Cp4.1LG04g10440 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTTTATTATATTGTCTCAGCCCTTACTTACAGAAACAACATACATAGTTTTACATAGTCCCAGAATTAAAACCCTTCACTTTTCAAGAAGCATTTTAAGAGTGGAGTGTTTTAAATCTTTCCGGAAGCATTTCACCTTTCATGACTACAATTAGCTACCATAACTCTAAATTATCATGTATCATACATTTGCAACCATCTAATAATAAATGAAGTTTGATTTTCTTTAATGTGACATGAATGGTAACGTTTTGTTCCCATCTCAGTTGATATAAGGTAATCGTATAAGGTAATCGTAAAAGGGGAGTGGGGTGTTTTAAATCTTTAATTATTCCTTCCTCAAAGGAAGGTTGATGATGTAGATGAACATAAAAGAATGGGAATAATGTCATGACTTTATGAAGCAAAAGTAAGGAAGATGTTACTAGAGAATGACAGAGAGAGGTGGGGATTCAGTACGTTGTGGATATGTCTTCCAAATTTCAGACCTTATCTTATTTCCTAGTAATATGGGAGAAGGCAACACAAAACTCAGGCCCCATCTATTTTTTTTTTATCATCAATTTTATCTTATAATAAAACGATGATAATTATTGATTGATGATAAAAGGGTTGGGTTTTTGGATAAAGCAACAAAAAGGAGAATTATCTAACTTTTATGCTACATTTAATTATAATCTAAGCTTTCCACGCATATATAAATAGCTTCTCAAACGCACATACTAAGGTTGCAATATATAATACCTTTCTTCTTCTTCTCCTTCATTTGATTCCAATGGGAGAATTGCAAGAAACTCAACGTCTTCATGTTGATGAAGCTCAGAATGGTTGTTGCAGAACGATCATGGAAGATTGTGAAGCTTCAATGGAGTCTTCCATGGAGTTTAGTTCTGCAAATTCTGAAGCATCTTCTTCTTTGGAGATGGTGGAAGATGCCCTTTCTACAGTTTCGAATTCTTCATTATCATCTTCTTCTTCTTCTTCTTCAAATGGACCTCTTTTTGAGCTATCAGAGCTTATGGTTCATCTTCCGATGAAGTAAGTAATGGGATAAATTATAAATAAAAAAAACATACCCTTTTCATTATGTTTCTTTGGAGACACGTTTTGATTGAAAGAATGGATCAATATGACTAATGGGAAATTTTGAAATGGTTTTGTGCTTGCAGGAGAGGGCTGTCTAAATATTATGATGGCAAATCAGAATCTTTCACATCTCTGGCAAGTGTAGAGAGATTAGAAGATTTAGCGAAGAGGGTTTCTCCAATTAGAAAAAAGTTCAAATCTTGTATGAGTGTTGGAGGAGGATTTGATGGCCATAAATCCATTGTCCCAAGGACTACCATAGCCAAGAAAGCTTCAAGATCAAGAGGGAAAAGTAGTCTGCTTTGTGGTTCTAGGTCTGCAGTTTCTGTGAATTGGCACTGATTATTTGCTACCCTTGAATGACTTGACTTGTAAATTTTCAAGCTCATTTCTCCCCCTCTTTTATTCTTTTATAAAGAATTTTATAACTTAATATGATAACCTTCCAGAAAACGAGGAGAATAAATTTGTAGAACCTGCTATCAAATCTGGAAAATTCACATTGGACAAAATAACAGCGTATAAAGATAATCCTAAAGATGAGTTATAAATCCTCCTATGTTGGATGAAAGTCACATATCAGCTAATTTAGAGAATGATCATGAGTTTATAATCAAATAATGCTATCAACATTGGTATAAGGATTTTTGGGGAAGCCCAACGCAAATCTATAAGAGTTTATGTTTAAAGTCGATAATATCATACCATTGTAGAGAGTCGTGTTCATCTAACACCCTCCACTCCTAAGAACACTTTTGATTTTGTTTATAACTGATTCTGAGCAACCTGATTCAATATCTTGGACACCGGGGGGAAGTGGTAAATGTGACGAGCCAATTAATGAAGCAAAATAAAGGGCCTTCACAGGGTCAATAGAAATATAAATTAAAGGCCAAAGCTTTATAAGCTTAAACCAAACTAAAACACTACAATGTTCTGTATGGATCTTTGTTTTTCTTCTTTCCTCGCTCAGGCGCAACTCTAATAATGTCGGAAAAGATAGCAGAGATGGATAGTGAAGTGACGGAAATCAAAACAGTCTTCTGAAAGGGGATCTGCAAATTGTGCTTTTTAGAGGGTTATATTTTGTAAACAGGTACAATTCCGAGAAGATGGAAGCATTTCCTCATCACAGTGCCTGTGGCTTCACAGAGCAGGAGCCTGCTGGTTTCTTCAGCTGACCCAACGACCTGACAAATATCAGACCATCAAACATTGATGAAGTTTTAACTTTTTGCGAGAAAACGTCGGTGGCATTTAGAATGCATTTATGTCGAGGTAGTACAAATTTAGTGAGCTTTTTCCAGCTCATTCCGTAGGATGGGAAAAGATCAAAAACGCCTTGATGCAAATGGCACAAACAAGCAAAATGATTAAGAAAGGGAGCTTTACATTCTAGGTTATTAAAGGTAACTAAGTTGATAACCAAGGCATAATTAGCTGCCACGAGCTATCAATCGACAAGAGCTAATGATTTAGAAATTATCCGACATGAATTAGTGGGATAATGATATTATGCATAAAGAATGAGATAATGGTCTCAAAAAGTCGGCTATACCTGGCAATTGGAATAGAATTTTTTCGTAAATATTTCGGATAAGTTGTACAGGTATTCACATAACACATTCGGCAACAGATTGGTGCATGCTTCCTCCACAACCTAGTGTAGAGAAAATGGAAAAGTAATTATCACGCGATAACTTGTATCAAATATAAAATGGTTCGAGTCAGACGCAAAGCCACAGTTACTCAGGTCAATCAAATGTATGTTTTCTTTACCTCGGCAAATTGTAACAAATGAAGCCCCAATACACGCTCGTCCTCGTGCTCCAACACAATTGTTCCCGTCTATCAAATAACGGTAGACTTAATTTAGAAATAAACGCAAAAGTGCTGCTCCAGTCCAACTAAAGTCTTGAGAAGAAAATGTTCTGGAATTTGGAAGAAAACTTACTTTTTTCAACTCCTCTATATTTTTACCAGATTTTCTGATGATTGAACAGATACGAGCATGGGCATACAGCAAATACACAGCAGTGTTGCCCT TTTTTATTATATTGTCTCAGCCCTTACTTACAGAAACAACATACATAGTTTTACATAGTCCCAGAATTAAAACCCTTCACTTTTCAAGAAGCATTTTAAGAGTGGAGTGTTTTAAATCTTTCCGGAAGCATTTCACCTTTCATGACTACAATTAGCTACCATAACTCTAAATTATCATGTATCATACATTTGCAACCATCTAATAATAAATGAAGTTTGATTTTCTTTAATGTGACATGAATGGTAACGTTTTGTTCCCATCTCAGTTGATATAAGGTAATCGTATAAGGTAATCGTAAAAGGGGAGTGGGGTGTTTTAAATCTTTAATTATTCCTTCCTCAAAGGAAGGTTGATGATGTAGATGAACATAAAAGAATGGGAATAATGTCATGACTTTATGAAGCAAAAGTAAGGAAGATGTTACTAGAGAATGACAGAGAGAGGTGGGGATTCAGTACGTTGTGGATATGTCTTCCAAATTTCAGACCTTATCTTATTTCCTAGTAATATGGGAGAAGGCAACACAAAACTCAGGCCCCATCTATTTTTTTTTTATCATCAATTTTATCTTATAATAAAACGATGATAATTATTGATTGATGATAAAAGGGTTGGGTTTTTGGATAAAGCAACAAAAAGGAGAATTATCTAACTTTTATGCTACATTTAATTATAATCTAAGCTTTCCACGCATATATAAATAGCTTCTCAAACGCACATACTAAGGTTGCAATATATAATACCTTTCTTCTTCTTCTCCTTCATTTGATTCCAATGGGAGAATTGCAAGAAACTCAACGTCTTCATGTTGATGAAGCTCAGAATGGTTGTTGCAGAACGATCATGGAAGATTGTGAAGCTTCAATGGAGTCTTCCATGGAGTTTAGTTCTGCAAATTCTGAAGCATCTTCTTCTTTGGAGATGGTGGAAGATGCCCTTTCTACAGTTTCGAATTCTTCATTATCATCTTCTTCTTCTTCTTCTTCAAATGGACCTCTTTTTGAGCTATCAGAGCTTATGGTTCATCTTCCGATGAAGAGAGGGCTGTCTAAATATTATGATGGCAAATCAGAATCTTTCACATCTCTGGCAAGTGTAGAGAGATTAGAAGATTTAGCGAAGAGGGTTTCTCCAATTAGAAAAAAGTTCAAATCTTGTATGAGTGTTGGAGGAGGATTTGATGGCCATAAATCCATTGTCCCAAGGACTACCATAGCCAAGAAAGCTTCAAGATCAAGAGGGAAAAGTAGTCTGCTTTGTGGTTCTAGGTCTGCAGTTTCTGTGAATTGGCACTGATTATTTGCTACCCTTGAATGACTTGACTTGTAAATTTTCAAGCTCATTTCTCCCCCTCTTTTATTCTTTTATAAAGAATTTTATAACTTAATATGATAACCTTCCAGAAAACGAGGAGAATAAATTTGTAGAACCTGCTATCAAATCTGGAAAATTCACATTGGACAAAATAACAGCGTATAAAGATAATCCTAAAGATGAGTTATAAATCCTCCTATGTTGGATGAAAGTCACATATCAGCTAATTTAGAGAATGATCATGAGTTTATAATCAAATAATGCTATCAACATTGGTATAAGGATTTTTGGGGAAGCCCAACGCAAATCTATAAGAGTTTATGTTTAAAGTCGATAATATCATACCATTGTAGAGAGTCGTGTTCATCTAACACCCTCCACTCCTAAGAACACTTTTGATTTTGTTTATAACTGATTCTGAGCAACCTGATTCAATATCTTGGACACCGGGGGGAAGTGGTAAATGTGACGAGCCAATTAATGAAGCAAAATAAAGGGCCTTCACAGGGTCAATAGAAATATAAATTAAAGGCCAAAGCTTTATAAGCTTAAACCAAACTAAAACACTACAATGTTCTGTATGGATCTTTGTTTTTCTTCTTTCCTCGCTCAGGCGCAACTCTAATAATGTCGGAAAAGATAGCAGAGATGGATAGTGAAGTGACGGAAATCAAAACAGTCTTCTGAAAGGGGATCTGCAAATTGTGCTTTTTAGAGGGTTATATTTTGTAAACAGGTACAATTCCGAGAAGATGGAAGCATTTCCTCATCACAGTGCCTGTGGCTTCACAGAGCAGGAGCCTGCTGGTTTCTTCAGCTGACCCAACGACCTGACAAATATCAGACCATCAAACATTGATGAAGTTTTAACTTTTTGCGAGAAAACGTCGGTGGCATTTAGAATGCATTTATGTCGAGGTAGTACAAATTTAGTGAGCTTTTTCCAGCTCATTCCGTAGGATGGGAAAAGATCAAAAACGCCTTGATGCAAATGGCACAAACAAGCAAAATGATTAAGAAAGGGAGCTTTACATTCTAGGTTATTAAAGGTAACTAAGTTGATAACCAAGGCATAATTAGCTGCCACGAGCTATCAATCGACAAGAGCTAATGATTTAGAAATTATCCGACATGAATTAGTGGGATAATGATATTATGCATAAAGAATGAGATAATGGTCTCAAAAAGTCGGCTATACCTGGCAATTGGAATAGAATTTTTTCGTAAATATTTCGGATAAGTTGTACAGGTATTCACATAACACATTCGGCAACAGATTGGTGCATGCTTCCTCCACAACCTAGTGTAGAGAAAATGGAAAAGTAATTATCACGCGATAACTTGTATCAAATATAAAATGGTTCGAGTCAGACGCAAAGCCACAGTTACTCAGGTCAATCAAATGTATGTTTTCTTTACCTCGGCAAATTGTAACAAATGAAGCCCCAATACACGCTCGTCCTCGTGCTCCAACACAATTGTTCCCGTCTATCAAATAACGGTAGACTTAATTTAGAAATAAACGCAAAAGTGCTGCTCCAGTCCAACTAAAGTCTTGAGAAGAAAATGTTCTGGAATTTGGAAGAAAACTTACTTTTTTCAACTCCTCTATATTTTTACCAGATTTTCTGATGATTGAACAGATACGAGCATGGGCATACAGCAAATACACAGCAGTGTTGCCCT ATGGGAGAATTGCAAGAAACTCAACGTCTTCATGTTGATGAAGCTCAGAATGGTTGTTGCAGAACGATCATGGAAGATTGTGAAGCTTCAATGGAGTCTTCCATGGAGTTTAGTTCTGCAAATTCTGAAGCATCTTCTTCTTTGGAGATGGTGGAAGATGCCCTTTCTACAGTTTCGAATTCTTCATTATCATCTTCTTCTTCTTCTTCTTCAAATGGACCTCTTTTTGAGCTATCAGAGCTTATGGTTCATCTTCCGATGAAGAGAGGGCTGTCTAAATATTATGATGGCAAATCAGAATCTTTCACATCTCTGGCAAGTGTAGAGAGATTAGAAGATTTAGCGAAGAGGGTTTCTCCAATTAGAAAAAAGTTCAAATCTTGTATGAGTGTTGGAGGAGGATTTGATGGCCATAAATCCATTGTCCCAAGGACTACCATAGCCAAGAAAGCTTCAAGATCAAGAGGGAAAAGTAGTCTGCTTTGTGGTTCTAGGTCTGCAGTTTCTGTGAATTGGCACTGA MGELQETQRLHVDEAQNGCCRTIMEDCEASMESSMEFSSANSEASSSLEMVEDALSTVSNSSLSSSSSSSSNGPLFELSELMVHLPMKRGLSKYYDGKSESFTSLASVERLEDLAKRVSPIRKKFKSCMSVGGGFDGHKSIVPRTTIAKKASRSRGKSSLLCGSRSAVSVNWH Homology
BLAST of Cp4.1LG04g10440 vs. NCBI nr
Match: XP_023530218.1 (uncharacterized protein LOC111792849 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 321 bits (822), Expect = 4.27e-110 Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0
BLAST of Cp4.1LG04g10440 vs. NCBI nr
Match: XP_022931767.1 (uncharacterized protein LOC111438035 [Cucurbita moschata]) HSP 1 Score: 304 bits (779), Expect = 1.43e-103 Identity = 165/173 (95.38%), Postives = 169/173 (97.69%), Query Frame = 0
BLAST of Cp4.1LG04g10440 vs. NCBI nr
Match: KAG6588007.1 (hypothetical protein SDJN03_16572, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021901.1 hypothetical protein SDJN02_15629, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 303 bits (775), Expect = 5.83e-103 Identity = 165/173 (95.38%), Postives = 168/173 (97.11%), Query Frame = 0
BLAST of Cp4.1LG04g10440 vs. NCBI nr
Match: XP_023005492.1 (uncharacterized protein LOC111498459 [Cucurbita maxima]) HSP 1 Score: 298 bits (763), Expect = 3.93e-101 Identity = 162/173 (93.64%), Postives = 167/173 (96.53%), Query Frame = 0
BLAST of Cp4.1LG04g10440 vs. NCBI nr
Match: XP_022960918.1 (uncharacterized protein LOC111461578 [Cucurbita moschata]) HSP 1 Score: 237 bits (604), Expect = 7.49e-77 Identity = 140/182 (76.92%), Postives = 151/182 (82.97%), Query Frame = 0
BLAST of Cp4.1LG04g10440 vs. ExPASy TrEMBL
Match: A0A6J1EUM1 (uncharacterized protein LOC111438035 OS=Cucurbita moschata OX=3662 GN=LOC111438035 PE=4 SV=1) HSP 1 Score: 304 bits (779), Expect = 6.93e-104 Identity = 165/173 (95.38%), Postives = 169/173 (97.69%), Query Frame = 0
BLAST of Cp4.1LG04g10440 vs. ExPASy TrEMBL
Match: A0A6J1KT99 (uncharacterized protein LOC111498459 OS=Cucurbita maxima OX=3661 GN=LOC111498459 PE=4 SV=1) HSP 1 Score: 298 bits (763), Expect = 1.90e-101 Identity = 162/173 (93.64%), Postives = 167/173 (96.53%), Query Frame = 0
BLAST of Cp4.1LG04g10440 vs. ExPASy TrEMBL
Match: A0A6J1HAD2 (uncharacterized protein LOC111461578 OS=Cucurbita moschata OX=3662 GN=LOC111461578 PE=4 SV=1) HSP 1 Score: 237 bits (604), Expect = 3.63e-77 Identity = 140/182 (76.92%), Postives = 151/182 (82.97%), Query Frame = 0
BLAST of Cp4.1LG04g10440 vs. ExPASy TrEMBL
Match: A0A6J1CTH8 (uncharacterized protein LOC111014601 OS=Momordica charantia OX=3673 GN=LOC111014601 PE=4 SV=1) HSP 1 Score: 226 bits (575), Expect = 7.44e-73 Identity = 136/173 (78.61%), Postives = 144/173 (83.24%), Query Frame = 0
BLAST of Cp4.1LG04g10440 vs. ExPASy TrEMBL
Match: A0A6J1JFM4 (uncharacterized protein LOC111485297 OS=Cucurbita maxima OX=3661 GN=LOC111485297 PE=4 SV=1) HSP 1 Score: 211 bits (537), Expect = 3.03e-67 Identity = 123/174 (70.69%), Postives = 139/174 (79.89%), Query Frame = 0
BLAST of Cp4.1LG04g10440 vs. TAIR 10
Match: AT5G56550.1 (oxidative stress 3 ) HSP 1 Score: 80.5 bits (197), Expect = 1.5e-15 Identity = 65/148 (43.92%), Postives = 84/148 (56.76%), Query Frame = 0
BLAST of Cp4.1LG04g10440 vs. TAIR 10
Match: AT4G26288.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: oxidative stress 3 (TAIR:AT5G56550.1); Has 289 Blast hits to 232 proteins in 41 species: Archae - 0; Bacteria - 12; Metazoa - 36; Fungi - 21; Plants - 151; Viruses - 2; Other Eukaryotes - 67 (source: NCBI BLink). ) HSP 1 Score: 76.6 bits (187), Expect = 2.1e-14 Identity = 63/131 (48.09%), Postives = 81/131 (61.83%), Query Frame = 0
BLAST of Cp4.1LG04g10440 vs. TAIR 10
Match: AT3G03170.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24890.1); Has 184 Blast hits to 184 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 184; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 46.6 bits (109), Expect = 2.4e-05 Identity = 22/39 (56.41%), Postives = 28/39 (71.79%), Query Frame = 0
BLAST of Cp4.1LG04g10440 vs. TAIR 10
Match: AT5G21940.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 42.4 bits (98), Expect = 4.4e-04 Identity = 45/151 (29.80%), Postives = 74/151 (49.01%), Query Frame = 0
BLAST of Cp4.1LG04g10440 vs. TAIR 10
Match: AT4G31510.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24550.1); Has 205 Blast hits to 205 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 3; Plants - 187; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). ) HSP 1 Score: 42.0 bits (97), Expect = 5.8e-04 Identity = 34/89 (38.20%), Postives = 47/89 (52.81%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|