Cp4.1LG04g09050 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g09050
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG04: 10300475 .. 10301815 (+)
RNA-Seq Expression	Cp4.1LG04g09050
Synteny	Cp4.1LG04g09050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAGGCATCAAGCATTCACGAGTTCCTCATATCTCTCCTTCAATTCCGACCACCTTAAGGAATCCAAAACTGTCTCAAATTTGGTGTCTTTAGCTTACTTTCTACGCTTTGATCTCCTCTTATAAACACAAAAAAAAAAAACACTTGTTTGGATCCATAAATGAGGCCCATTCATGTTCTTGCTTCTCTTCTCCTTATGTTCTTCCTCTTTGATCACTCTCAAGGTATGCAACTTTTTTGCAATTTCTTTTAGATGGGTTTTGTTGTTTGATGCTCTTATATGCTTTAATGGAAATGGTTTGTGTTTGTGAAGGTGTTCCCTTGGGGAATGGGCTGATGAAGCCACTGCTGCTAGGAACACCACTTGTGAGTTTTCCCTTTAAAGCTTTCTCTTCCAAAATCTCTTATCTTGATGGCTAATATATATTAACTATAGGAAGAGGAGGTTCCATTGGTGGAAGAAAATGGGCATTGTAATTCAGGTTGGGATTAAGTTTTGTGCATTAAATTTTGCCCAAACGGGACATATTCCACTCTTTATTATGCATCACATCGCATATCTAAAGTGGGTTTGACATTTATGATGCAGGGAAAAGTAGAAAACTTCTGATGGAAACTTCGCCATCATCTCCAACCCCTTCCACAACAAGGGTTAGTCTTAGTCTTAGTCATCTCGGATTTTAAAACCTAACAAATTTACGTGAAGTTCATACAAGAACAACAATTGATTAGGTTGGAAATGACCAACGATCGAAATATGTCGAAACAAGAAAAAGGAACAACTTGAGAGGAGAGAGCTTTTAAAACAAAGAAATCTTAAACACTTAGCTTTTCAATTCTTTTCGTTATTTCGACATATTTCGATCGTGGGTCATTTCCAACATTTGGTATCAGAGTCATGCCCGTAAATTAGCAATGTGAATAGAATTTTCAAGTGTCGAACAAAGGATAAGGACTCCAGAAAAGGAGTCGAGCCTCAGGAAAGTTGTTCAAAGGATCCATAGGCTTCAGAGGAGGCTCTATAGTGTACTTTATTCGATGAGAATTGTTAAGAGGGAGCCACACATTGACTAATAAATAAAAAATACCTGTCAAGCAAAGTCATGAGAGCTTATGTTCAAAGTAGACAGTTATCACTAAAGGGTTGTGTGGTTTGATGTTCAGAACAAAGAAGGAAACAAAAAAGGGAACCCGGGCATGAAAGAACAGGACATGAAGAGATCAAAGGCAGTTTCTGAGAATCTTGAGGCAGGGCATGAAGAACAACAACATTATCCAGACCTCATAGAGATAGCAGAAATGGACTATTCTCCAGCAACAAGAAAGCCTCCAATACATAAC

mRNA sequence

CAAGGCATCAAGCATTCACGAGTTCCTCATATCTCTCCTTCAATTCCGACCACCTTAAGGAATCCAAAACTGTCTCAAATTTGGTGTCTTTAGCTTACTTTCTACGCTTTGATCTCCTCTTATAAACACAAAAAAAAAAAACACTTGTTTGGATCCATAAATGAGGCCCATTCATGTTCTTGCTTCTCTTCTCCTTATGTTCTTCCTCTTTGATCACTCTCAAGGTGTTCCCTTGGGGAATGGGCTGATGAAGCCACTGCTGCTAGGAACACCACTTGAAGAGGAGGTTCCATTGGTGGAAGAAAATGGGCATTGTAATTCAGGGAAAAGTAGAAAACTTCTGATGGAAACTTCGCCATCATCTCCAACCCCTTCCACAACAAGGGCAGTTTCTGAGAATCTTGAGGCAGGGCATGAAGAACAACAACATTATCCAGACCTCATAGAGATAGCAGAAATGGACTATTCTCCAGCAACAAGAAAGCCTCCAATACATAAC

Coding sequence (CDS)

ATGAGGCCCATTCATGTTCTTGCTTCTCTTCTCCTTATGTTCTTCCTCTTTGATCACTCTCAAGGTGTTCCCTTGGGGAATGGGCTGATGAAGCCACTGCTGCTAGGAACACCACTTGAAGAGGAGGTTCCATTGGTGGAAGAAAATGGGCATTGTAATTCAGGGAAAAGTAGAAAACTTCTGATGGAAACTTCGCCATCATCTCCAACCCCTTCCACAACAAGGGCAGTTTCTGAGAATCTTGAGGCAGGGCATGAAGAACAACAACATTATCCAGACCTCATAGAGATAGCAGAAATGGACTATTCTCCAGCAACAAGAAAGCCTCCAATACATAAC

Protein sequence

MRPIHVLASLLLMFFLFDHSQGVPLGNGLMKPLLLGTPLEEEVPLVEENGHCNSGKSRKLLMETSPSSPTPSTTRAVSENLEAGHEEQQHYPDLIEIAEMDYSPATRKPPIHN

Homology

[Close]

BLAST of Cp4.1LG04g09050 vs. NCBI nr
Match: XP_023531425.1 (uncharacterized protein LOC111793666 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 216 bits (551), Expect = 2.04e-70
Identity = 113/134 (84.33%), Postives = 113/134 (84.33%), Query Frame = 0


Query: 1   MRPIHVLASLLLMFFLFDHSQGVPLGNGLMKPLLLGTPLEEEVPLVEENGHCNSGKSRKL 60
           MRPIHVLASLLLMFFLFDHSQGVPLGNGLMKPLLLGTPLEEEVPLVEENGHCNSGKSRKL
Sbjct: 1   MRPIHVLASLLLMFFLFDHSQGVPLGNGLMKPLLLGTPLEEEVPLVEENGHCNSGKSRKL 60

Query: 61  LMETSPSSPTPSTTR---------------------AVSENLEAGHEEQQHYPDLIEIAE 113
           LMETSPSSPTPSTTR                     AVSENLEAGHEEQQHYPDLIEIAE
Sbjct: 61  LMETSPSSPTPSTTRNKEGNKKGNPGMKEQDMKRSKAVSENLEAGHEEQQHYPDLIEIAE 120

[Close]

BLAST of Cp4.1LG04g09050 vs. NCBI nr
Match: XP_023001652.1 (uncharacterized protein LOC111495723 [Cucurbita maxima])

HSP 1 Score: 211 bits (538), Expect = 1.96e-68
Identity = 110/134 (82.09%), Postives = 112/134 (83.58%), Query Frame = 0


Query: 1   MRPIHVLASLLLMFFLFDHSQGVPLGNGLMKPLLLGTPLEEEVPLVEENGHCNSGKSRKL 60
           MRP+HVLASLLLMFFLFDHSQGV LGNGLMKPLLLGTPLEEEVPLVEENGHCNSGKSRKL
Sbjct: 1   MRPVHVLASLLLMFFLFDHSQGVRLGNGLMKPLLLGTPLEEEVPLVEENGHCNSGKSRKL 60

Query: 61  LMETSPSSPTPSTTR---------------------AVSENLEAGHEEQQHYPDLIEIAE 113
           LMETSPSSPTPSTTR                     AVSENLEAGHE+QQHYPDLIEIAE
Sbjct: 61  LMETSPSSPTPSTTRNKEGNKKGNPGMKEQDMKSSKAVSENLEAGHEQQQHYPDLIEIAE 120

[Close]

BLAST of Cp4.1LG04g09050 vs. NCBI nr
Match: XP_022933409.1 (uncharacterized protein LOC111440836 [Cucurbita moschata])

HSP 1 Score: 207 bits (528), Expect = 6.56e-67
Identity = 110/134 (82.09%), Postives = 111/134 (82.84%), Query Frame = 0


Query: 1   MRPIHVLASLLLMFFLFDHSQGVPLGNGLMKPLLLGTPLEEEVPLVEENGHCNSGKSRKL 60
           MRPIHVLASLLLMFFLFDHSQGV LGNGLMKPLLLGTPLEEEVPLVEENGH NSGKSRKL
Sbjct: 1   MRPIHVLASLLLMFFLFDHSQGVRLGNGLMKPLLLGTPLEEEVPLVEENGHWNSGKSRKL 60

Query: 61  LMETSPSSPTPSTTR---------------------AVSENLEAGHEEQQHYPDLIEIAE 113
           LMETSPSSPTPSTTR                     AVSENLEAGHE+QQHYPDLIEIAE
Sbjct: 61  LMETSPSSPTPSTTRNKEGNKKGNQGMKEQDMKSSKAVSENLEAGHEQQQHYPDLIEIAE 120

[Close]

BLAST of Cp4.1LG04g09050 vs. NCBI nr
Match: KAG6587859.1 (hypothetical protein SDJN03_16424, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 187 bits (474), Expect = 7.59e-59
Identity = 98/122 (80.33%), Postives = 99/122 (81.15%), Query Frame = 0


Query: 13  MFFLFDHSQGVPLGNGLMKPLLLGTPLEEEVPLVEENGHCNSGKSRKLLMETSPSSPTPS 72
           MFFLFDHSQGV LGNGLMKPLLLGTPLEEEVPLVEENGH NSGKSRKLLMETSPSSPTPS
Sbjct: 1   MFFLFDHSQGVRLGNGLMKPLLLGTPLEEEVPLVEENGHWNSGKSRKLLMETSPSSPTPS 60

Query: 73  TTR---------------------AVSENLEAGHEEQQHYPDLIEIAEMDYSPATRKPPI 113
           TTR                     AVSENLEAGHE+QQHYPDLIEIAEMDYSPATRKPPI
Sbjct: 61  TTRNKEGNKKGNQGMKEQDMKSSKAVSENLEAGHEQQQHYPDLIEIAEMDYSPATRKPPI 120

[Close]

BLAST of Cp4.1LG04g09050 vs. NCBI nr
Match: KAG7021747.1 (hypothetical protein SDJN02_15474, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 169 bits (427), Expect = 1.30e-51
Identity = 89/114 (78.07%), Postives = 91/114 (79.82%), Query Frame = 0


Query: 21  QGVPLGNGLMKPLLLGTPLEEEVPLVEENGHCNSGKSRKLLMETSPSSPTPSTTR----- 80
           +GV LGNGLMKPLLLGTPLEEEVPLVEENGH NSGKSRKLLMETSPSSPTPSTTR     
Sbjct: 14  EGVRLGNGLMKPLLLGTPLEEEVPLVEENGHWNSGKSRKLLMETSPSSPTPSTTRNKEGN 73

Query: 81  ----------------AVSENLEAGHEEQQHYPDLIEIAEMDYSPATRKPPIHN 113
                           AVSENLEAGHE+QQHYPDLIEIAEMDYSPATRKPPIHN
Sbjct: 74  KKGNQGMKEQDMKSSKAVSENLEAGHEQQQHYPDLIEIAEMDYSPATRKPPIHN 127

[Close]

BLAST of Cp4.1LG04g09050 vs. ExPASy TrEMBL
Match: A0A6J1KH80 (uncharacterized protein LOC111495723 OS=Cucurbita maxima OX=3661 GN=LOC111495723 PE=4 SV=1)

HSP 1 Score: 211 bits (538), Expect = 9.49e-69
Identity = 110/134 (82.09%), Postives = 112/134 (83.58%), Query Frame = 0


Query: 1   MRPIHVLASLLLMFFLFDHSQGVPLGNGLMKPLLLGTPLEEEVPLVEENGHCNSGKSRKL 60
           MRP+HVLASLLLMFFLFDHSQGV LGNGLMKPLLLGTPLEEEVPLVEENGHCNSGKSRKL
Sbjct: 1   MRPVHVLASLLLMFFLFDHSQGVRLGNGLMKPLLLGTPLEEEVPLVEENGHCNSGKSRKL 60

Query: 61  LMETSPSSPTPSTTR---------------------AVSENLEAGHEEQQHYPDLIEIAE 113
           LMETSPSSPTPSTTR                     AVSENLEAGHE+QQHYPDLIEIAE
Sbjct: 61  LMETSPSSPTPSTTRNKEGNKKGNPGMKEQDMKSSKAVSENLEAGHEQQQHYPDLIEIAE 120

[Close]

BLAST of Cp4.1LG04g09050 vs. ExPASy TrEMBL
Match: A0A6J1EZP7 (uncharacterized protein LOC111440836 OS=Cucurbita moschata OX=3662 GN=LOC111440836 PE=4 SV=1)

HSP 1 Score: 207 bits (528), Expect = 3.18e-67
Identity = 110/134 (82.09%), Postives = 111/134 (82.84%), Query Frame = 0


Query: 1   MRPIHVLASLLLMFFLFDHSQGVPLGNGLMKPLLLGTPLEEEVPLVEENGHCNSGKSRKL 60
           MRPIHVLASLLLMFFLFDHSQGV LGNGLMKPLLLGTPLEEEVPLVEENGH NSGKSRKL
Sbjct: 1   MRPIHVLASLLLMFFLFDHSQGVRLGNGLMKPLLLGTPLEEEVPLVEENGHWNSGKSRKL 60

Query: 61  LMETSPSSPTPSTTR---------------------AVSENLEAGHEEQQHYPDLIEIAE 113
           LMETSPSSPTPSTTR                     AVSENLEAGHE+QQHYPDLIEIAE
Sbjct: 61  LMETSPSSPTPSTTRNKEGNKKGNQGMKEQDMKSSKAVSENLEAGHEQQQHYPDLIEIAE 120

[Close]

BLAST of Cp4.1LG04g09050 vs. ExPASy TrEMBL
Match: A0A6J1C2H1 (uncharacterized protein LOC111007333 OS=Momordica charantia OX=3673 GN=LOC111007333 PE=4 SV=1)

HSP 1 Score: 117 bits (294), Expect = 2.36e-31
Identity = 78/157 (49.68%), Postives = 90/157 (57.32%), Query Frame = 0


Query: 1   MRPIHVLASLLLMF-FLFDHSQGVPLGNGLMKPL-LLGTPLEEEVPLVEEN--------- 60
           MR  +VLASLLL+F FL + +QG+ LGNG++KP+  L   L EE PL+EE          
Sbjct: 1   MRSTNVLASLLLIFSFLSNQAQGIRLGNGIIKPIGQLEKSLAEESPLIEEGFGKIFTLCR 60

Query: 61  -GHCNSGKSRKLLMETSPSSPTPSTTR--------------------------------A 113
            G CNSG  RKLL  TSPSS TPS TR                                A
Sbjct: 61  KGQCNSGNIRKLLTATSPSSSTPSITRNNEEGENFKRGSPISKKEELSVKDKKELDNSEA 120

[Close]

BLAST of Cp4.1LG04g09050 vs. ExPASy TrEMBL
Match: A0A6J1C2B2 (uncharacterized protein LOC111007293 OS=Momordica charantia OX=3673 GN=LOC111007293 PE=4 SV=1)

HSP 1 Score: 104 bits (259), Expect = 1.29e-25
Identity = 66/139 (47.48%), Postives = 74/139 (53.24%), Query Frame = 0


Query: 18  DHSQGVPLGNGLMKPL-LLGTPLEEEVPLVEEN----------GHCNSGKSRKLLMETSP 77
           D   G+ LGNG++KP+  L   L EE PL+EE           G CNSG  RKLL  TSP
Sbjct: 58  DDEDGIRLGNGIIKPIGQLEKSLAEESPLIEEGFGKIFTLCRKGQCNSGNIRKLLTATSP 117

Query: 78  SSPTPSTTR--------------------------------AVSENLEAGHEEQQHYPDL 113
           SS TPS TR                                AVSENLEAG   Q+HYPDL
Sbjct: 118 SSSTPSITRNNEEGENFKRGSPISKKEELSVKDKKELDNSEAVSENLEAG---QEHYPDL 177

[Close]

BLAST of Cp4.1LG04g09050 vs. ExPASy TrEMBL
Match: A0A6J1E3V7 (uncharacterized protein LOC111025844 OS=Momordica charantia OX=3673 GN=LOC111025844 PE=4 SV=1)

HSP 1 Score: 103 bits (256), Expect = 1.33e-25
Identity = 74/157 (47.13%), Postives = 86/157 (54.78%), Query Frame = 0


Query: 1   MRPIHVLASLLLMF-FLFDHSQGVPLGNGLMKPL-LLGTPLEEEVPLVEEN--------- 60
           MR  +VLASLLL+F FL + +QG+ LGNG++KP+  L   L EE PL+EE          
Sbjct: 1   MRSTNVLASLLLIFSFLSNQAQGIRLGNGIIKPIGQLEKSLAEESPLIEEGFGKIFTLCR 60

Query: 61  -GHCNSGKSRKLLMETSPSSPTPSTTR--------------------------------A 113
            G CNSG  RKLL  TSPSS TPS TR                                A
Sbjct: 61  KGQCNSGNIRKLLTATSPSSSTPSITRNNDEGGNFRRANPISKKEELSVKDKKELDNSEA 120

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g09050 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG04g09050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023531425.1	2.04e-70	84.33	uncharacterized protein LOC111793666 [Cucurbita pepo subsp. pepo]	[more]
XP_023001652.1	1.96e-68	82.09	uncharacterized protein LOC111495723 [Cucurbita maxima]	[more]
XP_022933409.1	6.56e-67	82.09	uncharacterized protein LOC111440836 [Cucurbita moschata]	[more]
KAG6587859.1	7.59e-59	80.33	hypothetical protein SDJN03_16424, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7021747.1	1.30e-51	78.07	hypothetical protein SDJN02_15474, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Cp4.1LG04g09050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KH80	9.49e-69	82.09	uncharacterized protein LOC111495723 OS=Cucurbita maxima OX=3661 GN=LOC111495723...	[more]
A0A6J1EZP7	3.18e-67	82.09	uncharacterized protein LOC111440836 OS=Cucurbita moschata OX=3662 GN=LOC1114408...	[more]
A0A6J1C2H1	2.36e-31	49.68	uncharacterized protein LOC111007333 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A6J1C2B2	1.29e-25	47.48	uncharacterized protein LOC111007293 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A6J1E3V7	1.33e-25	47.13	uncharacterized protein LOC111025844 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]

BLAST of Cp4.1LG04g09050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..113
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..94
None	No IPR available	PANTHER	PTHR33743:SF19	SUBFAMILY NOT NAMED	coord: 80..113
IPR039337	Protein GOLVEN 2	PANTHER	PTHR33743	FAMILY NOT NAMED	coord: 80..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g09050.1	Cp4.1LG04g09050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007165	signal transduction
molecular_function	GO:0008083	growth factor activity