Cp4.1LG04g02600 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG04g02600
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG04: 7742815 .. 7743168 (+)
RNA-Seq ExpressionCp4.1LG04g02600
SyntenyCp4.1LG04g02600
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCATGCCAATTTCGAAAGGGCTCTCATTTCTGGGCCTTGTCGCCATCTTCATTTGCTTACTATTCATCGAAGTCGCCGACGCCCATTCCGGCCACTCCGGCACCCACGCTGTCGAGAAGCCCTGCCCCGGCGGAGGGGACCACTGTCATCACAGCGGCCGCATGGCCGCACAAACCGTAGACGAGGATGACGATTTTGATGACACGTATAAAGTTCCGGTGAAAGGTAGGATGGCAATGTCCATGTCGGAATCCACCGAGGATGCTGAAGAACGGGCGGTGGAAATGGAAATGGAGACAACTTCTCCAGAGGAACCGGTGAACCAAAAAGTGGTCGTCTTGGGGCATTGA

mRNA sequence

ATGGGCATGCCAATTTCGAAAGGGCTCTCATTTCTGGGCCTTGTCGCCATCTTCATTTGCTTACTATTCATCGAAGTCGCCGACGCCCATTCCGGCCACTCCGGCACCCACGCTGTCGAGAAGCCCTGCCCCGGCGGAGGGGACCACTGTCATCACAGCGGCCGCATGGCCGCACAAACCGTAGACGAGGATGACGATTTTGATGACACGTATAAAGTTCCGGTGAAAGGTAGGATGGCAATGTCCATGTCGGAATCCACCGAGGATGCTGAAGAACGGGCGGTGGAAATGGAAATGGAGACAACTTCTCCAGAGGAACCGGTGAACCAAAAAGTGGTCGTCTTGGGGCATTGA

Coding sequence (CDS)

ATGGGCATGCCAATTTCGAAAGGGCTCTCATTTCTGGGCCTTGTCGCCATCTTCATTTGCTTACTATTCATCGAAGTCGCCGACGCCCATTCCGGCCACTCCGGCACCCACGCTGTCGAGAAGCCCTGCCCCGGCGGAGGGGACCACTGTCATCACAGCGGCCGCATGGCCGCACAAACCGTAGACGAGGATGACGATTTTGATGACACGTATAAAGTTCCGGTGAAAGGTAGGATGGCAATGTCCATGTCGGAATCCACCGAGGATGCTGAAGAACGGGCGGTGGAAATGGAAATGGAGACAACTTCTCCAGAGGAACCGGTGAACCAAAAAGTGGTCGTCTTGGGGCATTGA

Protein sequence

MGMPISKGLSFLGLVAIFICLLFIEVADAHSGHSGTHAVEKPCPGGGDHCHHSGRMAAQTVDEDDDFDDTYKVPVKGRMAMSMSESTEDAEERAVEMEMETTSPEEPVNQKVVVLGH
Homology
BLAST of Cp4.1LG04g02600 vs. NCBI nr
Match: KAG6589281.1 (hypothetical protein SDJN03_17846, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 224 bits (570), Expect = 1.63e-73
Identity = 111/115 (96.52%), Postives = 113/115 (98.26%), Query Frame = 0

Query: 3   MPISKGLSFLGLVAIFICLLFIEVADAHSGHSGTHAVEKPCPGGGDHCHHSGRMAAQTVD 62
           MPISKGLSFLGLVAIFICLLFIEVADAHSGHSGTHAVEKPCPGGG+HCHHSGRMAAQTVD
Sbjct: 1   MPISKGLSFLGLVAIFICLLFIEVADAHSGHSGTHAVEKPCPGGGEHCHHSGRMAAQTVD 60

Query: 63  EDDDFDDTYKVPVKGRMAMSMSESTEDAEERAVEMEMETTSPEEPVNQKVVVLGH 117
           EDDDFDDTYK PVKGRMAMSMSESTEDAEERAVEME+ETTSPEEP NQKVVVLGH
Sbjct: 61  EDDDFDDTYKAPVKGRMAMSMSESTEDAEERAVEMEIETTSPEEPANQKVVVLGH 115

BLAST of Cp4.1LG04g02600 vs. NCBI nr
Match: KAG6572424.1 (hypothetical protein SDJN03_29152, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 105 bits (263), Expect = 9.87e-27
Identity = 64/114 (56.14%), Postives = 78/114 (68.42%), Query Frame = 0

Query: 15  VAIFICLLFIEVADAHSGHSGTHA----VEKPCPGG----GDHCHHSGRMAAQTV---DE 74
           +AIFI LLFI++A A   H G HA    VE  CPGG    GDHC+H GR+ +      D+
Sbjct: 4   LAIFISLLFIKLAHADPHHFGIHAIGHAVEPFCPGGYSDRGDHCNHIGRITSVNYGEDDD 63

Query: 75  DDDFDDTYKVPVKGRMAMSMSESTEDAEERAVEMEMETTSPEEPVNQKVVVLGH 117
           DDDFDDTYKV  K  MAMS+SEST+DAE+ AV +E+E  SPEE ++ KV VLGH
Sbjct: 64  DDDFDDTYKVLGKLSMAMSVSESTDDAEKEAVGLELEDISPEEQLSDKVTVLGH 117

BLAST of Cp4.1LG04g02600 vs. NCBI nr
Match: KAA0061659.1 (hypothetical protein E6C27_scaffold212G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 5.08e-17
Identity = 56/128 (43.75%), Postives = 80/128 (62.50%), Query Frame = 0

Query: 3   MPISKGLSFLGLVAIFICLLFIEVADAHSGHSGTHAV----EKPCPGG----GDHCHHSG 62
           M ISK LSF+ ++AI +     +VADA S H G HAV    E  CPGG    GDHC H G
Sbjct: 1   MGISKVLSFVCVIAILVS----KVADADSDHFGIHAVGHAVEPFCPGGYSDRGDHCQHLG 60

Query: 63  RMAAQTV-----DEDDDFDDTYKVPVKGRMAMSMSESTEDAEERAVEMEMETTSPEEPVN 117
           R+++        D+DD+FDD YKV   G++++S+S    DAE++A  +E+ T SP++ ++
Sbjct: 61  RISSVNYNENDDDDDDEFDDRYKVV--GKLSVSVSP---DAEDQADGLELGTISPDQQLS 119

BLAST of Cp4.1LG04g02600 vs. NCBI nr
Match: KAE8647343.1 (hypothetical protein Csa_003811 [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 3.19e-15
Identity = 54/110 (49.09%), Postives = 69/110 (62.73%), Query Frame = 0

Query: 3   MPISKGLSFLGLVAIFICLLFIEVADAHSGHSGTHAV----EKPCPGG----GDHCHHSG 62
           M ISKGLSF+ ++AI IC    +VADA + H G HAV    E  CPGG    GDHC H G
Sbjct: 4   MGISKGLSFVCVIAILIC----KVADADADHFGIHAVGHAVEPFCPGGYSDRGDHCQHLG 63

Query: 63  RMAAQTV---DEDDDFDDTYKVPVKGRMAMSMSESTEDAEERAVEMEMET 101
           R+++      D+DD+FDDTYKV  K    +S S S E AE+RA  +E+E+
Sbjct: 64  RISSVNYNENDDDDEFDDTYKVVGK----LSASLSPEAAEDRADGLELES 105

BLAST of Cp4.1LG04g02600 vs. NCBI nr
Match: KAE8075603.1 (hypothetical protein FH972_014299 [Carpinus fangiana])

HSP 1 Score: 50.8 bits (120), Expect = 3.06e-05
Identity = 43/124 (34.68%), Postives = 60/124 (48.39%), Query Frame = 0

Query: 3   MPISKGLSFLGLVAIFICLLFIEVADAHSG--HSGTHAV---EKPCPG----GGDHCHHS 62
           M IS+G+   GL+ +F+CLL I+ ++A     +   HAV   +  C G     GDHC   
Sbjct: 1   MTISRGVVLFGLMTLFVCLLLIKASEADDSAEYPPIHAVKHDDSKCEGIHNEEGDHCREE 60

Query: 63  GRMAAQTVDEDDDFDDTYKVPVKGRMAMSMSESTEDAEERAVEMEMETTSPEEPVNQKVV 117
                +    DDD DD+YKV    RMA+S  E        A  +     S  E ++ +VV
Sbjct: 61  EEEEEEEEVLDDDVDDSYKVV--NRMALSYHE--------AGSVNPFYDSDTELLDNRVV 114

BLAST of Cp4.1LG04g02600 vs. ExPASy TrEMBL
Match: A0A0A0KE60 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G421690 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.41e-19
Identity = 60/126 (47.62%), Postives = 78/126 (61.90%), Query Frame = 0

Query: 3   MPISKGLSFLGLVAIFICLLFIEVADAHSGHSGTHAV----EKPCPGG----GDHCHHSG 62
           M ISKGLSF+ ++AI IC    +VADA + H G HAV    E  CPGG    GDHC H G
Sbjct: 4   MGISKGLSFVCVIAILIC----KVADADADHFGIHAVGHAVEPFCPGGYSDRGDHCQHLG 63

Query: 63  RMAAQTV---DEDDDFDDTYKVPVKGRMAMSMSESTEDAEERAVEMEMETTSPEEPVNQK 117
           R+++      D+DD+FDDTYKV  K    +S S S E AE+RA  +E+   SP + ++ K
Sbjct: 64  RISSVNYNENDDDDEFDDTYKVVGK----LSASLSPEAAEDRADGLELGIFSPHDRLSVK 121

BLAST of Cp4.1LG04g02600 vs. ExPASy TrEMBL
Match: A0A5A7V7L4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold212G00280 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.46e-17
Identity = 56/128 (43.75%), Postives = 80/128 (62.50%), Query Frame = 0

Query: 3   MPISKGLSFLGLVAIFICLLFIEVADAHSGHSGTHAV----EKPCPGG----GDHCHHSG 62
           M ISK LSF+ ++AI +     +VADA S H G HAV    E  CPGG    GDHC H G
Sbjct: 1   MGISKVLSFVCVIAILVS----KVADADSDHFGIHAVGHAVEPFCPGGYSDRGDHCQHLG 60

Query: 63  RMAAQTV-----DEDDDFDDTYKVPVKGRMAMSMSESTEDAEERAVEMEMETTSPEEPVN 117
           R+++        D+DD+FDD YKV   G++++S+S    DAE++A  +E+ T SP++ ++
Sbjct: 61  RISSVNYNENDDDDDDEFDDRYKVV--GKLSVSVSP---DAEDQADGLELGTISPDQQLS 119

BLAST of Cp4.1LG04g02600 vs. ExPASy TrEMBL
Match: A0A2N9FLD3 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15974 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 6.95e-08
Identity = 43/125 (34.40%), Postives = 60/125 (48.00%), Query Frame = 0

Query: 3   MPISKGLSFLGLVAIFICLLFIEVADAHSG----------HSGTHAVEKPCPGGGDHCHH 62
           M IS+ +   GL  + +CLL I+V++A             H G H  +   P  GD C +
Sbjct: 1   MAISRSVLLFGLGTLLVCLLLIKVSEADESDHYAPIHVIKHDGIHC-DGAHPNNGDQCRN 60

Query: 63  SGRMAAQTVDEDDDFDDTYKVPVKGRMAMSMSESTEDAEERAVEMEMETTSPEEPVNQKV 117
                    + DDD DDTYKV  K  M++S S ST  +       E + TS EE +N  +
Sbjct: 61  DDD---DNEEVDDDVDDTYKVVNK--MSVSFSASTGQSSSSEDPSESDATSTEEELNNHM 119

BLAST of Cp4.1LG04g02600 vs. ExPASy TrEMBL
Match: A0A5N6R9F8 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_014299 PE=4 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.48e-05
Identity = 43/124 (34.68%), Postives = 60/124 (48.39%), Query Frame = 0

Query: 3   MPISKGLSFLGLVAIFICLLFIEVADAHSG--HSGTHAV---EKPCPG----GGDHCHHS 62
           M IS+G+   GL+ +F+CLL I+ ++A     +   HAV   +  C G     GDHC   
Sbjct: 1   MTISRGVVLFGLMTLFVCLLLIKASEADDSAEYPPIHAVKHDDSKCEGIHNEEGDHCREE 60

Query: 63  GRMAAQTVDEDDDFDDTYKVPVKGRMAMSMSESTEDAEERAVEMEMETTSPEEPVNQKVV 117
                +    DDD DD+YKV    RMA+S  E        A  +     S  E ++ +VV
Sbjct: 61  EEEEEEEEVLDDDVDDSYKVV--NRMALSYHE--------AGSVNPFYDSDTELLDNRVV 114

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6589281.11.63e-7396.52hypothetical protein SDJN03_17846, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6572424.19.87e-2756.14hypothetical protein SDJN03_29152, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0061659.15.08e-1743.75hypothetical protein E6C27_scaffold212G00280 [Cucumis melo var. makuwa][more]
KAE8647343.13.19e-1549.09hypothetical protein Csa_003811 [Cucumis sativus][more]
KAE8075603.13.06e-0534.68hypothetical protein FH972_014299 [Carpinus fangiana][more]
Match NameE-valueIdentityDescription
A0A0A0KE601.41e-1947.62Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G421690 PE=4 SV=1[more]
A0A5A7V7L42.46e-1743.75Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A2N9FLD36.95e-0834.40Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15974 PE=4 SV=1[more]
A0A5N6R9F81.48e-0534.68Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_014299 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..100
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..109

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g02600.1Cp4.1LG04g02600.1mRNA