Cp4.1LG04g03350 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g03350
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Pentatricopeptide repeat-containing protein
Location	Cp4.1LG04: 7344636 .. 7346706 (+)
RNA-Seq Expression	Cp4.1LG04g03350
Synteny	Cp4.1LG04g03350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACTCTTCATCAAACGCCATTGCCGTAGTTTCACCTCTCAAAATCTAAAGAATTCGACACACCCACCAACAAAAGAGTCTCAAATTCTCCAATTTTGTGGCTCAGACCTACTCCACGATGCTCTACACACCCTAAACTCCCTCGATTCCTTCGATTCCACCACCAACAAATCCATTCTCTACGCTTCTCTCTTGCAAACCTGCACCAAGGTCGCTTCCTTCACCCATGGCCGTCAAATTCATGCCCATGTTCTTAAATCTGGCCTTGAAGCTGACCGGTTTGTTGGGAATAGCTTACTTTCTCTTTACTTTAAATTGGGTTCAGATTTCCGGCTGACTCGAAGAGTATTCGATGGTCTTTTTGTGAAGGATGTGGTGTCCTGGACGTCCATGATTACGAGCTATGTTCGAGAAGGTAAACCTGGTAATGCGATCGAATTGTTTTGGGATATGTTGGATTTAGGGATTGAGCCTAATGGGTTTACTTTATCGGCTGTGATCAAGGCGTGTTCTGAGATTGGGAATTTGGTTCTTGGTCGATGCTTTCATGGGTTAGTTGTAAGGCATGGATTCAATTCAAATCATGTCATTGTGAGTTCTTTGATAGACATGTACGGGAGAAACTTTGCTTCGAGCGATGCGCGCCAACTGTTCGATGAAATGCCTGAACCAGATGCAATATGTTGGACCTCTGTTATTTCAGCTCTTACAAGGAATGATTTGTATGAGGATGCATTGGGTTTCTTTTATTTGATGCTAAGAACTTATAGTTTGTCTCCTGATGGTTTTACATTTGGTTCTGTATTGACTGCCTGTGCTAATTTGGGGAGGTTGAGGCAAGGTGAAGAAGTTCATGCTAAGGTGATTGCGCATGGACTTGGTGGGAATGTGGTGGTTGAGAGTAGTCTGGTGGATATGTATGGGAAATGTGGAGCGGTTGAGAAGTCCCAACGCGTGTTCGATAGGATGTCGAAGAGGAACTCGGTTTCGTGGTCTGCATTGCTTGGAGTATATTGCCAAAATGGAGACTTTGAAAAGGTTATAAATATCTTTAGGGGAATGGAGAAGATCGACCTTTACAGTTTCGGAACGGTTATTCGTGCGTGTGCTGGGTTAGCAGCTGTAACTCAAGGGAAGGAGGTTCACTGTCAGTATGTAAGAAAGGGTGGATGGAGAGATGTCATTGTGGAATCAGCTCTAGTCGACTTATACGCGAAATGTGGTTGTATTGATTTTGCATATCGAATCTTTGAGCAGATGCCAACAAGAAACTTGATCACGTGGAACTCGATGATTCGTGGGTTCGCTCAGAACGGAAGAAGTGGGATTTCTATTGAGATATTTGAAGAGATGATTAAGGAAGGGATTAAGCCTGATTATATCAGTTTTATTGGTGTTCTTTTTGCTTGTAGTCATACAGGTTTGGTCGATCAAGGGCGACATTACTTCGTTCGAATGACCGAGGAATATGGAATCAAACCAGGAATCGAGCATTATAATTGTATGGTTGATCTTCTCGGCCGAGCTGGGCTGCTAGAAGAAGCTGAAAATTTGATCGAAAACGCAGACTTCAGAAACGATTCGTCTCTTTGGCAGGTTCTTCTAGGGGCTTGTACTACTTCTACAAACTCTGGTACTGCAGAACGCATAGCCAAGAAAATGATGGAGCTTGAACCTCAACACCATTTAAGCTATGTTCTCCTGGCTAACGTGTACAGAGCAGTAGGCCGATGGGACGACGCGTTGACGATCAGGAAGTTGATGAAAAGCCGACAGGTGAAGAAGGTGCCTGGTCAGAGCTGGATGTAGGGGGCAAAGCATCAAGGTTATGAGCCTCATATCAAACCCGAATTCAAGGCTGATGATGGCTTGGCATTGATTATCAAAATATGGGGTCAGCTATTGTTTTCATGCTCGTCCCAAGATGAAGAACAGCCATGAGAAGCCAGCCACTAAACATATCGAGAACGTACCGACCTGGTCGAAAAGGTTATTAGATGCTATTAACCGGGATTATCGAAAGTTCGTGAATTTTCCATGGAGACTATCAGTTGCAATTTTCAGTTAA

mRNA sequence

ATGAGACTCTTCATCAAACGCCATTGCCGTAGTTTCACCTCTCAAAATCTAAAGAATTCGACACACCCACCAACAAAAGAGTCTCAAATTCTCCAATTTTGTGGCTCAGACCTACTCCACGATGCTCTACACACCCTAAACTCCCTCGATTCCTTCGATTCCACCACCAACAAATCCATTCTCTACGCTTCTCTCTTGCAAACCTGCACCAAGGTCGCTTCCTTCACCCATGGCCGTCAAATTCATGCCCATGTTCTTAAATCTGGCCTTGAAGCTGACCGGTTTGTTGGGAATAGCTTACTTTCTCTTTACTTTAAATTGGGTTCAGATTTCCGGCTGACTCGAAGAGTATTCGATGGTCTTTTTGTGAAGGATGTGGTGTCCTGGACGTCCATGATTACGAGCTATGTTCGAGAAGGTAAACCTGGTAATGCGATCGAATTGTTTTGGGATATGTTGGATTTAGGGATTGAGCCTAATGGGTTTACTTTATCGGCTGTGATCAAGGCGTGTTCTGAGATTGGGAATTTGGTTCTTGGTCGATGCTTTCATGGGTTAGTTGTAAGGCATGGATTCAATTCAAATCATGTCATTGTGAGTTCTTTGATAGACATGTACGGGAGAAACTTTGCTTCGAGCGATGCGCGCCAACTGTTCGATGAAATGCCTGAACCAGATGCAATATGTTGGACCTCTGTTATTTCAGCTCTTACAAGGAATGATTTGTATGAGGATGCATTGGGTTTCTTTTATTTGATGCTAAGAACTTATAGTTTGTCTCCTGATGGTTTTACATTTGGTTCTGTATTGACTGCCTGTGCTAATTTGGGGAGGTTGAGGCAAGGTGAAGAAGTTCATGCTAAGGTGATTGCGCATGGACTTGGTGGGAATGTGGTGGTTGAGAGTAGTCTGGTGGATATGTATGGGAAATGTGGAGCGGTTGAGAAGTCCCAACGCGTGTTCGATAGGATGTCGAAGAGGAACTCGGTTTCGTGGTCTGCATTGCTTGGAGTATATTGCCAAAATGGAGACTTTGAAAAGGTTATAAATATCTTTAGGGGAATGGAGAAGATCGACCTTTACAGTTTCGGAACGGTTATTCGTGCGTGTGCTGGCTATTGTTTTCATGCTCGTCCCAAGATGAAGAACAGCCATGAGAAGCCAGCCACTAAACATATCGAGAACGTACCGACCTGGTCGAAAAGGTTATTAGATGCTATTAACCGGGATTATCGAAAGTTCGTGAATTTTCCATGGAGACTATCAGTTGCAATTTTCAGTTAA

Coding sequence (CDS)

ATGAGACTCTTCATCAAACGCCATTGCCGTAGTTTCACCTCTCAAAATCTAAAGAATTCGACACACCCACCAACAAAAGAGTCTCAAATTCTCCAATTTTGTGGCTCAGACCTACTCCACGATGCTCTACACACCCTAAACTCCCTCGATTCCTTCGATTCCACCACCAACAAATCCATTCTCTACGCTTCTCTCTTGCAAACCTGCACCAAGGTCGCTTCCTTCACCCATGGCCGTCAAATTCATGCCCATGTTCTTAAATCTGGCCTTGAAGCTGACCGGTTTGTTGGGAATAGCTTACTTTCTCTTTACTTTAAATTGGGTTCAGATTTCCGGCTGACTCGAAGAGTATTCGATGGTCTTTTTGTGAAGGATGTGGTGTCCTGGACGTCCATGATTACGAGCTATGTTCGAGAAGGTAAACCTGGTAATGCGATCGAATTGTTTTGGGATATGTTGGATTTAGGGATTGAGCCTAATGGGTTTACTTTATCGGCTGTGATCAAGGCGTGTTCTGAGATTGGGAATTTGGTTCTTGGTCGATGCTTTCATGGGTTAGTTGTAAGGCATGGATTCAATTCAAATCATGTCATTGTGAGTTCTTTGATAGACATGTACGGGAGAAACTTTGCTTCGAGCGATGCGCGCCAACTGTTCGATGAAATGCCTGAACCAGATGCAATATGTTGGACCTCTGTTATTTCAGCTCTTACAAGGAATGATTTGTATGAGGATGCATTGGGTTTCTTTTATTTGATGCTAAGAACTTATAGTTTGTCTCCTGATGGTTTTACATTTGGTTCTGTATTGACTGCCTGTGCTAATTTGGGGAGGTTGAGGCAAGGTGAAGAAGTTCATGCTAAGGTGATTGCGCATGGACTTGGTGGGAATGTGGTGGTTGAGAGTAGTCTGGTGGATATGTATGGGAAATGTGGAGCGGTTGAGAAGTCCCAACGCGTGTTCGATAGGATGTCGAAGAGGAACTCGGTTTCGTGGTCTGCATTGCTTGGAGTATATTGCCAAAATGGAGACTTTGAAAAGGTTATAAATATCTTTAGGGGAATGGAGAAGATCGACCTTTACAGTTTCGGAACGGTTATTCGTGCGTGTGCTGGCTATTGTTTTCATGCTCGTCCCAAGATGAAGAACAGCCATGAGAAGCCAGCCACTAAACATATCGAGAACGTACCGACCTGGTCGAAAAGGTTATTAGATGCTATTAACCGGGATTATCGAAAGTTCGTGAATTTTCCATGGAGACTATCAGTTGCAATTTTCAGTTAA

Protein sequence

MRLFIKRHCRSFTSQNLKNSTHPPTKESQILQFCGSDLLHDALHTLNSLDSFDSTTNKSILYASLLQTCTKVASFTHGRQIHAHVLKSGLEADRFVGNSLLSLYFKLGSDFRLTRRVFDGLFVKDVVSWTSMITSYVREGKPGNAIELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLGRCFHGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTRNDLYEDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVVESSLVDMYGKCGAVEKSQRVFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGMEKIDLYSFGTVIRACAGYCFHARPKMKNSHEKPATKHIENVPTWSKRLLDAINRDYRKFVNFPWRLSVAIFS

Homology

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BLAST of Cp4.1LG04g03350 vs. ExPASy Swiss-Prot
Match: Q9LR69 (Pentatricopeptide repeat-containing protein At1g03540 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E4 PE=2 SV=1)

HSP 1 Score: 447.2 bits (1149), Expect = 2.1e-124
Identity = 222/372 (59.68%), Postives = 276/372 (74.19%), Query Frame = 0


Query: 3   LFIKRHCRSFTSQNL--KNSTHPPTKESQILQFCGSDLLHDALHTLNSLDSFDSTTNKSI 62
           + +KRH     S  L    S+  PTK+S+IL+ C    L +A+  LNS  S +       
Sbjct: 4   IILKRHFSQHASLCLTPSISSSAPTKQSRILELCKLGQLTEAIRILNSTHSSEIPATPK- 63

Query: 63  LYASLLQTCTKVASFTHGRQIHAHVLKSGLEADRFVGNSLLSLYFKLGSDFRLTRRVFDG 122
           LYASLLQTC KV SF HG Q HAHV+KSGLE DR VGNSLLSLYFKLG   R TRRVFDG
Sbjct: 64  LYASLLQTCNKVFSFIHGIQFHAHVVKSGLETDRNVGNSLLSLYFKLGPGMRETRRVFDG 123

Query: 123 LFVKDVVSWTSMITSYVREGKPGNAIELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLG 182
            FVKD +SWTSM++ YV   +   A+E+F +M+  G++ N FTLS+ +KACSE+G + LG
Sbjct: 124 RFVKDAISWTSMMSGYVTGKEHVKALEVFVEMVSFGLDANEFTLSSAVKACSELGEVRLG 183

Query: 183 RCFHGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTRN 242
           RCFHG+V+ HGF  NH I S+L  +YG N    DAR++FDEMPEPD ICWT+V+SA ++N
Sbjct: 184 RCFHGVVITHGFEWNHFISSTLAYLYGVNREPVDARRVFDEMPEPDVICWTAVLSAFSKN 243

Query: 243 DLYEDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVV 302
           DLYE+ALG FY M R   L PDG TFG+VLTAC NL RL+QG+E+H K+I +G+G NVVV
Sbjct: 244 DLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNVVV 303

Query: 303 ESSLVDMYGKCGAVEKSQRVFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGMEKIDL 362
           ESSL+DMYGKCG+V ++++VF+ MSK+NSVSWSALLG YCQNG+ EK I IFR ME+ DL
Sbjct: 304 ESSLLDMYGKCGSVREARQVFNGMSKKNSVSWSALLGGYCQNGEHEKAIEIFREMEEKDL 363

Query: 363 YSFGTVIRACAG 373
           Y FGTV++ACAG
Sbjct: 364 YCFGTVLKACAG 374

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BLAST of Cp4.1LG04g03350 vs. ExPASy Swiss-Prot
Match: Q9LIQ7 (Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H87 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.1e-51
Identity = 135/409 (33.01%), Postives = 214/409 (52.32%), Query Frame = 0


Query: 27  ESQILQFCGSDLLHDALHTLNSLDSFDSTTNKSILYASLLQTCTKVASFTHGRQIHAHVL 86
           E + L+F  +DLL     + N L+      ++   Y +LL+ CT       GR +HAH+L
Sbjct: 31  EDESLKFPSNDLL--LRTSSNDLEGSYIPADRR-FYNTLLKKCTVFKLLIQGRIVHAHIL 90

Query: 87  KSGLEADRFVGNSLLSLYFKLGSDFRLTRRVFDGLFVKDVVSWTSMITSYVREGKPGNAI 146
           +S    D  +GN+LL++Y K GS     R+VF+ +  +D V+WT++I+ Y +  +P +A+
Sbjct: 91  QSIFRHDIVMGNTLLNMYAKCGS-LEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDAL 150

Query: 147 ELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLGRCFHGLVVRHGFNSNHVIVSSLIDMY 206
             F  ML  G  PN FTLS+VIKA +       G   HG  V+ GF+SN  + S+L+D+Y
Sbjct: 151 LFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLY 210

Query: 207 GRNFASSDARQLFDEMPEPDAICWTSVISALTRNDLYEDALGFFYLMLRTYSLSPDGFTF 266
            R     DA+ +FD +   + + W ++I+   R    E AL  F  MLR     P  F++
Sbjct: 211 TRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRD-GFRPSHFSY 270

Query: 267 GSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVVESSLVDMYGKCGAVEKSQRVFDRMSK 326
            S+  AC++ G L QG+ VHA +I  G        ++L+DMY K G++  ++++FDR++K
Sbjct: 271 ASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAK 330

Query: 327 RNSVSWSALLGVYCQNGDFEKVINIFRGMEKIDL----YSFGTVIRACA-----GYCFHA 386
           R+ VSW++LL  Y Q+G  ++ +  F  M ++ +     SF +V+ AC+        +H 
Sbjct: 331 RDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHY 390

Query: 387 RPKMKNSHEKPATKHIENVPTWSKRLLDAINRDYRKFVNFPWRLSVAIF 427
              MK     P   H   V     R  D +NR  R     P   + AI+
Sbjct: 391 YELMKKDGIVPEAWHYVTVVDLLGRAGD-LNRALRFIEEMPIEPTAAIW 433

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BLAST of Cp4.1LG04g03350 vs. ExPASy Swiss-Prot
Match: O81767 (Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana OX=3702 GN=EMB2758 PE=3 SV=2)

HSP 1 Score: 202.6 bits (514), Expect = 8.9e-51
Identity = 116/349 (33.24%), Postives = 194/349 (55.59%), Query Frame = 0


Query: 28  SQILQFCGSDLLHDALHTLNSLDSFDSTTNKSILYASLLQTCTKVASFTHGRQIHAHVLK 87
           + I  +C S    +AL   N L + DS T       SLL  CT+   F  G  IH++ +K
Sbjct: 221 AMISGYCQSGNAKEALTLSNGLRAMDSVT-----VVSLLSACTEAGDFNRGVTIHSYSIK 280

Query: 88  SGLEADRFVGNSLLSLYFKLGSDFRLTRRVFDGLFVKDVVSWTSMITSYVREGKPGNAIE 147
            GLE++ FV N L+ LY + G   R  ++VFD ++V+D++SW S+I +Y    +P  AI 
Sbjct: 281 HGLESELFVSNKLIDLYAEFGR-LRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAIS 340

Query: 148 LFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLGRCFHGLVVRHG-FNSNHVIVSSLIDMY 207
           LF +M    I+P+  TL ++    S++G++   R   G  +R G F  +  I ++++ MY
Sbjct: 341 LFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMY 400

Query: 208 GRNFASSDARQLFDEMPEPDAICWTSVISALTRNDLYEDALGFFYLMLRTYSLSPDGFTF 267
            +      AR +F+ +P  D I W ++IS   +N    +A+  + +M     ++ +  T+
Sbjct: 401 AKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTW 460

Query: 268 GSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVVESSLVDMYGKCGAVEKSQRVFDRMSK 327
            SVL AC+  G LRQG ++H +++ +GL  +V V +SL DMYGKCG +E +  +F ++ +
Sbjct: 461 VSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPR 520

Query: 328 RNSVSWSALLGVYCQNGDFEKVINIFRGM----EKIDLYSFGTVIRACA 372
            NSV W+ L+  +  +G  EK + +F+ M     K D  +F T++ AC+
Sbjct: 521 VNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACS 563

[Close]

BLAST of Cp4.1LG04g03350 vs. ExPASy Swiss-Prot
Match: Q0WNP3 (Pentatricopeptide repeat-containing protein At4g18520, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-A2 PE=1 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 7.6e-50
Identity = 106/311 (34.08%), Postives = 176/311 (56.59%), Query Frame = 0


Query: 64  SLLQTCTKVASFTHGRQIHAHVLKSGLEADRFVGNSLLSLYFKLGSDFRLTRRVFDGLFV 123
           S+L+ C++  +   GRQ+H+ V+K  ++ D FVG SL+ +Y K G +    R+VFDG+  
Sbjct: 289 SILKACSEEKALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCG-EISDCRKVFDGMSN 348

Query: 124 KDVVSWTSMITSYVREGKPGNAIELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLGRCF 183
           ++ V+WTS+I ++ REG    AI LF  M    +  N  T+ ++++AC  +G L+LG+  
Sbjct: 349 RNTVTWTSIIAAHAREGFGEEAISLFRIMKRRHLIANNLTVVSILRACGSVGALLLGKEL 408

Query: 184 HGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTRNDLY 243
           H  ++++    N  I S+L+ +Y +   S DA  +  ++P  D + WT++IS  +     
Sbjct: 409 HAQIIKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSSLGHE 468

Query: 244 EDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVVESS 303
            +AL F   M++   + P+ FT+ S L ACAN   L  G  +H+    +    NV V S+
Sbjct: 469 SEALDFLKEMIQE-GVEPNPFTYSSALKACANSESLLIGRSIHSIAKKNHALSNVFVGSA 528

Query: 304 LVDMYGKCGAVEKSQRVFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGME----KID 363
           L+ MY KCG V ++ RVFD M ++N VSW A++  Y +NG   + + +   ME    ++D
Sbjct: 529 LIHMYAKCGFVSEAFRVFDSMPEKNLVSWKAMIMGYARNGFCREALKLMYRMEAEGFEVD 588

Query: 364 LYSFGTVIRAC 371
            Y F T++  C
Sbjct: 589 DYIFATILSTC 597

[Close]

BLAST of Cp4.1LG04g03350 vs. ExPASy Swiss-Prot
Match: Q9LW63 (Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H32 PE=3 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.9e-49
Identity = 105/350 (30.00%), Postives = 190/350 (54.29%), Query Frame = 0


Query: 61  LYASLLQTCTKVASFTHGRQIHAHVLKSGLEADRFVGNSLLSLYFKL---GSDFRL---- 120
           ++ S+L++CT +     G  +H  +++ G++ D + GN+L+++Y KL   GS   +    
Sbjct: 107 VFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVF 166

Query: 121 ----------------------------TRRVFDGLFVKDVVSWTSMITSYVREGKPGNA 180
                                        RRVF+ +  KDVVS+ ++I  Y + G   +A
Sbjct: 167 DEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDA 226

Query: 181 IELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLGRCFHGLVVRHGFNSNHVIVSSLIDM 240
           + +  +M    ++P+ FTLS+V+   SE  +++ G+  HG V+R G +S+  I SSL+DM
Sbjct: 227 LRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDM 286

Query: 241 YGRNFASSDARQLFDEMPEPDAICWTSVISALTRNDLYEDALGFFYLMLRTYSLSPDGFT 300
           Y ++    D+ ++F  +   D I W S+++   +N  Y +AL  F  M+ T  + P    
Sbjct: 287 YAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMV-TAKVKPGAVA 346

Query: 301 FGSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVVESSLVDMYGKCGAVEKSQRVFDRMS 360
           F SV+ ACA+L  L  G+++H  V+  G G N+ + S+LVDMY KCG ++ ++++FDRM+
Sbjct: 347 FSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMN 406

Query: 361 KRNSVSWSALLGVYCQNGDFEKVINIFRGME----KIDLYSFGTVIRACA 372
             + VSW+A++  +  +G   + +++F  M+    K +  +F  V+ AC+
Sbjct: 407 VLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACS 455

[Close]

BLAST of Cp4.1LG04g03350 vs. NCBI nr
Match: XP_023529479.1 (pentatricopeptide repeat-containing protein At1g03540 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 753 bits (1943), Expect = 1.21e-269
Identity = 372/372 (100.00%), Postives = 372/372 (100.00%), Query Frame = 0


Query: 1   MRLFIKRHCRSFTSQNLKNSTHPPTKESQILQFCGSDLLHDALHTLNSLDSFDSTTNKSI 60
           MRLFIKRHCRSFTSQNLKNSTHPPTKESQILQFCGSDLLHDALHTLNSLDSFDSTTNKSI
Sbjct: 1   MRLFIKRHCRSFTSQNLKNSTHPPTKESQILQFCGSDLLHDALHTLNSLDSFDSTTNKSI 60

Query: 61  LYASLLQTCTKVASFTHGRQIHAHVLKSGLEADRFVGNSLLSLYFKLGSDFRLTRRVFDG 120
           LYASLLQTCTKVASFTHGRQIHAHVLKSGLEADRFVGNSLLSLYFKLGSDFRLTRRVFDG
Sbjct: 61  LYASLLQTCTKVASFTHGRQIHAHVLKSGLEADRFVGNSLLSLYFKLGSDFRLTRRVFDG 120

Query: 121 LFVKDVVSWTSMITSYVREGKPGNAIELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLG 180
           LFVKDVVSWTSMITSYVREGKPGNAIELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLG
Sbjct: 121 LFVKDVVSWTSMITSYVREGKPGNAIELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLG 180

Query: 181 RCFHGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTRN 240
           RCFHGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTRN
Sbjct: 181 RCFHGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTRN 240

Query: 241 DLYEDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVV 300
           DLYEDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVV
Sbjct: 241 DLYEDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVV 300

Query: 301 ESSLVDMYGKCGAVEKSQRVFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGMEKIDL 360
           ESSLVDMYGKCGAVEKSQRVFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGMEKIDL
Sbjct: 301 ESSLVDMYGKCGAVEKSQRVFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGMEKIDL 360

Query: 361 YSFGTVIRACAG 372
           YSFGTVIRACAG
Sbjct: 361 YSFGTVIRACAG 372

[Close]

BLAST of Cp4.1LG04g03350 vs. NCBI nr
Match: KAG6589200.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 746 bits (1925), Expect = 6.60e-267
Identity = 369/372 (99.19%), Postives = 370/372 (99.46%), Query Frame = 0


Query: 1   MRLFIKRHCRSFTSQNLKNSTHPPTKESQILQFCGSDLLHDALHTLNSLDSFDSTTNKSI 60
           MRLFIKRHCRSFTSQNLKNSTHPPTKESQILQFCGS LLHDALHTLNSLDSFDSTTNKSI
Sbjct: 1   MRLFIKRHCRSFTSQNLKNSTHPPTKESQILQFCGSGLLHDALHTLNSLDSFDSTTNKSI 60

Query: 61  LYASLLQTCTKVASFTHGRQIHAHVLKSGLEADRFVGNSLLSLYFKLGSDFRLTRRVFDG 120
           LYASLLQTCTKVASF+HGRQIHAHVLKSGLEADRFVGNSLLSLYFKLGSD RLTRRVFDG
Sbjct: 61  LYASLLQTCTKVASFSHGRQIHAHVLKSGLEADRFVGNSLLSLYFKLGSDVRLTRRVFDG 120

Query: 121 LFVKDVVSWTSMITSYVREGKPGNAIELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLG 180
           LFVKDVVSWTSMITSYVREGKPGNAIELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLG
Sbjct: 121 LFVKDVVSWTSMITSYVREGKPGNAIELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLG 180

Query: 181 RCFHGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTRN 240
           RCFHGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTRN
Sbjct: 181 RCFHGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTRN 240

Query: 241 DLYEDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVV 300
           DLYEDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVV
Sbjct: 241 DLYEDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVV 300

Query: 301 ESSLVDMYGKCGAVEKSQRVFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGMEKIDL 360
           ESSLVDMYGKCGAVEKSQRVFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGMEKIDL
Sbjct: 301 ESSLVDMYGKCGAVEKSQRVFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGMEKIDL 360

Query: 361 YSFGTVIRACAG 372
           YSFGTVIRACAG
Sbjct: 361 YSFGTVIRACAG 372

[Close]

BLAST of Cp4.1LG04g03350 vs. NCBI nr
Match: KAG7022900.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 742 bits (1916), Expect = 1.54e-265
Identity = 367/372 (98.66%), Postives = 369/372 (99.19%), Query Frame = 0


Query: 1   MRLFIKRHCRSFTSQNLKNSTHPPTKESQILQFCGSDLLHDALHTLNSLDSFDSTTNKSI 60
           MRL IKRHCRSFTSQNLKNSTHPPTKESQILQFCGS LLHDA+HTLNSLDSFDSTTNKSI
Sbjct: 1   MRLIIKRHCRSFTSQNLKNSTHPPTKESQILQFCGSGLLHDAVHTLNSLDSFDSTTNKSI 60

Query: 61  LYASLLQTCTKVASFTHGRQIHAHVLKSGLEADRFVGNSLLSLYFKLGSDFRLTRRVFDG 120
           LYASLLQTCTKVASF+HGRQIHAHVLKSGLEADRFVGNSLLSLYFKLGSD RLTRRVFDG
Sbjct: 61  LYASLLQTCTKVASFSHGRQIHAHVLKSGLEADRFVGNSLLSLYFKLGSDVRLTRRVFDG 120

Query: 121 LFVKDVVSWTSMITSYVREGKPGNAIELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLG 180
           LFVKDVVSWTSMITSYVREGKPGNAIELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLG
Sbjct: 121 LFVKDVVSWTSMITSYVREGKPGNAIELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLG 180

Query: 181 RCFHGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTRN 240
           RCFHGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTRN
Sbjct: 181 RCFHGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTRN 240

Query: 241 DLYEDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVV 300
           DLYEDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVV
Sbjct: 241 DLYEDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVV 300

Query: 301 ESSLVDMYGKCGAVEKSQRVFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGMEKIDL 360
           ESSLVDMYGKCGAVEKSQRVFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGMEKIDL
Sbjct: 301 ESSLVDMYGKCGAVEKSQRVFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGMEKIDL 360

Query: 361 YSFGTVIRACAG 372
           YSFGTVIRACAG
Sbjct: 361 YSFGTVIRACAG 372

[Close]

BLAST of Cp4.1LG04g03350 vs. NCBI nr
Match: XP_022988714.1 (pentatricopeptide repeat-containing protein At1g03540 [Cucurbita maxima])

HSP 1 Score: 740 bits (1910), Expect = 1.26e-264
Identity = 364/372 (97.85%), Postives = 368/372 (98.92%), Query Frame = 0


Query: 1   MRLFIKRHCRSFTSQNLKNSTHPPTKESQILQFCGSDLLHDALHTLNSLDSFDSTTNKSI 60
           MRLFIKRHCRSFTSQNLKNSTHPPTKESQILQFCGS LLHDALHTLNSLDSF+STTNKSI
Sbjct: 1   MRLFIKRHCRSFTSQNLKNSTHPPTKESQILQFCGSGLLHDALHTLNSLDSFNSTTNKSI 60

Query: 61  LYASLLQTCTKVASFTHGRQIHAHVLKSGLEADRFVGNSLLSLYFKLGSDFRLTRRVFDG 120
           LYASLLQTCTKVASF+HGRQIHAHVLKSGLE DRFVGNSLLSLYFKLGSDFRLTRRVFDG
Sbjct: 61  LYASLLQTCTKVASFSHGRQIHAHVLKSGLETDRFVGNSLLSLYFKLGSDFRLTRRVFDG 120

Query: 121 LFVKDVVSWTSMITSYVREGKPGNAIELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLG 180
           LFVKDVVSWTSMITSYVREGKPGNAIE FWDMLDLGIEPNGFTLSAVIKACSEIGNL+LG
Sbjct: 121 LFVKDVVSWTSMITSYVREGKPGNAIEFFWDMLDLGIEPNGFTLSAVIKACSEIGNLILG 180

Query: 181 RCFHGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTRN 240
           RCFHGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTRN
Sbjct: 181 RCFHGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTRN 240

Query: 241 DLYEDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVV 300
           DLYEDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVV
Sbjct: 241 DLYEDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVV 300

Query: 301 ESSLVDMYGKCGAVEKSQRVFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGMEKIDL 360
           ESSLVDMYGKCGA+EKSQ VFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGMEKIDL
Sbjct: 301 ESSLVDMYGKCGAIEKSQLVFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGMEKIDL 360

Query: 361 YSFGTVIRACAG 372
           YSFGTVIRACAG
Sbjct: 361 YSFGTVIRACAG 372

[Close]

BLAST of Cp4.1LG04g03350 vs. NCBI nr
Match: XP_022930613.1 (pentatricopeptide repeat-containing protein At1g03540 [Cucurbita moschata])

HSP 1 Score: 738 bits (1906), Expect = 5.12e-264
Identity = 365/372 (98.12%), Postives = 368/372 (98.92%), Query Frame = 0


Query: 1   MRLFIKRHCRSFTSQNLKNSTHPPTKESQILQFCGSDLLHDALHTLNSLDSFDSTTNKSI 60
           MRL IKRHCRSFTSQNLKNSTHPPTK+SQILQFCGS LL+DALHTLNSLDSFDSTTNKSI
Sbjct: 1   MRLIIKRHCRSFTSQNLKNSTHPPTKQSQILQFCGSGLLYDALHTLNSLDSFDSTTNKSI 60

Query: 61  LYASLLQTCTKVASFTHGRQIHAHVLKSGLEADRFVGNSLLSLYFKLGSDFRLTRRVFDG 120
           LYASLLQTCTKVASF+HGRQIHAHVLKSGLEADRFVGNSLLSLYFKLGSD RLTRRVFDG
Sbjct: 61  LYASLLQTCTKVASFSHGRQIHAHVLKSGLEADRFVGNSLLSLYFKLGSDVRLTRRVFDG 120

Query: 121 LFVKDVVSWTSMITSYVREGKPGNAIELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLG 180
           LFVKDVVSWTSMITSYVREGKPGNAIELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLG
Sbjct: 121 LFVKDVVSWTSMITSYVREGKPGNAIELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLG 180

Query: 181 RCFHGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTRN 240
           RCFHGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTRN
Sbjct: 181 RCFHGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTRN 240

Query: 241 DLYEDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVV 300
           DLYEDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVI HGLGGNVVV
Sbjct: 241 DLYEDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVIVHGLGGNVVV 300

Query: 301 ESSLVDMYGKCGAVEKSQRVFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGMEKIDL 360
           ESSLVDMYGKCGAVEKSQRVFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGMEKIDL
Sbjct: 301 ESSLVDMYGKCGAVEKSQRVFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGMEKIDL 360

Query: 361 YSFGTVIRACAG 372
           YSFGTVIRACAG
Sbjct: 361 YSFGTVIRACAG 372

[Close]

BLAST of Cp4.1LG04g03350 vs. ExPASy TrEMBL
Match: A0A6J1JMC8 (pentatricopeptide repeat-containing protein At1g03540 OS=Cucurbita maxima OX=3661 GN=LOC111485968 PE=4 SV=1)

HSP 1 Score: 740 bits (1910), Expect = 6.10e-265
Identity = 364/372 (97.85%), Postives = 368/372 (98.92%), Query Frame = 0


Query: 1   MRLFIKRHCRSFTSQNLKNSTHPPTKESQILQFCGSDLLHDALHTLNSLDSFDSTTNKSI 60
           MRLFIKRHCRSFTSQNLKNSTHPPTKESQILQFCGS LLHDALHTLNSLDSF+STTNKSI
Sbjct: 1   MRLFIKRHCRSFTSQNLKNSTHPPTKESQILQFCGSGLLHDALHTLNSLDSFNSTTNKSI 60

Query: 61  LYASLLQTCTKVASFTHGRQIHAHVLKSGLEADRFVGNSLLSLYFKLGSDFRLTRRVFDG 120
           LYASLLQTCTKVASF+HGRQIHAHVLKSGLE DRFVGNSLLSLYFKLGSDFRLTRRVFDG
Sbjct: 61  LYASLLQTCTKVASFSHGRQIHAHVLKSGLETDRFVGNSLLSLYFKLGSDFRLTRRVFDG 120

Query: 121 LFVKDVVSWTSMITSYVREGKPGNAIELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLG 180
           LFVKDVVSWTSMITSYVREGKPGNAIE FWDMLDLGIEPNGFTLSAVIKACSEIGNL+LG
Sbjct: 121 LFVKDVVSWTSMITSYVREGKPGNAIEFFWDMLDLGIEPNGFTLSAVIKACSEIGNLILG 180

Query: 181 RCFHGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTRN 240
           RCFHGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTRN
Sbjct: 181 RCFHGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTRN 240

Query: 241 DLYEDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVV 300
           DLYEDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVV
Sbjct: 241 DLYEDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVV 300

Query: 301 ESSLVDMYGKCGAVEKSQRVFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGMEKIDL 360
           ESSLVDMYGKCGA+EKSQ VFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGMEKIDL
Sbjct: 301 ESSLVDMYGKCGAIEKSQLVFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGMEKIDL 360

Query: 361 YSFGTVIRACAG 372
           YSFGTVIRACAG
Sbjct: 361 YSFGTVIRACAG 372

[Close]

BLAST of Cp4.1LG04g03350 vs. ExPASy TrEMBL
Match: A0A6J1EVR7 (pentatricopeptide repeat-containing protein At1g03540 OS=Cucurbita moschata OX=3662 GN=LOC111437022 PE=4 SV=1)

HSP 1 Score: 738 bits (1906), Expect = 2.48e-264
Identity = 365/372 (98.12%), Postives = 368/372 (98.92%), Query Frame = 0


Query: 1   MRLFIKRHCRSFTSQNLKNSTHPPTKESQILQFCGSDLLHDALHTLNSLDSFDSTTNKSI 60
           MRL IKRHCRSFTSQNLKNSTHPPTK+SQILQFCGS LL+DALHTLNSLDSFDSTTNKSI
Sbjct: 1   MRLIIKRHCRSFTSQNLKNSTHPPTKQSQILQFCGSGLLYDALHTLNSLDSFDSTTNKSI 60

Query: 61  LYASLLQTCTKVASFTHGRQIHAHVLKSGLEADRFVGNSLLSLYFKLGSDFRLTRRVFDG 120
           LYASLLQTCTKVASF+HGRQIHAHVLKSGLEADRFVGNSLLSLYFKLGSD RLTRRVFDG
Sbjct: 61  LYASLLQTCTKVASFSHGRQIHAHVLKSGLEADRFVGNSLLSLYFKLGSDVRLTRRVFDG 120

Query: 121 LFVKDVVSWTSMITSYVREGKPGNAIELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLG 180
           LFVKDVVSWTSMITSYVREGKPGNAIELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLG
Sbjct: 121 LFVKDVVSWTSMITSYVREGKPGNAIELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLG 180

Query: 181 RCFHGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTRN 240
           RCFHGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTRN
Sbjct: 181 RCFHGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTRN 240

Query: 241 DLYEDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVV 300
           DLYEDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVI HGLGGNVVV
Sbjct: 241 DLYEDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVIVHGLGGNVVV 300

Query: 301 ESSLVDMYGKCGAVEKSQRVFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGMEKIDL 360
           ESSLVDMYGKCGAVEKSQRVFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGMEKIDL
Sbjct: 301 ESSLVDMYGKCGAVEKSQRVFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGMEKIDL 360

Query: 361 YSFGTVIRACAG 372
           YSFGTVIRACAG
Sbjct: 361 YSFGTVIRACAG 372

[Close]

BLAST of Cp4.1LG04g03350 vs. ExPASy TrEMBL
Match: A0A6J1D3F1 (pentatricopeptide repeat-containing protein At1g03540 OS=Momordica charantia OX=3673 GN=LOC111016671 PE=4 SV=1)

HSP 1 Score: 661 bits (1705), Expect = 8.86e-234
Identity = 324/372 (87.10%), Postives = 343/372 (92.20%), Query Frame = 0


Query: 1   MRLFIKRHCRSFTSQNLKNSTHPPTKESQILQFCGSDLLHDALHTLNSLDSFDSTTNKSI 60
           MRLF KRHC SFT  NLKN T+  TK SQ+LQ C S LLHDALH LNS+D FD+ TNK I
Sbjct: 1   MRLFFKRHCSSFTFHNLKNFTYASTKGSQVLQHCRSGLLHDALHILNSVDLFDTATNKPI 60

Query: 61  LYASLLQTCTKVASFTHGRQIHAHVLKSGLEADRFVGNSLLSLYFKLGSDFRLTRRVFDG 120
           LYASLLQTC KVASF+HGRQIHAHV+KSGLE DRFVGNSLLSLYFKLGSD+ LTRRVFDG
Sbjct: 61  LYASLLQTCIKVASFSHGRQIHAHVVKSGLETDRFVGNSLLSLYFKLGSDYLLTRRVFDG 120

Query: 121 LFVKDVVSWTSMITSYVREGKPGNAIELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLG 180
           LFVKDVVSWTSMIT YVREGKPGNAIELFWDMLDLGIEPNGFT+SAVIKACSEIGNLVLG
Sbjct: 121 LFVKDVVSWTSMITGYVREGKPGNAIELFWDMLDLGIEPNGFTISAVIKACSEIGNLVLG 180

Query: 181 RCFHGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTRN 240
           RCFHGLV+RHGF+SNHVIVSSLIDMYGRN AS+DARQLFDE+ EPDAICWTSVISA TRN
Sbjct: 181 RCFHGLVLRHGFDSNHVIVSSLIDMYGRNCASNDARQLFDELLEPDAICWTSVISAFTRN 240

Query: 241 DLYEDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVV 300
           DLYE+ALGFFY M RTY LSPDGFTFG+VLTAC NLGRLRQGEEVHAKVIAHGLGGNVVV
Sbjct: 241 DLYEEALGFFYSMQRTYRLSPDGFTFGTVLTACGNLGRLRQGEEVHAKVIAHGLGGNVVV 300

Query: 301 ESSLVDMYGKCGAVEKSQRVFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGMEKIDL 360
           ESSLVDMYGKCGAV+KSQ VFDRMS+RNSVSWSALLGVYCQNGDFE VIN+FR ME++DL
Sbjct: 301 ESSLVDMYGKCGAVDKSQLVFDRMSRRNSVSWSALLGVYCQNGDFEMVINLFREMEEVDL 360

Query: 361 YSFGTVIRACAG 372
           YSFGTVIRACAG
Sbjct: 361 YSFGTVIRACAG 372

[Close]

BLAST of Cp4.1LG04g03350 vs. ExPASy TrEMBL
Match: A0A0A0K5P0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047230 PE=4 SV=1)

HSP 1 Score: 605 bits (1560), Expect = 9.87e-212
Identity = 299/373 (80.16%), Postives = 324/373 (86.86%), Query Frame = 0


Query: 1   MRLFIKRHCRS-FTSQNLKNSTHPPTKESQILQFCGSDLLHDALHTLNSLDSFDSTTNKS 60
           M LF+KRHC S FTSQN K STHP  K SQILQFC S LL+DALH LNS+D +DS  NK 
Sbjct: 1   MMLFLKRHCSSSFTSQNFKYSTHPSIKLSQILQFCKSGLLNDALHLLNSIDLYDSRINKP 60

Query: 61  ILYASLLQTCTKVASFTHGRQIHAHVLKSGLEADRFVGNSLLSLYFKLGSDFRLTRRVFD 120
           +LYASLLQTC KV SFT GRQ HAHV+KSGLE DRFVGNSLLSLYFKLGSD  LTRRVFD
Sbjct: 61  LLYASLLQTCIKVDSFTRGRQFHAHVVKSGLETDRFVGNSLLSLYFKLGSDSLLTRRVFD 120

Query: 121 GLFVKDVVSWTSMITSYVREGKPGNAIELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVL 180
           GLFVKDVVSW SMIT YVREGK G AIELFWDMLD GIEPNGFTLSAVIKACSEIGNLVL
Sbjct: 121 GLFVKDVVSWASMITGYVREGKSGIAIELFWDMLDSGIEPNGFTLSAVIKACSEIGNLVL 180

Query: 181 GRCFHGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTR 240
           G+CFHG+VVR GF+SN VI+SSLIDMYGRN  SSDARQLFDE+ EPD +CWT+VISA TR
Sbjct: 181 GKCFHGVVVRRGFDSNPVILSSLIDMYGRNSVSSDARQLFDELLEPDPVCWTTVISAFTR 240

Query: 241 NDLYEDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVIAHGLGGNVV 300
           NDLYE+ALGFFYL  R + L PD +TFGSVLTAC NLGRLRQGEE+HAKVIA+G  GNVV
Sbjct: 241 NDLYEEALGFFYLKHRAHRLCPDNYTFGSVLTACGNLGRLRQGEEIHAKVIAYGFSGNVV 300

Query: 301 VESSLVDMYGKCGAVEKSQRVFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGMEKID 360
            ESSLVDMYGKCGAVEKSQR+FDRMS RNSVSWSALL VYC NGD+EK +N+FR M+++D
Sbjct: 301 TESSLVDMYGKCGAVEKSQRLFDRMSNRNSVSWSALLAVYCHNGDYEKAVNLFREMKEVD 360

Query: 361 LYSFGTVIRACAG 372
           LYSFGTVIRACAG
Sbjct: 361 LYSFGTVIRACAG 373

[Close]

BLAST of Cp4.1LG04g03350 vs. ExPASy TrEMBL
Match: A0A5A7SR37 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003650 PE=4 SV=1)

HSP 1 Score: 602 bits (1551), Expect = 3.23e-210
Identity = 298/373 (79.89%), Postives = 325/373 (87.13%), Query Frame = 0


Query: 1   MRLFIKRHCRS-FTSQNLKNSTHPPTKESQILQFCGSDLLHDALHTLNSLDSFDSTTNKS 60
           M LF KRHC S FTSQN K STH   K  QILQFC S LL+DALH LNS+D +DS  NK 
Sbjct: 1   MMLFFKRHCTSSFTSQNFKYSTHLSNKLFQILQFCKSGLLNDALHILNSVDLYDSRINKP 60

Query: 61  ILYASLLQTCTKVASFTHGRQIHAHVLKSGLEADRFVGNSLLSLYFKLGSDFRLTRRVFD 120
           +LYASLLQTCTKV SF+ G Q HAHV+KSGLE DRFVGNSLLSLYFKLGS+  LTRRVFD
Sbjct: 61  LLYASLLQTCTKVDSFSSGCQFHAHVVKSGLETDRFVGNSLLSLYFKLGSNCLLTRRVFD 120

Query: 121 GLFVKDVVSWTSMITSYVREGKPGNAIELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVL 180
           GLFVKDVVSW SMIT YVREGK G AIELFWDMLD GIEPN FTLS VIKACSEIGNLVL
Sbjct: 121 GLFVKDVVSWASMITGYVREGKSGMAIELFWDMLDSGIEPNDFTLSTVIKACSEIGNLVL 180

Query: 181 GRCFHGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTR 240
           G+CFHG+VVR GF+SN VI+SSLIDMYGRN+ SS+ARQLFDE+ EPD +CWT+VISA TR
Sbjct: 181 GKCFHGVVVRRGFDSNPVILSSLIDMYGRNYLSSEARQLFDELLEPDPVCWTTVISAFTR 240

Query: 241 NDLYEDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVIAHGLGGNVV 300
           ND YE+ALGFFYLM R Y LSPD +TFGSVLTAC NLGRL+QGEE+HAKVIA+G GGNVV
Sbjct: 241 NDFYEEALGFFYLMHRAYRLSPDNYTFGSVLTACGNLGRLKQGEEIHAKVIAYGFGGNVV 300

Query: 301 VESSLVDMYGKCGAVEKSQRVFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGMEKID 360
           VESSLVDMYGKCGAVEKSQRVFDRMS RNSVSWSALL VYCQNGDFEKV+++FR M+K+D
Sbjct: 301 VESSLVDMYGKCGAVEKSQRVFDRMSNRNSVSWSALLAVYCQNGDFEKVVSLFREMKKVD 360

Query: 361 LYSFGTVIRACAG 372
           LYSFGTV+RACAG
Sbjct: 361 LYSFGTVLRACAG 373

[Close]

BLAST of Cp4.1LG04g03350 vs. TAIR 10
Match: AT1G03540.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 447.2 bits (1149), Expect = 1.5e-125
Identity = 222/372 (59.68%), Postives = 276/372 (74.19%), Query Frame = 0


Query: 3   LFIKRHCRSFTSQNL--KNSTHPPTKESQILQFCGSDLLHDALHTLNSLDSFDSTTNKSI 62
           + +KRH     S  L    S+  PTK+S+IL+ C    L +A+  LNS  S +       
Sbjct: 4   IILKRHFSQHASLCLTPSISSSAPTKQSRILELCKLGQLTEAIRILNSTHSSEIPATPK- 63

Query: 63  LYASLLQTCTKVASFTHGRQIHAHVLKSGLEADRFVGNSLLSLYFKLGSDFRLTRRVFDG 122
           LYASLLQTC KV SF HG Q HAHV+KSGLE DR VGNSLLSLYFKLG   R TRRVFDG
Sbjct: 64  LYASLLQTCNKVFSFIHGIQFHAHVVKSGLETDRNVGNSLLSLYFKLGPGMRETRRVFDG 123

Query: 123 LFVKDVVSWTSMITSYVREGKPGNAIELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLG 182
            FVKD +SWTSM++ YV   +   A+E+F +M+  G++ N FTLS+ +KACSE+G + LG
Sbjct: 124 RFVKDAISWTSMMSGYVTGKEHVKALEVFVEMVSFGLDANEFTLSSAVKACSELGEVRLG 183

Query: 183 RCFHGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTRN 242
           RCFHG+V+ HGF  NH I S+L  +YG N    DAR++FDEMPEPD ICWT+V+SA ++N
Sbjct: 184 RCFHGVVITHGFEWNHFISSTLAYLYGVNREPVDARRVFDEMPEPDVICWTAVLSAFSKN 243

Query: 243 DLYEDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVV 302
           DLYE+ALG FY M R   L PDG TFG+VLTAC NL RL+QG+E+H K+I +G+G NVVV
Sbjct: 244 DLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNVVV 303

Query: 303 ESSLVDMYGKCGAVEKSQRVFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGMEKIDL 362
           ESSL+DMYGKCG+V ++++VF+ MSK+NSVSWSALLG YCQNG+ EK I IFR ME+ DL
Sbjct: 304 ESSLLDMYGKCGSVREARQVFNGMSKKNSVSWSALLGGYCQNGEHEKAIEIFREMEEKDL 363

Query: 363 YSFGTVIRACAG 373
           Y FGTV++ACAG
Sbjct: 364 YCFGTVLKACAG 374

[Close]

BLAST of Cp4.1LG04g03350 vs. TAIR 10
Match: AT3G24000.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 205.7 bits (522), Expect = 7.5e-53
Identity = 135/409 (33.01%), Postives = 214/409 (52.32%), Query Frame = 0


Query: 27  ESQILQFCGSDLLHDALHTLNSLDSFDSTTNKSILYASLLQTCTKVASFTHGRQIHAHVL 86
           E + L+F  +DLL     + N L+      ++   Y +LL+ CT       GR +HAH+L
Sbjct: 31  EDESLKFPSNDLL--LRTSSNDLEGSYIPADRR-FYNTLLKKCTVFKLLIQGRIVHAHIL 90

Query: 87  KSGLEADRFVGNSLLSLYFKLGSDFRLTRRVFDGLFVKDVVSWTSMITSYVREGKPGNAI 146
           +S    D  +GN+LL++Y K GS     R+VF+ +  +D V+WT++I+ Y +  +P +A+
Sbjct: 91  QSIFRHDIVMGNTLLNMYAKCGS-LEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDAL 150

Query: 147 ELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLGRCFHGLVVRHGFNSNHVIVSSLIDMY 206
             F  ML  G  PN FTLS+VIKA +       G   HG  V+ GF+SN  + S+L+D+Y
Sbjct: 151 LFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLY 210

Query: 207 GRNFASSDARQLFDEMPEPDAICWTSVISALTRNDLYEDALGFFYLMLRTYSLSPDGFTF 266
            R     DA+ +FD +   + + W ++I+   R    E AL  F  MLR     P  F++
Sbjct: 211 TRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRD-GFRPSHFSY 270

Query: 267 GSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVVESSLVDMYGKCGAVEKSQRVFDRMSK 326
            S+  AC++ G L QG+ VHA +I  G        ++L+DMY K G++  ++++FDR++K
Sbjct: 271 ASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAK 330

Query: 327 RNSVSWSALLGVYCQNGDFEKVINIFRGMEKIDL----YSFGTVIRACA-----GYCFHA 386
           R+ VSW++LL  Y Q+G  ++ +  F  M ++ +     SF +V+ AC+        +H 
Sbjct: 331 RDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHY 390

Query: 387 RPKMKNSHEKPATKHIENVPTWSKRLLDAINRDYRKFVNFPWRLSVAIF 427
              MK     P   H   V     R  D +NR  R     P   + AI+
Sbjct: 391 YELMKKDGIVPEAWHYVTVVDLLGRAGD-LNRALRFIEEMPIEPTAAIW 433

[Close]

BLAST of Cp4.1LG04g03350 vs. TAIR 10
Match: AT4G33990.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 202.6 bits (514), Expect = 6.3e-52
Identity = 116/349 (33.24%), Postives = 194/349 (55.59%), Query Frame = 0


Query: 28  SQILQFCGSDLLHDALHTLNSLDSFDSTTNKSILYASLLQTCTKVASFTHGRQIHAHVLK 87
           + I  +C S    +AL   N L + DS T       SLL  CT+   F  G  IH++ +K
Sbjct: 221 AMISGYCQSGNAKEALTLSNGLRAMDSVT-----VVSLLSACTEAGDFNRGVTIHSYSIK 280

Query: 88  SGLEADRFVGNSLLSLYFKLGSDFRLTRRVFDGLFVKDVVSWTSMITSYVREGKPGNAIE 147
            GLE++ FV N L+ LY + G   R  ++VFD ++V+D++SW S+I +Y    +P  AI 
Sbjct: 281 HGLESELFVSNKLIDLYAEFGR-LRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAIS 340

Query: 148 LFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLGRCFHGLVVRHG-FNSNHVIVSSLIDMY 207
           LF +M    I+P+  TL ++    S++G++   R   G  +R G F  +  I ++++ MY
Sbjct: 341 LFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMY 400

Query: 208 GRNFASSDARQLFDEMPEPDAICWTSVISALTRNDLYEDALGFFYLMLRTYSLSPDGFTF 267
            +      AR +F+ +P  D I W ++IS   +N    +A+  + +M     ++ +  T+
Sbjct: 401 AKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTW 460

Query: 268 GSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVVESSLVDMYGKCGAVEKSQRVFDRMSK 327
            SVL AC+  G LRQG ++H +++ +GL  +V V +SL DMYGKCG +E +  +F ++ +
Sbjct: 461 VSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPR 520

Query: 328 RNSVSWSALLGVYCQNGDFEKVINIFRGM----EKIDLYSFGTVIRACA 372
            NSV W+ L+  +  +G  EK + +F+ M     K D  +F T++ AC+
Sbjct: 521 VNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACS 563

[Close]

BLAST of Cp4.1LG04g03350 vs. TAIR 10
Match: AT4G18520.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 199.5 bits (506), Expect = 5.4e-51
Identity = 106/311 (34.08%), Postives = 176/311 (56.59%), Query Frame = 0


Query: 64  SLLQTCTKVASFTHGRQIHAHVLKSGLEADRFVGNSLLSLYFKLGSDFRLTRRVFDGLFV 123
           S+L+ C++  +   GRQ+H+ V+K  ++ D FVG SL+ +Y K G +    R+VFDG+  
Sbjct: 289 SILKACSEEKALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCG-EISDCRKVFDGMSN 348

Query: 124 KDVVSWTSMITSYVREGKPGNAIELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLGRCF 183
           ++ V+WTS+I ++ REG    AI LF  M    +  N  T+ ++++AC  +G L+LG+  
Sbjct: 349 RNTVTWTSIIAAHAREGFGEEAISLFRIMKRRHLIANNLTVVSILRACGSVGALLLGKEL 408

Query: 184 HGLVVRHGFNSNHVIVSSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTRNDLY 243
           H  ++++    N  I S+L+ +Y +   S DA  +  ++P  D + WT++IS  +     
Sbjct: 409 HAQIIKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSSLGHE 468

Query: 244 EDALGFFYLMLRTYSLSPDGFTFGSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVVESS 303
            +AL F   M++   + P+ FT+ S L ACAN   L  G  +H+    +    NV V S+
Sbjct: 469 SEALDFLKEMIQE-GVEPNPFTYSSALKACANSESLLIGRSIHSIAKKNHALSNVFVGSA 528

Query: 304 LVDMYGKCGAVEKSQRVFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGME----KID 363
           L+ MY KCG V ++ RVFD M ++N VSW A++  Y +NG   + + +   ME    ++D
Sbjct: 529 LIHMYAKCGFVSEAFRVFDSMPEKNLVSWKAMIMGYARNGFCREALKLMYRMEAEGFEVD 588

Query: 364 LYSFGTVIRAC 371
            Y F T++  C
Sbjct: 589 DYIFATILSTC 597

[Close]

BLAST of Cp4.1LG04g03350 vs. TAIR 10
Match: AT1G50270.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 197.6 bits (501), Expect = 2.0e-50
Identity = 104/297 (35.02%), Postives = 174/297 (58.59%), Query Frame = 0


Query: 80  QIHAHVLKSGLEADRFVGNSLLSLYFKLGSDFRLTRRVFDGLFVKDVVSWTSMITSYVRE 139
           Q HAH++K GL++D FV NSL+S Y   G  F    R+FDG   KDVV+WT+MI  +VR 
Sbjct: 124 QFHAHIVKFGLDSDPFVRNSLISGYSSSGL-FDFASRLFDGAEDKDVVTWTAMIDGFVRN 183

Query: 140 GKPGNAIELFWDMLDLGIEPNGFTLSAVIKACSEIGNLVLGRCFHGLVVRHGFNSNHVIV 199
           G    A+  F +M   G+  N  T+ +V+KA  ++ ++  GR  HGL +  G     V +
Sbjct: 184 GSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFI 243

Query: 200 -SSLIDMYGRNFASSDARQLFDEMPEPDAICWTSVISALTRNDLYEDALGFFYLMLRTYS 259
            SSL+DMYG+     DA+++FDEMP  + + WT++I+   ++  ++  +  F  ML++  
Sbjct: 244 GSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKS-D 303

Query: 260 LSPDGFTFGSVLTACANLGRLRQGEEVHAKVIAHGLGGNVVVESSLVDMYGKCGAVEKSQ 319
           ++P+  T  SVL+ACA++G L +G  VH  +I + +  N    ++L+D+Y KCG +E++ 
Sbjct: 304 VAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAI 363

Query: 320 RVFDRMSKRNSVSWSALLGVYCQNGDFEKVINIFRGMEKIDL----YSFGTVIRACA 372
            VF+R+ ++N  +W+A++  +  +G      ++F  M    +     +F  V+ ACA
Sbjct: 364 LVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACA 418

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g03350 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LR69	2.1e-124	59.68	Pentatricopeptide repeat-containing protein At1g03540 OS=Arabidopsis thaliana OX...	[more]
Q9LIQ7	1.1e-51	33.01	Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidop...	[more]
O81767	8.9e-51	33.24	Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana OX...	[more]
Q0WNP3	7.6e-50	34.08	Pentatricopeptide repeat-containing protein At4g18520, chloroplastic OS=Arabidop...	[more]
Q9LW63	2.9e-49	30.00	Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis th...	[more]

BLAST of Cp4.1LG04g03350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023529479.1	1.21e-269	100.00	pentatricopeptide repeat-containing protein At1g03540 [Cucurbita pepo subsp. pep...	[more]
KAG6589200.1	6.60e-267	99.19	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]
KAG7022900.1	1.54e-265	98.66	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]
XP_022988714.1	1.26e-264	97.85	pentatricopeptide repeat-containing protein At1g03540 [Cucurbita maxima]	[more]
XP_022930613.1	5.12e-264	98.12	pentatricopeptide repeat-containing protein At1g03540 [Cucurbita moschata]	[more]

BLAST of Cp4.1LG04g03350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JMC8	6.10e-265	97.85	pentatricopeptide repeat-containing protein At1g03540 OS=Cucurbita maxima OX=366...	[more]
A0A6J1EVR7	2.48e-264	98.12	pentatricopeptide repeat-containing protein At1g03540 OS=Cucurbita moschata OX=3...	[more]
A0A6J1D3F1	8.86e-234	87.10	pentatricopeptide repeat-containing protein At1g03540 OS=Momordica charantia OX=...	[more]
A0A0A0K5P0	9.87e-212	80.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047230 PE=4 SV=1	[more]
A0A5A7SR37	3.23e-210	79.89	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of Cp4.1LG04g03350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03540.1	1.5e-125	59.68	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT3G24000.1	7.5e-53	33.01	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G33990.1	6.3e-52	33.24	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G18520.1	5.4e-51	34.08	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G50270.1	2.0e-50	35.02	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 330..358 e-value: 4.6E-6 score: 26.5 coord: 198..223 e-value: 0.029 score: 14.6 coord: 302..328 e-value: 0.01 score: 16.0 coord: 229..255 e-value: 3.0E-4 score: 20.8
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 127..160 e-value: 5.8E-6 score: 24.1 coord: 228..262 e-value: 1.5E-4 score: 19.7 coord: 330..357 e-value: 3.0E-5 score: 21.9
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 124..171 e-value: 2.8E-12 score: 46.6
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 125..159 score: 12.441133
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 328..362 score: 10.259834
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 27..181 e-value: 2.5E-23 score: 84.9 coord: 182..281 e-value: 4.2E-18 score: 67.8
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 282..406 e-value: 7.5E-18 score: 67.0
None	No IPR available	PANTHER	PTHR24015	OS07G0578800 PROTEIN-RELATED	coord: 15..375
None	No IPR available	PANTHER	PTHR24015:SF328	OS06G0611200 PROTEIN	coord: 15..375

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g03350.1	Cp4.1LG04g03350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009451	RNA modification
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding