEA 240

Query: 262 LNLYYKMEELKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEEMGLNLTIPLVNALMDM 321
           LNLYYKME+LKVKPDEVTMIG+VSASAQLENVALGRKLHQFIEEMGLNLTIPLVNALMDM
Sbjct: 241 LNLYYKMEDLKVKPDEVTMIGVVSASAQLENVALGRKLHQFIEEMGLNLTIPLVNALMDM 300

Query: 322 YIKCKNIEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALI 381
           YIKCKNIEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALI
Sbjct: 301 YIKCKNIEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALI 360

Query: 382 GGFVQAK 385
           GGFVQAK
Sbjct: 361 GGFVQAK 367

[Close]

BLAST of Cp4.1LG04g12010 vs. ExPASy TrEMBL
Match: A0A6J1HQQ6 (pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111466501 PE=4 SV=1)

HSP 1 Score: 695 bits (1794), Expect = 1.82e-246
Identity = 349/367 (95.10%), Postives = 354/367 (96.46%), Query Frame = 0


Query: 22  MINLNVSNL---YPHLVPRSSFQIPIIFLLHTHSLPHHKDKPTNWNTSHALIQSNPLLSL 81
           MI+LNVSNL   Y HLVPRS FQIPIIFLLHTHSLPHHKDKPTNWNTSHALIQSNPLLSL
Sbjct: 1   MISLNVSNLIFRYQHLVPRSPFQIPIIFLLHTHSLPHHKDKPTNWNTSHALIQSNPLLSL 60

Query: 82  LEKCTSMTQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNVF 141
           LEKCTSMTQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAP+PNVF
Sbjct: 61  LEKCTSMTQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPSPNVF 120

Query: 142 SWNVAIRGYLESENPRYAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGH 201
           SWNVAIRGYLESENPR AV LYRKMLRKGGS PDNYSYPLLFKACAGLSLSFTANEILGH
Sbjct: 121 SWNVAIRGYLESENPRNAVLLYRKMLRKGGSTPDNYSYPLLFKACAGLSLSFTANEILGH 180

Query: 202 VVHLGFDSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSIINGYVRCGLADEA 261
           VV LG  SDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNS+INGYVRCGLADEA
Sbjct: 181 VVQLGLYSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSMINGYVRCGLADEA 240

Query: 262 LNLYYKMEELKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEEMGLNLTIPLVNALMDM 321
           LNLYYKME+LKVKPDEVTMIGLVSASAQLENVALGRKLHQF EEMGLNLTIPLVNALMDM
Sbjct: 241 LNLYYKMEDLKVKPDEVTMIGLVSASAQLENVALGRKLHQFTEEMGLNLTIPLVNALMDM 300

Query: 322 YIKCKNIEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALI 381
           YIKCKNIEAA+TLFENMTKKTIVSWTTMVVGYAKCGMLESAV LFNEMPEKDVVPWNALI
Sbjct: 301 YIKCKNIEAAKTLFENMTKKTIVSWTTMVVGYAKCGMLESAVMLFNEMPEKDVVPWNALI 360

Query: 382 GGFVQAK 385
           GGFVQAK
Sbjct: 361 GGFVQAK 367

[Close]

BLAST of Cp4.1LG04g12010 vs. ExPASy TrEMBL
Match: A0A5A7UVG6 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00300 PE=4 SV=1)

HSP 1 Score: 654 bits (1688), Expect = 2.58e-230
Identity = 322/367 (87.74%), Postives = 340/367 (92.64%), Query Frame = 0


Query: 22  MINLNVSNL---YPHLVPRSSFQIPIIFLLHTHSLPHHKDKPTNWNTSHALIQSNPLLSL 81
           MINLNVSNL   Y H VPRS+FQIP IFLLHTHSLPHHKDKPTNWN SH LIQSNPLLSL
Sbjct: 1   MINLNVSNLIFRYLHFVPRSTFQIPFIFLLHTHSLPHHKDKPTNWNASHVLIQSNPLLSL 60

Query: 82  LEKCTSMTQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNVF 141
           LE C+SM QM+QIHAQM+STGLISDGFALSRLVAFCAISEWRNLDYCDK+L+NA NPNVF
Sbjct: 61  LEACSSMAQMKQIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDKILNNAANPNVF 120

Query: 142 SWNVAIRGYLESENPRYAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGH 201
           SWN+AIRGY+ESENPRYAV LYR MLRKG + PDNY+YPLLFK CAG SLS TANEILGH
Sbjct: 121 SWNMAIRGYIESENPRYAVLLYRNMLRKGSATPDNYTYPLLFKVCAGFSLSCTANEILGH 180

Query: 202 VVHLGFDSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSIINGYVRCGLADEA 261
           V+ LGFDSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSIINGYVRCGLADEA
Sbjct: 181 VIQLGFDSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSIINGYVRCGLADEA 240

Query: 262 LNLYYKMEELKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEEMGLNLTIPLVNALMDM 321
           L+LYYKM EL V PDEVTMIG+VSASAQLEN+ALGRKLHQFIEEMGLNLT+PL NALMDM
Sbjct: 241 LDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQFIEEMGLNLTVPLANALMDM 300

Query: 322 YIKCKNIEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALI 381
           YIKCKNIEAA+ LFENM KKT+VSWT MVVGYAK G+LESAVRLFNEMPEKDVVPWNALI
Sbjct: 301 YIKCKNIEAAKILFENMPKKTVVSWTIMVVGYAKFGLLESAVRLFNEMPEKDVVPWNALI 360

Query: 382 GGFVQAK 385
           GGFVQAK
Sbjct: 361 GGFVQAK 367

[Close]

BLAST of Cp4.1LG04g12010 vs. ExPASy TrEMBL
Match: A0A1S3BP74 (pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103492040 PE=4 SV=1)

HSP 1 Score: 654 bits (1688), Expect = 2.58e-230
Identity = 322/367 (87.74%), Postives = 340/367 (92.64%), Query Frame = 0


Query: 22  MINLNVSNL---YPHLVPRSSFQIPIIFLLHTHSLPHHKDKPTNWNTSHALIQSNPLLSL 81
           MINLNVSNL   Y H VPRS+FQIP IFLLHTHSLPHHKDKPTNWN SH LIQSNPLLSL
Sbjct: 1   MINLNVSNLIFRYLHFVPRSTFQIPFIFLLHTHSLPHHKDKPTNWNASHVLIQSNPLLSL 60

Query: 82  LEKCTSMTQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNVF 141
           LE C+SM QM+QIHAQM+STGLISDGFALSRLVAFCAISEWRNLDYCDK+L+NA NPNVF
Sbjct: 61  LEACSSMAQMKQIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDKILNNAANPNVF 120

Query: 142 SWNVAIRGYLESENPRYAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGH 201
           SWN+AIRGY+ESENPRYAV LYR MLRKG + PDNY+YPLLFK CAG SLS TANEILGH
Sbjct: 121 SWNMAIRGYIESENPRYAVLLYRNMLRKGSATPDNYTYPLLFKVCAGFSLSCTANEILGH 180

Query: 202 VVHLGFDSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSIINGYVRCGLADEA 261
           V+ LGFDSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSIINGYVRCGLADEA
Sbjct: 181 VIQLGFDSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSIINGYVRCGLADEA 240

Query: 262 LNLYYKMEELKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEEMGLNLTIPLVNALMDM 321
           L+LYYKM EL V PDEVTMIG+VSASAQLEN+ALGRKLHQFIEEMGLNLT+PL NALMDM
Sbjct: 241 LDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQFIEEMGLNLTVPLANALMDM 300

Query: 322 YIKCKNIEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALI 381
           YIKCKNIEAA+ LFENM KKT+VSWT MVVGYAK G+LESAVRLFNEMPEKDVVPWNALI
Sbjct: 301 YIKCKNIEAAKILFENMPKKTVVSWTIMVVGYAKFGLLESAVRLFNEMPEKDVVPWNALI 360

Query: 382 GGFVQAK 385
           GGFVQAK
Sbjct: 361 GGFVQAK 367

[Close]

BLAST of Cp4.1LG04g12010 vs. ExPASy TrEMBL
Match: A0A0A0M2R3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613480 PE=4 SV=1)

HSP 1 Score: 639 bits (1648), Expect = 3.02e-224
Identity = 315/367 (85.83%), Postives = 338/367 (92.10%), Query Frame = 0


Query: 22  MINLNVSNL---YPHLVPRSSFQIPIIFLLHTHSLPHHKDKPTNWNTSHALIQSNPLLSL 81
           MINL+VSNL   YPH VPRS+FQIP IFLLHT SLPHHKDKPTNWN SH LIQSNPLLSL
Sbjct: 1   MINLSVSNLIFRYPHFVPRSTFQIPFIFLLHTRSLPHHKDKPTNWNASHVLIQSNPLLSL 60

Query: 82  LEKCTSMTQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNVF 141
           LE CTSM +M++IHAQM+STGLISDGFALSRLVAFCAISEWRNLDYCDK+L+NA N NVF
Sbjct: 61  LEACTSMAKMKEIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDKILNNAANLNVF 120

Query: 142 SWNVAIRGYLESENPRYAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGH 201
           SWN+AIRGY+ESENP  AV LYR MLRKG +IPDNY+YPLLFK CAG SLS+TANEILGH
Sbjct: 121 SWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILGH 180

Query: 202 VVHLGFDSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSIINGYVRCGLADEA 261
           V+ LGFDSDLFVHNAIIHVLVSCGELLAARK+FDESCVRDLVSWNSIINGYVRCGLADEA
Sbjct: 181 VIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEA 240

Query: 262 LNLYYKMEELKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEEMGLNLTIPLVNALMDM 321
            +LYYKM EL V PDEVTMIG+VSASAQLEN+ALGRKLHQ IEEMGLNLT+PL NALMDM
Sbjct: 241 FDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDM 300

Query: 322 YIKCKNIEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALI 381
           YIKCKNIEAA+ LFENMTKKT+VSWTTMV+GYAK G+LESAVRLFNEMPEKDVV WNALI
Sbjct: 301 YIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALI 360

Query: 382 GGFVQAK 385
           GGFVQAK
Sbjct: 361 GGFVQAK 367

[Close]

BLAST of Cp4.1LG04g12010 vs. TAIR 10
Match: AT2G22410.1 (SLOW GROWTH 1 )

HSP 1 Score: 399.4 bits (1025), Expect = 3.4e-111
Identity = 196/358 (54.75%), Postives = 261/358 (72.91%), Query Frame = 0


Query: 30  LYPHLVPRSSFQIPIIFLLHTHSLPHHKDKPTNWNTSHALIQSNPLLSLLEKCTSMTQMR 89
           L P L P+ +  +       T SLPHH+DKP NWN++H+ +  NPLLSLLEKC  +  ++
Sbjct: 11  LPPPLTPKLNRSLYSHSQRRTRSLPHHRDKPINWNSTHSFVLHNPLLSLLEKCKLLLHLK 70

Query: 90  QIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNVFSWNVAIRGYLE 149
           QI AQM+  GLI D FA SRL+AFCA+SE R LDY  K+L    NPN+FSWNV IRG+ E
Sbjct: 71  QIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIENPNIFSWNVTIRGFSE 130

Query: 150 SENPRYAVFLYRKMLRKG--GSIPDNYSYPLLFKACAGLSLSFTANEILGHVVHLGFDSD 209
           SENP+ +  LY++MLR G   S PD+++YP+LFK CA L LS   + ILGHV+ L  +  
Sbjct: 131 SENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILGHVLKLRLELV 190

Query: 210 LFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSIINGYVRCGLADEALNLYYKMEE 269
             VHNA IH+  SCG++  ARKVFDES VRDLVSWN +INGY + G A++A+ +Y  ME 
Sbjct: 191 SHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMES 250

Query: 270 LKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEEMGLNLTIPLVNALMDMYIKCKNIEA 329
             VKPD+VTMIGLVS+ + L ++  G++ +++++E GL +TIPLVNALMDM+ KC +I  
Sbjct: 251 EGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHE 310

Query: 330 AETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALIGGFVQAK 386
           A  +F+N+ K+TIVSWTTM+ GYA+CG+L+ + +LF++M EKDVV WNA+IGG VQAK
Sbjct: 311 ARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAK 368

[Close]

BLAST of Cp4.1LG04g12010 vs. TAIR 10
Match: AT2G29760.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 268.1 bits (684), Expect = 1.2e-71
Identity = 135/332 (40.66%), Postives = 204/332 (61.45%), Query Frame = 0


Query: 52  SLPHHKDKPTNWNTSHALIQSNPLLSLLEKCTSMTQMRQIHAQMVSTGLISDGFALSRLV 111
           SLP H +  +N N      + +  +SL+E+C S+ Q++Q H  M+ TG  SD ++ S+L 
Sbjct: 11  SLPRHPNF-SNPNQPTTNNERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLF 70

Query: 112 AFCAISEWRNLDYCDKLLDNAPNPNVFSWNVAIRGYLESENPRYAVFLYRKMLRKGGSIP 171
           A  A+S + +L+Y  K+ D  P PN F+WN  IR Y    +P  +++ +  M+ +    P
Sbjct: 71  AMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYP 130

Query: 172 DNYSYPLLFKACAGLSLSFTANEILGHVVHLGFDSDLFVHNAIIHVLVSCGELLAARKVF 231
           + Y++P L KA A +S       + G  V     SD+FV N++IH   SCG+L +A KVF
Sbjct: 131 NKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVF 190

Query: 232 DESCVRDLVSWNSIINGYVRCGLADEALNLYYKMEELKVKPDEVTMIGLVSASAQLENVA 291
                +D+VSWNS+ING+V+ G  D+AL L+ KME   VK   VTM+G++SA A++ N+ 
Sbjct: 191 TTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLE 250

Query: 292 LGRKLHQFIEEMGLNLTIPLVNALMDMYIKCKNIEAAETLFENMTKKTIVSWTTMVVGYA 351
            GR++  +IEE  +N+ + L NA++DMY KC +IE A+ LF+ M +K  V+WTTM+ GYA
Sbjct: 251 FGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYA 310

Query: 352 KCGMLESAVRLFNEMPEKDVVPWNALIGGFVQ 384
                E+A  + N MP+KD+V WNALI  + Q
Sbjct: 311 ISEDYEAAREVLNSMPQKDIVAWNALISAYEQ 341

[Close]

BLAST of Cp4.1LG04g12010 vs. TAIR 10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 225.3 bits (573), Expect = 8.8e-59
Identity = 131/374 (35.03%), Postives = 196/374 (52.41%), Query Frame = 0


Query: 32  PHLVPRSSFQIPIIFLLHTHSLPHHKDKPTNWNTSHALIQSNPLLSLLEKCTSMTQMRQI 91
           P  VP SS+          H LP   D P      +  I+++P LSLL  C ++  +R I
Sbjct: 7   PLTVPSSSYPF--------HFLPSSSDPP------YDSIRNHPSLSLLHNCKTLQSLRII 66

Query: 92  HAQMVSTGLISDGFALSRLVAFCAIS-EWRNLDYCDKLLDNAPNPNVFSWNVAIRGYLES 151
           HAQM+  GL +  +ALS+L+ FC +S  +  L Y   +      PN+  WN   RG+  S
Sbjct: 67  HAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALS 126

Query: 152 ENPRYAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGHVVHLGFDSDLFV 211
            +P  A+ LY  M+   G +P++Y++P + K+CA         +I GHV+ LG D DL+V
Sbjct: 127 SDPVSALKLYVCMISL-GLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYV 186

Query: 212 HNAIIHVLVSCGELLAARKVFDES-------------------------------CVRDL 271
           H ++I + V  G L  A KVFD+S                                V+D+
Sbjct: 187 HTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDV 246

Query: 272 VSWNSIINGYVRCGLADEALNLYYKMEELKVKPDEVTMIGLVSASAQLENVALGRKLHQF 331
           VSWN++I+GY   G   EAL L+  M +  V+PDE TM+ +VSA AQ  ++ LGR++H +
Sbjct: 247 VSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLW 306

Query: 332 IEEMGLNLTIPLVNALMDMYIKCKNIEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESA 374
           I++ G    + +VNAL+D+Y KC  +E A  LFE +  K ++SW T++ GY    + + A
Sbjct: 307 IDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEA 365

[Close]

BLAST of Cp4.1LG04g12010 vs. TAIR 10
Match: AT3G05240.1 (mitochondrial editing factor 19 )

HSP 1 Score: 203.8 bits (517), Expect = 2.7e-52
Identity = 101/309 (32.69%), Postives = 180/309 (58.25%), Query Frame = 0


Query: 74  PLLSLLEKCTSMTQMRQIHAQMVSTGLISDGFALSRLVAFC-AISEWRNLDYCDKLLDNA 133
           P+LS LE C S+ ++ Q+H  M+ + +I +   LSRL+ FC    E  NL Y   + ++ 
Sbjct: 8   PILSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESI 67

Query: 134 PNPNVFSWNVAIRGYLESENPRYAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTA 193
             P+V+ WN  IRGY  S NP  A+  Y++MLRKG S PD +++P + KAC+GL      
Sbjct: 68  DCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYS-PDYFTFPYVLKACSGLRDIQFG 127

Query: 194 NEILGHVVHLGFDSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSIINGYVRC 253
           + + G VV  GF+ +++V   ++H+ + CGE+    +VF++    ++V+W S+I+G+V  
Sbjct: 128 SCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNN 187

Query: 254 GLADEALNLYYKMEELKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEEMG-------- 313
               +A+  + +M+   VK +E  M+ L+ A  + +++  G+  H F++ +G        
Sbjct: 188 NRFSDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFDPYFQSK 247

Query: 314 LNLTIPLVNALMDMYIKCKNIEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFN 373
           +   + L  +L+DMY KC ++  A  LF+ M ++T+VSW +++ GY++ G  E A+ +F 
Sbjct: 248 VGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFL 307

[Close]

BLAST of Cp4.1LG04g12010 vs. TAIR 10
Match: AT4G21065.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 203.0 bits (515), Expect = 4.7e-52
Identity = 111/304 (36.51%), Postives = 173/304 (56.91%), Query Frame = 0


Query: 75  LLSLLEKC---------TSMTQMRQIHAQMVSTGLISDGFALSRLVAFCAIS--EWRNLD 134
           LL ++EKC         +S+T++RQIHA  +  G+      L + + F  +S      + 
Sbjct: 11  LLPMVEKCINLLQTYGVSSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMS 70

Query: 135 YCDKLLDNAPNP-NVFSWNVAIRGYLESENPRYAVFLYRKMLRKGGSIPDNYSYPLLFKA 194
           Y  K+      P NVF WN  IRGY E  N   A  LYR+M   G   PD ++YP L KA
Sbjct: 71  YAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKA 130

Query: 195 CAGLSLSFTANEILGHVVHLGFDSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSW 254
              ++       I   V+  GF S ++V N+++H+  +CG++ +A KVFD+   +DLV+W
Sbjct: 131 VTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAW 190

Query: 255 NSIINGYVRCGLADEALNLYYKMEELKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEE 314
           NS+ING+   G  +EAL LY +M    +KPD  T++ L+SA A++  + LG+++H ++ +
Sbjct: 191 NSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIK 250

Query: 315 MGLNLTIPLVNALMDMYIKCKNIEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRL 367
           +GL   +   N L+D+Y +C  +E A+TLF+ M  K  VSWT+++VG A  G  + A+ L
Sbjct: 251 VGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIEL 310

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g12010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJZ3	4.8e-110	54.75	Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidop...	[more]
O82380	1.7e-70	40.66	Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidop...	[more]
Q9LN01	1.2e-57	35.03	Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop...	[more]
Q9MA95	3.8e-51	32.69	Putative pentatricopeptide repeat-containing protein At3g05240 OS=Arabidopsis th...	[more]
A8MQA3	6.6e-51	36.51	Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX...	[more]

BLAST of Cp4.1LG04g12010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023531862.1	2.27e-259	99.18	pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Cucurbita ...	[more]
XP_022927674.1	7.77e-253	96.46	pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Cucurbita ...	[more]
KAG6588182.1	1.10e-252	96.73	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
XP_022966942.1	3.75e-246	95.10	pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Cucurbita ...	[more]
XP_038878576.1	8.04e-232	89.37	pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Benincasa ...	[more]

BLAST of Cp4.1LG04g12010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ELP9	3.76e-253	96.46	pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Cucurbit...	[more]
A0A6J1HQQ6	1.82e-246	95.10	pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Cucurbit...	[more]
A0A5A7UVG6	2.58e-230	87.74	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3BP74	2.58e-230	87.74	pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Cucumis ...	[more]
A0A0A0M2R3	3.02e-224	85.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613480 PE=4 SV=1	[more]

BLAST of Cp4.1LG04g12010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G22410.1	3.4e-111	54.75	SLOW GROWTH 1	[more]
AT2G29760.1	1.2e-71	40.66	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G08070.1	8.8e-59	35.03	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G05240.1	2.7e-52	32.69	mitochondrial editing factor 19	[more]
AT4G21065.1	4.7e-52	36.51	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 135..184 e-value: 2.2E-8 score: 34.2 coord: 238..281 e-value: 1.0E-9 score: 38.4
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 341..370 e-value: 1.6E-8 score: 34.2 coord: 313..338 e-value: 0.007 score: 16.5 coord: 210..233 e-value: 0.91 score: 9.9
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 313..337 e-value: 0.0023 score: 16.0 coord: 341..374 e-value: 2.9E-8 score: 31.4 coord: 240..274 e-value: 1.4E-8 score: 32.4
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 136..170 score: 9.240434
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 238..272 score: 12.879585
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 339..373 score: 12.452094
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 277..390 e-value: 8.2E-24 score: 85.9
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 64..233 e-value: 5.0E-17 score: 64.3
None	No IPR available	PANTHER	PTHR47925:SF92	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 57..387
None	No IPR available	PANTHER	PTHR47925	OS01G0913400 PROTEIN-RELATED	coord: 57..387

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g12010.1	Cp4.1LG04g12010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1900865	chloroplast RNA modification
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0005515	protein binding