Homology
BLAST of Cp4.1LG04g01890 vs. ExPASy Swiss-Prot
Match:
Q9SR19 (Rubisco accumulation factor 1.2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RAF1.2 PE=1 SV=1)
HSP 1 Score: 446.0 bits (1146), Expect = 4.9e-124
Identity = 250/458 (54.59%), Postives = 333/458 (72.71%), Query Frame = 0
Query: 10 SLSAAAAHTTTTTTTFLLHTPPLRLFLRRPPNLIS----ASLNPYPSPSPLV-----AKP 69
SL + + T +TT L T P+ + P +S AS+ P S + ++ A+
Sbjct: 3 SLKSLISSPFTQSTTHGLFTNPITRPVNPLPRTVSFTVTASMIPKRSSANMIPKNPPARQ 62
Query: 70 QVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPTIEEIT 129
Q+YQPFRPP SP+P+Q+RSLD+AGK+++LA R+ LWFEYAPLISSL +GFTPPTIEE+T
Sbjct: 63 QLYQPFRPPSSPIPTQFRSLDSAGKIEILAGRMALWFEYAPLISSLYTDGFTPPTIEELT 122
Query: 130 GIGGVQQNTLVVGAQVRESLVQTINDADPDLIAAFDTGGAELLYEIRLLNAEKRAAAARY 189
GI ++QN L+VGAQVR+S++Q+I+ +P+LI+AFDTGGAELLYEIRLL+ +R AAA +
Sbjct: 123 GISSIEQNRLIVGAQVRDSILQSIH--EPELISAFDTGGAELLYEIRLLSTTQRVAAATF 182
Query: 190 IVDNRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSNMSEAR 249
I+D +D KGAQDLARA+KD+P RRGD GW F+Y+ PGDCL+F++YR SRE N S+ R
Sbjct: 183 IIDRNIDSKGAQDLARAIKDYPNRRGDVGWLDFDYNLPGDCLSFLYYRQSRENKNPSDQR 242
Query: 250 TSALEDALKVAVTEEARSLIVRDL------EREGEGKDEAEEEIEAGVKVPVVRLKIGEV 309
TS L AL VA +E+A++ + +L E+E E K + EEE++A +++PVVRLK GEV
Sbjct: 243 TSMLLQALGVAESEKAKNRLNTELYGDKEAEKEKE-KKKKEEEVKA-IRIPVVRLKFGEV 302
Query: 310 AEATTVVVLPVCNGEEGGKGVGEAPMEVRSEGEFGVVVVEEGWRRWVVLPGWEPIAGLGK 369
AEAT+VVVLPVC EEG K + EAPME+ + G+F VV E+GW+RWVVLP W P+A +GK
Sbjct: 303 AEATSVVVLPVCKAEEGEKKILEAPMEIIAGGDFKVVEAEKGWKRWVVLPSWNPVAAIGK 362
Query: 370 GGVVVAFKDAR-ALPWRVNRWYKEEAILVVADRSRKEVEAGDGFYLTGATGNDGELKVQR 429
GGV V+F+D R LPW KEE +LVVADR R VEA DG+YL A + LK+++
Sbjct: 363 GGVAVSFRDDRKVLPWD----GKEEPLLVVADRVRNVVEADDGYYLVVA---ENGLKLEK 422
Query: 430 GSELMEMGLKESLGTVLLVVRPPKDMDDD-QLSDEDWD 451
GS+L +KESLG V+LVVRPP++ DDD Q S ++WD
Sbjct: 423 GSDLKAREVKESLGMVVLVVRPPREDDDDWQTSHQNWD 449
BLAST of Cp4.1LG04g01890 vs. ExPASy Swiss-Prot
Match:
Q9LKR8 (Rubisco accumulation factor 1.1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RAF1.1 PE=1 SV=1)
HSP 1 Score: 444.9 bits (1143), Expect = 1.1e-123
Identity = 261/452 (57.74%), Postives = 327/452 (72.35%), Query Frame = 0
Query: 1 MLSATAPATSLSAAAAHTTTTTTTFLLHTPPLRLFLRRPPNLISASLNPYPSPSPLVAKP 60
MLS T AT+LS++ T + T +T P+ R+P I+++L P S K
Sbjct: 1 MLSLT--ATTLSSSI--FTQSKTHGFFNTRPV---YRKPFTTITSALIP-ASNRQAPPKQ 60
Query: 61 QVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPTIEEIT 120
Q+YQPFRPPPSP+P ++RSLD AGK++VLA+RLGLWFEYAPLISSL EGFTPP+IEE+T
Sbjct: 61 QLYQPFRPPPSPIPPKFRSLDTAGKIEVLADRLGLWFEYAPLISSLYTEGFTPPSIEELT 120
Query: 121 GIGGVQQNTLVVGAQVRESLVQTINDADPDLIAAFDTGGAELLYEIRLLNAEKRAAAARY 180
GI GV+QN+L+VGAQVR+SLVQ + A P+LIAAFDT GAELLYEIRLLN +R AAA Y
Sbjct: 121 GISGVEQNSLIVGAQVRDSLVQ--SGAKPELIAAFDTNGAELLYEIRLLNTTQRVAAAEY 180
Query: 181 IVDNRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSNMSEAR 240
IVD+ D KGA DLARA+KDFP RRGD G F+Y+ PGDCL+FM YR SRE+ + SE R
Sbjct: 181 IVDHGFDTKGAGDLARAIKDFPHRRGDVGLGDFDYNLPGDCLSFMLYRKSREHRSPSEIR 240
Query: 241 TSALEDALKVAVTEEARSLIVRDLEREGEGKDEAEEEIEAGVKVPVVRLKIGEVAEATTV 300
T+ LE AL+ AVTE+A+ ++R+L E E + EEEI+ ++VPVVRL+ GEVA A++V
Sbjct: 241 TTLLEQALETAVTEKAKKAVLRELHGESEEERVKEEEIKI-IRVPVVRLRFGEVAGASSV 300
Query: 301 VVLPVCNGEEGGKGVGEAPMEVRSEGEFGVVVVEEGWRRWVVLPGWEPIAGLGKGGVVVA 360
VVLPVC EEG + + EAPME S GEFGVV E+ W RWVVLPGW+P+ + K GV V+
Sbjct: 301 VVLPVCKAEEGEEKLLEAPMEFESGGEFGVVEAEKDWSRWVVLPGWDPVVAVRK-GVAVS 360
Query: 361 FKDAR-ALPWRVNRWYKEEAILVVADRSRKEVEAGDGFYLTGATGNDGELKVQRGSELME 420
F D R LPW K EAI+VV DR +K VEA +G+Y DG +K+ RG L E
Sbjct: 361 FSDDREVLPWN----GKGEAIMVVIDREKKTVEADNGYYYLVVA--DGGMKLDRGLVLKE 420
Query: 421 MGLKESLGTVLLVVRPPKDMDDD-QLSDEDWD 451
G+ ESLG V+LVVRPP+D DD+ Q++DEDWD
Sbjct: 421 KGVNESLGMVVLVVRPPRDDDDEWQINDEDWD 434
BLAST of Cp4.1LG04g01890 vs. ExPASy Swiss-Prot
Match:
Q7XDY9 (Rubisco accumulation factor 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RAF1 PE=2 SV=1)
HSP 1 Score: 351.3 bits (900), Expect = 1.6e-95
Identity = 214/478 (44.77%), Postives = 291/478 (60.88%), Query Frame = 0
Query: 1 MLSATAP-----ATSLSAAAAHTTTTTTTFLLHTPPLRLFLRRPPNLISASLNPYP---- 60
MLS + P +T+ +AAA H F H R F + + + P
Sbjct: 1 MLSLSHPHPHPASTTAAAAARHHHRRNAPFAPHHRRRRRFAHLTTSAVILGPDGRPIGGG 60
Query: 61 --------SPSPLVAKPQVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLI 120
+P P Q+YQPF PPPSPLP +Y+ LD +L VL +RLGLW EYAPLI
Sbjct: 61 PRDNKLPFTPPPTAPPDQLYQPFHPPPSPLPDKYKDLDLGQRLAVLRDRLGLWHEYAPLI 120
Query: 121 SSLIQEGFTPPTIEEITGIGGVQQNTLVVGAQVRESLVQTINDADPDLIAAFDT-GGAEL 180
S+L +EGFTP +IEE TGI GV+QN++VV QVR+SLV +L+ FD+ GG EL
Sbjct: 121 SALSREGFTPSSIEEATGISGVEQNSVVVATQVRDSLVADEGGFPAELLRYFDSYGGPEL 180
Query: 181 LYEIRLLNAEKRAAAARYIVDNRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCL 240
LYE+R LNA +RA AAR+ +D RL+ +G ++LAR+MKDFP+RRGD GWE+F D PGDCL
Sbjct: 181 LYELRFLNARQRADAARHAIDRRLEPRGVRELARSMKDFPQRRGDDGWEAFTRDNPGDCL 240
Query: 241 AFMHYRLSREYSNMSEARTSALEDALKVAVTEEARSLIVRDLER-----EGEGKDEAEEE 300
AF +R SRE + +E + LE AL+V TE AR+ + +L+R GE D+ +
Sbjct: 241 AFARFRQSREAID-AEDSVAELERALEVVDTEPARARVEAELDRARRKAAGEEVDDEDGA 300
Query: 301 IEAGV-----KVPVVRLKIGEVAEATTVVVLPVCNGEEGGKGVGEAPMEVRSEGEFGVVV 360
A VPVVRL GEVAEATTV++LPV +GG+ + AP R++ + G+V
Sbjct: 301 ANAAAAASRPAVPVVRLMYGEVAEATTVLLLPVVREGDGGEALAHAPRRTRTDADLGMVE 360
Query: 361 VEEGWRRWVVLPGWEPIAGLGKGGVVVAFKDARALPWRVNRWYKEEAILVVADRSRKEVE 420
V++GW RW V+PGW P+A + VV+ D R LPWR + E +LVVA+R R+EV
Sbjct: 361 VDKGWTRWAVVPGWGPVAEVAGEAVVIELADGRTLPWRS---AEAERVLVVANRGRREV- 420
Query: 421 AGDGFYLTGATGNDGELKVQRGSELMEMGLKESLGTVLLVVRPPKDMDDDQLSDEDWD 451
DG Y+ +G L V++G +L G+ E+ VL+VVRPP+D +DD +SD++WD
Sbjct: 421 VEDGIYV---VEREGRLVVEKGRKLAAEGVGEAAAEVLVVVRPPRD-EDDMISDDEWD 469
BLAST of Cp4.1LG04g01890 vs. ExPASy Swiss-Prot
Match:
B4FR29 (Rubisco accumulation factor 1, chloroplastic OS=Zea mays OX=4577 GN=RAF1 PE=1 SV=1)
HSP 1 Score: 348.2 bits (892), Expect = 1.4e-94
Identity = 198/411 (48.18%), Postives = 273/411 (66.42%), Query Frame = 0
Query: 52 SPSPLVAKPQVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQEGF 111
+P P+ Q+YQPF PPPSPLP R+LD + +L +L +R+GLW EYAPLISSL ++GF
Sbjct: 62 TPPPMAPPGQLYQPFHPPPSPLPPSLRNLDLSERLQILRDRMGLWHEYAPLISSLSRDGF 121
Query: 112 TPPTIEEITGIGGVQQNTLVVGAQVRESLVQTINDA-DPDLIAAFDT-GGAELLYEIRLL 171
P +I+E TGI GV+QN LVV +QVR+SL+ A PDL+ FD+ GG E+LYE+R L
Sbjct: 122 NPSSIQEATGISGVEQNCLVVASQVRDSLLDDRAAAFPPDLLPYFDSLGGPEVLYELRFL 181
Query: 172 NAEKRAAAARYIVDNRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYRL 231
NA +RA AAR+ + RL+ KG ++LARAMK FPR RG++GWE+F+ D P DCLAF +R
Sbjct: 182 NARQRADAARHAIGYRLEPKGVRELARAMKGFPRWRGEEGWEAFSKDSPADCLAFARFRQ 241
Query: 232 SREYSNMSEARTSALEDALKVAVTEEARSLIVRDLE---REGEGKDEAEEEIE-----AG 291
SRE ++ + R + LE AL+V TE R+ + +LE R+ G++E +EE E A
Sbjct: 242 SREAIDVQD-RVAELERALQVVETESGRARVELELERARRKAAGEEEVDEEGEEDDAAAS 301
Query: 292 VK--VPVVRLKIGEVAEATTVVVLPVCNGEEGGKGVGEAPMEVRSEGEFGVVVVEEGWRR 351
++ V VVRL+ GEVAEATTV++LPV +G + AP +++ GVV V+ W R
Sbjct: 302 LRPGVTVVRLRYGEVAEATTVILLPVVRETDGVAAMESAPRRAKTDVGLGVVEVDRAWAR 361
Query: 352 WVVLPGWEPIAGLGKGGVVVAFKDARALPWRVNRWYKEEAILVVADRSRKEVEAGDGFYL 411
W V+PGW P+A VVV D R LPWR++ EE +LV+A+RS+KEV +G Y+
Sbjct: 362 WAVVPGWGPVAEAADDAVVVELADGRRLPWRMS---DEEPVLVIANRSKKEV-VEEGVYV 421
Query: 412 TGATGNDGELKVQRGSELMEMGLKESLGTVLLVVRPPKDMDDDQLSDEDWD 451
+G L V+RG +L E G+ + V++VVRPPKD +DD +SDE+WD
Sbjct: 422 ---LEREGRLVVERGKKLAEQGIAAAAAEVVIVVRPPKD-EDDMVSDEEWD 463
BLAST of Cp4.1LG04g01890 vs. ExPASy Swiss-Prot
Match:
Q8YLP6 (RuBisCO accumulation factor 1 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=raf1 PE=1 SV=1)
HSP 1 Score: 122.9 bits (307), Expect = 9.5e-27
Identity = 120/394 (30.46%), Postives = 191/394 (48.48%), Query Frame = 0
Query: 68 PPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPTIEEITGIGGVQQ 127
PP +P P + A L L + G W E+ I+SL + G+ P I E TG VQQ
Sbjct: 5 PPNAPNPENATNELAQELLRKLRQKQGNWVEWGQAIASLQKSGYNPQDIFEATGFEPVQQ 64
Query: 128 NTLVVGAQVRESLVQTINDADPDLIAAFDTGGAELLYEIRLLNAEKRAAAARYIVDNRLD 187
N ++VG+QV SL + + A +A + T G+++LYE+RLL E+RAAA +++D
Sbjct: 65 NQVIVGSQVYNSLEK--SGASAATLAHYATRGSDVLYELRLLTHEERAAAGDLTFTHKVD 124
Query: 188 GKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSNMSEARTSALEDA 247
A+++A+A+KDF R R E F+ ++PGD +A+ ++L+R+YS++ E R+ +
Sbjct: 125 ADEAREIAKAIKDFSRFRILP--EGFS-NHPGDAVAYQAWKLARQYSDLQE-RSRLIARG 184
Query: 248 LKVAVTEEARSLIVRDLEREGEGKDEAEEEIEAGVKVPVVRLKIGEVAEATTVVVLPVCN 307
L+ A +E AR I + L D P R E ++PV
Sbjct: 185 LRFAHSETARKQIEQLL------VDFTVVSQRPAPIPPFFRFD----TEDELPRIVPV-- 244
Query: 308 GEEGGKGVGEAPMEVRSEGEFGVVVVEE----------GWRRWVVLPGWEPIAGLGKGGV 367
VG+ P+ ++E V +VEE G + WV LPGW+ V
Sbjct: 245 -------VGQLPL--KAEELKAVPLVEEIEPFRLVKFSGEQAWVALPGWQ---------V 304
Query: 368 VVAFKDARALPWRVNRWYKEE-----AILVVADRSRKEVEAGDGFYLTGATGNDGELKVQ 427
++A +D + +R+ K+ +LVV DRS++E F +DGEL Q
Sbjct: 305 LLAAEDPVTILATSDRFPKQNQTEPGPVLVVVDRSQREWNDFSYF----VVDHDGELDFQ 355
Query: 428 RGSELMEMGLKESLGTVLLVVRPPKDMDDDQLSD 447
E + LG V+++VRP + +D++ D
Sbjct: 365 WFETKPEFPI---LGKVIILVRPRRILDENVTKD 355
BLAST of Cp4.1LG04g01890 vs. NCBI nr
Match:
XP_023531170.1 (rubisco accumulation factor 1.1, chloroplastic-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 869 bits (2246), Expect = 0.0
Identity = 450/450 (100.00%), Postives = 450/450 (100.00%), Query Frame = 0
Query: 1 MLSATAPATSLSAAAAHTTTTTTTFLLHTPPLRLFLRRPPNLISASLNPYPSPSPLVAKP 60
MLSATAPATSLSAAAAHTTTTTTTFLLHTPPLRLFLRRPPNLISASLNPYPSPSPLVAKP
Sbjct: 1 MLSATAPATSLSAAAAHTTTTTTTFLLHTPPLRLFLRRPPNLISASLNPYPSPSPLVAKP 60
Query: 61 QVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPTIEEIT 120
QVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPTIEEIT
Sbjct: 61 QVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPTIEEIT 120
Query: 121 GIGGVQQNTLVVGAQVRESLVQTINDADPDLIAAFDTGGAELLYEIRLLNAEKRAAAARY 180
GIGGVQQNTLVVGAQVRESLVQTINDADPDLIAAFDTGGAELLYEIRLLNAEKRAAAARY
Sbjct: 121 GIGGVQQNTLVVGAQVRESLVQTINDADPDLIAAFDTGGAELLYEIRLLNAEKRAAAARY 180
Query: 181 IVDNRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSNMSEAR 240
IVDNRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSNMSEAR
Sbjct: 181 IVDNRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSNMSEAR 240
Query: 241 TSALEDALKVAVTEEARSLIVRDLEREGEGKDEAEEEIEAGVKVPVVRLKIGEVAEATTV 300
TSALEDALKVAVTEEARSLIVRDLEREGEGKDEAEEEIEAGVKVPVVRLKIGEVAEATTV
Sbjct: 241 TSALEDALKVAVTEEARSLIVRDLEREGEGKDEAEEEIEAGVKVPVVRLKIGEVAEATTV 300
Query: 301 VVLPVCNGEEGGKGVGEAPMEVRSEGEFGVVVVEEGWRRWVVLPGWEPIAGLGKGGVVVA 360
VVLPVCNGEEGGKGVGEAPMEVRSEGEFGVVVVEEGWRRWVVLPGWEPIAGLGKGGVVVA
Sbjct: 301 VVLPVCNGEEGGKGVGEAPMEVRSEGEFGVVVVEEGWRRWVVLPGWEPIAGLGKGGVVVA 360
Query: 361 FKDARALPWRVNRWYKEEAILVVADRSRKEVEAGDGFYLTGATGNDGELKVQRGSELMEM 420
FKDARALPWRVNRWYKEEAILVVADRSRKEVEAGDGFYLTGATGNDGELKVQRGSELMEM
Sbjct: 361 FKDARALPWRVNRWYKEEAILVVADRSRKEVEAGDGFYLTGATGNDGELKVQRGSELMEM 420
Query: 421 GLKESLGTVLLVVRPPKDMDDDQLSDEDWD 450
GLKESLGTVLLVVRPPKDMDDDQLSDEDWD
Sbjct: 421 GLKESLGTVLLVVRPPKDMDDDQLSDEDWD 450
BLAST of Cp4.1LG04g01890 vs. NCBI nr
Match:
KAG6588314.1 (Rubisco accumulation factor 1.2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020875.1 Rubisco accumulation factor 1.2, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 847 bits (2189), Expect = 3.24e-309
Identity = 440/450 (97.78%), Postives = 445/450 (98.89%), Query Frame = 0
Query: 1 MLSATAPATSLSAAAAHTTTTTTTFLLHTPPLRLFLRRPPNLISASLNPYPSPSPLVAKP 60
MLSATAPATSLSAAAAHTTTT FLLHTPPLRLFLRRPPNLISASLNP PSPSPLVAKP
Sbjct: 1 MLSATAPATSLSAAAAHTTTT---FLLHTPPLRLFLRRPPNLISASLNPSPSPSPLVAKP 60
Query: 61 QVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPTIEEIT 120
QVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPTIEEIT
Sbjct: 61 QVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPTIEEIT 120
Query: 121 GIGGVQQNTLVVGAQVRESLVQTINDADPDLIAAFDTGGAELLYEIRLLNAEKRAAAARY 180
GIGGVQQNTLVVGAQVRESLVQTINDADPDLIAAFDTGG+ELLYEIRLLNAEKRAAAARY
Sbjct: 121 GIGGVQQNTLVVGAQVRESLVQTINDADPDLIAAFDTGGSELLYEIRLLNAEKRAAAARY 180
Query: 181 IVDNRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSNMSEAR 240
IV+NRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSNMSEAR
Sbjct: 181 IVENRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSNMSEAR 240
Query: 241 TSALEDALKVAVTEEARSLIVRDLEREGEGKDEAEEEIEAGVKVPVVRLKIGEVAEATTV 300
T+ALEDALKVAVTEEARSLIVRDLEREGEGKDEAEEEIEAGV+VPVVRLKIGEVAEATTV
Sbjct: 241 TAALEDALKVAVTEEARSLIVRDLEREGEGKDEAEEEIEAGVRVPVVRLKIGEVAEATTV 300
Query: 301 VVLPVCNGEEGGKGVGEAPMEVRSEGEFGVVVVEEGWRRWVVLPGWEPIAGLGKGGVVVA 360
VVLPVCNGEEGGKGVGEAPMEVRSEGEFGVVV EEGWRRWVVLPGWEPIAGLGKGGVVVA
Sbjct: 301 VVLPVCNGEEGGKGVGEAPMEVRSEGEFGVVVAEEGWRRWVVLPGWEPIAGLGKGGVVVA 360
Query: 361 FKDARALPWRVNRWYKEEAILVVADRSRKEVEAGDGFYLTGATGNDGELKVQRGSELMEM 420
FKDARALPWRVNRWYKEEAILVVADRSRKEVEAGDGFYLTGATG+DGELKVQRGSELMEM
Sbjct: 361 FKDARALPWRVNRWYKEEAILVVADRSRKEVEAGDGFYLTGATGSDGELKVQRGSELMEM 420
Query: 421 GLKESLGTVLLVVRPPKDMDDDQLSDEDWD 450
GLKESLGTVLLVVRPPKDMDDDQLSDEDWD
Sbjct: 421 GLKESLGTVLLVVRPPKDMDDDQLSDEDWD 447
BLAST of Cp4.1LG04g01890 vs. NCBI nr
Match:
XP_022965491.1 (rubisco accumulation factor 1.1, chloroplastic-like [Cucurbita maxima])
HSP 1 Score: 846 bits (2186), Expect = 3.24e-308
Identity = 436/450 (96.89%), Postives = 443/450 (98.44%), Query Frame = 0
Query: 1 MLSATAPATSLSAAAAHTTTTTTTFLLHTPPLRLFLRRPPNLISASLNPYPSPSPLVAKP 60
MLSATAPATSLSAAAAHTTTTTTTFLLHTPPLRLFLR PPNLISASLNP+PSPSPLVAKP
Sbjct: 31 MLSATAPATSLSAAAAHTTTTTTTFLLHTPPLRLFLRHPPNLISASLNPFPSPSPLVAKP 90
Query: 61 QVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPTIEEIT 120
QVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPTIEEIT
Sbjct: 91 QVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPTIEEIT 150
Query: 121 GIGGVQQNTLVVGAQVRESLVQTINDADPDLIAAFDTGGAELLYEIRLLNAEKRAAAARY 180
GIGGVQQNTLVVGAQVRESLVQTIND DPDLIAAFDTGGAELLYEIRLLNAEKRAAAARY
Sbjct: 151 GIGGVQQNTLVVGAQVRESLVQTINDTDPDLIAAFDTGGAELLYEIRLLNAEKRAAAARY 210
Query: 181 IVDNRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSNMSEAR 240
I++NRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSNMSEAR
Sbjct: 211 IMENRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSNMSEAR 270
Query: 241 TSALEDALKVAVTEEARSLIVRDLEREGEGKDEAEEEIEAGVKVPVVRLKIGEVAEATTV 300
T+AL DALKVAVTEEARSLIVRDLEREGEGKD AEEEIEAGV+VPVVRLKIGEVAEATTV
Sbjct: 271 TAALADALKVAVTEEARSLIVRDLEREGEGKDGAEEEIEAGVRVPVVRLKIGEVAEATTV 330
Query: 301 VVLPVCNGEEGGKGVGEAPMEVRSEGEFGVVVVEEGWRRWVVLPGWEPIAGLGKGGVVVA 360
VVLPVCNGEEGGKGV EAPMEVRSEGEFGVVV EEGWRRWVVLPGWEPIAGLGKGGVVV
Sbjct: 331 VVLPVCNGEEGGKGVREAPMEVRSEGEFGVVVAEEGWRRWVVLPGWEPIAGLGKGGVVVV 390
Query: 361 FKDARALPWRVNRWYKEEAILVVADRSRKEVEAGDGFYLTGATGNDGELKVQRGSELMEM 420
FKDAR+LPWRVNRWYKEEAILVVADRSRKEVEAGDGFY+TGATGNDGELKVQRGSELMEM
Sbjct: 391 FKDARSLPWRVNRWYKEEAILVVADRSRKEVEAGDGFYMTGATGNDGELKVQRGSELMEM 450
Query: 421 GLKESLGTVLLVVRPPKDMDDDQLSDEDWD 450
GLKESLGTVLLVVRPPKDMDDDQLSDEDWD
Sbjct: 451 GLKESLGTVLLVVRPPKDMDDDQLSDEDWD 480
BLAST of Cp4.1LG04g01890 vs. NCBI nr
Match:
XP_022933155.1 (rubisco accumulation factor 1.1, chloroplastic-like [Cucurbita moschata])
HSP 1 Score: 844 bits (2181), Expect = 5.37e-308
Identity = 439/450 (97.56%), Postives = 443/450 (98.44%), Query Frame = 0
Query: 1 MLSATAPATSLSAAAAHTTTTTTTFLLHTPPLRLFLRRPPNLISASLNPYPSPSPLVAKP 60
MLSATAPATSLSAAAAHTTTT FLLHTPPLRLFLRRPPN ISASLNP PSPSPLVAKP
Sbjct: 1 MLSATAPATSLSAAAAHTTTT---FLLHTPPLRLFLRRPPNPISASLNPSPSPSPLVAKP 60
Query: 61 QVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPTIEEIT 120
QVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPTIEEIT
Sbjct: 61 QVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPTIEEIT 120
Query: 121 GIGGVQQNTLVVGAQVRESLVQTINDADPDLIAAFDTGGAELLYEIRLLNAEKRAAAARY 180
GIGGVQQNTLVVGAQVRESLVQTINDADPDLIAAFDTGGAELLYEIRLLNAEKRAAAARY
Sbjct: 121 GIGGVQQNTLVVGAQVRESLVQTINDADPDLIAAFDTGGAELLYEIRLLNAEKRAAAARY 180
Query: 181 IVDNRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSNMSEAR 240
IV+NRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSNMSEAR
Sbjct: 181 IVENRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSNMSEAR 240
Query: 241 TSALEDALKVAVTEEARSLIVRDLEREGEGKDEAEEEIEAGVKVPVVRLKIGEVAEATTV 300
T+ALEDALKVAVTEEARSLIVRDLEREGEGKDE EEEIEAGV+VPVVRLKIGEVAEATTV
Sbjct: 241 TAALEDALKVAVTEEARSLIVRDLEREGEGKDEVEEEIEAGVRVPVVRLKIGEVAEATTV 300
Query: 301 VVLPVCNGEEGGKGVGEAPMEVRSEGEFGVVVVEEGWRRWVVLPGWEPIAGLGKGGVVVA 360
VVLPVCNGEEGGKGVGEAPMEVRSEGEFGVVV EEGWRRWVVLPGWEPIAGLGKGGVVVA
Sbjct: 301 VVLPVCNGEEGGKGVGEAPMEVRSEGEFGVVVAEEGWRRWVVLPGWEPIAGLGKGGVVVA 360
Query: 361 FKDARALPWRVNRWYKEEAILVVADRSRKEVEAGDGFYLTGATGNDGELKVQRGSELMEM 420
FKDARALPWRVNRWYKEEAILVVADRSRKEVEAGDGFYLTGATG+DGELKVQRGSELMEM
Sbjct: 361 FKDARALPWRVNRWYKEEAILVVADRSRKEVEAGDGFYLTGATGSDGELKVQRGSELMEM 420
Query: 421 GLKESLGTVLLVVRPPKDMDDDQLSDEDWD 450
GLKESLGTVLLVVRPPKDMDDDQLSDEDWD
Sbjct: 421 GLKESLGTVLLVVRPPKDMDDDQLSDEDWD 447
BLAST of Cp4.1LG04g01890 vs. NCBI nr
Match:
XP_038880540.1 (rubisco accumulation factor 1.1, chloroplastic-like [Benincasa hispida])
HSP 1 Score: 668 bits (1723), Expect = 3.02e-238
Identity = 359/456 (78.73%), Postives = 396/456 (86.84%), Query Frame = 0
Query: 1 MLSATAPATSLSA--AAAHTTTTTTTFLLHTP---PLRLFLRRPPNLISASLNPYPSPSP 60
MLS T A SL++ AAAHTT T LH P LRLFLRR PN ISA+LNP SP
Sbjct: 1 MLSTTTTANSLTSLSAAAHTTAT----FLHPPRDSSLRLFLRRRPNSISATLNP----SP 60
Query: 61 LVAKPQVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPT 120
L AK QVYQPFRPPPSPLPSQYRSLDA GKL+VL+NRLGLWFEYAPLISSLIQEGFTPPT
Sbjct: 61 LAAKQQVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPPT 120
Query: 121 IEEITGIGGVQQNTLVVGAQVRESLVQTINDADPDLIAAFDTGGAELLYEIRLLNAEKRA 180
+EEITGI GVQQN VVGAQVRESLVQ+ N+ADPD+IAAFDT GAELLYEIRLL+ EKRA
Sbjct: 121 LEEITGITGVQQNIFVVGAQVRESLVQS-NNADPDVIAAFDTSGAELLYEIRLLSTEKRA 180
Query: 181 AAARYIVDNRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSN 240
AAARYIV+NRLD KGAQDLARA+KDFPRRRGDKGWE F+Y+ PGDCLA+M+YRLSREY+N
Sbjct: 181 AAARYIVENRLDIKGAQDLARALKDFPRRRGDKGWECFDYEEPGDCLAYMYYRLSREYNN 240
Query: 241 MSEARTSALEDALKVAVTEEARSLIVRDLEREGEGKDEAEEEIEAGVKVPVVRLKIGEVA 300
SE RT+ALE+ALKV VTE+AR LIV DLE +G+GK+ EEEIE G++VPVVR+KIGEVA
Sbjct: 241 PSEPRTAALEEALKVVVTEKARDLIVGDLEGKGDGKEGVEEEIEVGIRVPVVRMKIGEVA 300
Query: 301 EATTVVVLPVCNGEEGGKGVGEAPMEVRSEGEFGVVVVEEGWRRWVVLPGWEPIAGLGKG 360
EATTV+V+PVC EG KGVGEAPME+RSEGEFGVVV E+ WR+WVVLPGWEP+ GL KG
Sbjct: 301 EATTVLVMPVCKAGEGEKGVGEAPMELRSEGEFGVVVAEKEWRKWVVLPGWEPVVGLVKG 360
Query: 361 G-VVVAFKDARALPWRVNRWYKEEAILVVADRSRKEVEAGDGFYLTGATGNDGELKVQRG 420
G VVVAF+DARALPWRVNRWYKEE ILVV DRSRKEV AGDGFYLTGAT GELKVQRG
Sbjct: 361 GGVVVAFEDARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLTGATVGGGELKVQRG 420
Query: 421 SELMEMGLKESLGTVLLVVRPPKDMDDDQLSDEDWD 450
+ LMEMG+KESLGTVLLVVRPPK+M+DDQLSDEDWD
Sbjct: 421 NALMEMGVKESLGTVLLVVRPPKEMEDDQLSDEDWD 447
BLAST of Cp4.1LG04g01890 vs. ExPASy TrEMBL
Match:
A0A6J1HLU0 (rubisco accumulation factor 1.1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111465376 PE=4 SV=1)
HSP 1 Score: 846 bits (2186), Expect = 1.57e-308
Identity = 436/450 (96.89%), Postives = 443/450 (98.44%), Query Frame = 0
Query: 1 MLSATAPATSLSAAAAHTTTTTTTFLLHTPPLRLFLRRPPNLISASLNPYPSPSPLVAKP 60
MLSATAPATSLSAAAAHTTTTTTTFLLHTPPLRLFLR PPNLISASLNP+PSPSPLVAKP
Sbjct: 31 MLSATAPATSLSAAAAHTTTTTTTFLLHTPPLRLFLRHPPNLISASLNPFPSPSPLVAKP 90
Query: 61 QVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPTIEEIT 120
QVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPTIEEIT
Sbjct: 91 QVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPTIEEIT 150
Query: 121 GIGGVQQNTLVVGAQVRESLVQTINDADPDLIAAFDTGGAELLYEIRLLNAEKRAAAARY 180
GIGGVQQNTLVVGAQVRESLVQTIND DPDLIAAFDTGGAELLYEIRLLNAEKRAAAARY
Sbjct: 151 GIGGVQQNTLVVGAQVRESLVQTINDTDPDLIAAFDTGGAELLYEIRLLNAEKRAAAARY 210
Query: 181 IVDNRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSNMSEAR 240
I++NRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSNMSEAR
Sbjct: 211 IMENRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSNMSEAR 270
Query: 241 TSALEDALKVAVTEEARSLIVRDLEREGEGKDEAEEEIEAGVKVPVVRLKIGEVAEATTV 300
T+AL DALKVAVTEEARSLIVRDLEREGEGKD AEEEIEAGV+VPVVRLKIGEVAEATTV
Sbjct: 271 TAALADALKVAVTEEARSLIVRDLEREGEGKDGAEEEIEAGVRVPVVRLKIGEVAEATTV 330
Query: 301 VVLPVCNGEEGGKGVGEAPMEVRSEGEFGVVVVEEGWRRWVVLPGWEPIAGLGKGGVVVA 360
VVLPVCNGEEGGKGV EAPMEVRSEGEFGVVV EEGWRRWVVLPGWEPIAGLGKGGVVV
Sbjct: 331 VVLPVCNGEEGGKGVREAPMEVRSEGEFGVVVAEEGWRRWVVLPGWEPIAGLGKGGVVVV 390
Query: 361 FKDARALPWRVNRWYKEEAILVVADRSRKEVEAGDGFYLTGATGNDGELKVQRGSELMEM 420
FKDAR+LPWRVNRWYKEEAILVVADRSRKEVEAGDGFY+TGATGNDGELKVQRGSELMEM
Sbjct: 391 FKDARSLPWRVNRWYKEEAILVVADRSRKEVEAGDGFYMTGATGNDGELKVQRGSELMEM 450
Query: 421 GLKESLGTVLLVVRPPKDMDDDQLSDEDWD 450
GLKESLGTVLLVVRPPKDMDDDQLSDEDWD
Sbjct: 451 GLKESLGTVLLVVRPPKDMDDDQLSDEDWD 480
BLAST of Cp4.1LG04g01890 vs. ExPASy TrEMBL
Match:
A0A6J1F451 (rubisco accumulation factor 1.1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111439956 PE=4 SV=1)
HSP 1 Score: 844 bits (2181), Expect = 2.60e-308
Identity = 439/450 (97.56%), Postives = 443/450 (98.44%), Query Frame = 0
Query: 1 MLSATAPATSLSAAAAHTTTTTTTFLLHTPPLRLFLRRPPNLISASLNPYPSPSPLVAKP 60
MLSATAPATSLSAAAAHTTTT FLLHTPPLRLFLRRPPN ISASLNP PSPSPLVAKP
Sbjct: 1 MLSATAPATSLSAAAAHTTTT---FLLHTPPLRLFLRRPPNPISASLNPSPSPSPLVAKP 60
Query: 61 QVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPTIEEIT 120
QVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPTIEEIT
Sbjct: 61 QVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPTIEEIT 120
Query: 121 GIGGVQQNTLVVGAQVRESLVQTINDADPDLIAAFDTGGAELLYEIRLLNAEKRAAAARY 180
GIGGVQQNTLVVGAQVRESLVQTINDADPDLIAAFDTGGAELLYEIRLLNAEKRAAAARY
Sbjct: 121 GIGGVQQNTLVVGAQVRESLVQTINDADPDLIAAFDTGGAELLYEIRLLNAEKRAAAARY 180
Query: 181 IVDNRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSNMSEAR 240
IV+NRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSNMSEAR
Sbjct: 181 IVENRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSNMSEAR 240
Query: 241 TSALEDALKVAVTEEARSLIVRDLEREGEGKDEAEEEIEAGVKVPVVRLKIGEVAEATTV 300
T+ALEDALKVAVTEEARSLIVRDLEREGEGKDE EEEIEAGV+VPVVRLKIGEVAEATTV
Sbjct: 241 TAALEDALKVAVTEEARSLIVRDLEREGEGKDEVEEEIEAGVRVPVVRLKIGEVAEATTV 300
Query: 301 VVLPVCNGEEGGKGVGEAPMEVRSEGEFGVVVVEEGWRRWVVLPGWEPIAGLGKGGVVVA 360
VVLPVCNGEEGGKGVGEAPMEVRSEGEFGVVV EEGWRRWVVLPGWEPIAGLGKGGVVVA
Sbjct: 301 VVLPVCNGEEGGKGVGEAPMEVRSEGEFGVVVAEEGWRRWVVLPGWEPIAGLGKGGVVVA 360
Query: 361 FKDARALPWRVNRWYKEEAILVVADRSRKEVEAGDGFYLTGATGNDGELKVQRGSELMEM 420
FKDARALPWRVNRWYKEEAILVVADRSRKEVEAGDGFYLTGATG+DGELKVQRGSELMEM
Sbjct: 361 FKDARALPWRVNRWYKEEAILVVADRSRKEVEAGDGFYLTGATGSDGELKVQRGSELMEM 420
Query: 421 GLKESLGTVLLVVRPPKDMDDDQLSDEDWD 450
GLKESLGTVLLVVRPPKDMDDDQLSDEDWD
Sbjct: 421 GLKESLGTVLLVVRPPKDMDDDQLSDEDWD 447
BLAST of Cp4.1LG04g01890 vs. ExPASy TrEMBL
Match:
A0A5A7VA63 (Rubisco accumulation factor 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G00440 PE=4 SV=1)
HSP 1 Score: 652 bits (1683), Expect = 2.30e-232
Identity = 344/437 (78.72%), Postives = 380/437 (86.96%), Query Frame = 0
Query: 22 TTTFLLHTP---PLRLFLRRPPNLISASLNPYPSPSPLVAKPQVYQPFRPPPSPLPSQYR 81
TT LH P PLRLFLRR N ISA +NP SPSPL AK QVYQPFRPPPSPLP QYR
Sbjct: 21 TTAIFLHQPIDSPLRLFLRRRSNPISAIINP--SPSPLAAKQQVYQPFRPPPSPLPPQYR 80
Query: 82 SLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPTIEEITGIGGVQQNTLVVGAQVRE 141
SLD GKL+VL+NRLGLWFEYAPLISSL+QEGFTPPT+EEITGI GVQQNT VVGAQVRE
Sbjct: 81 SLDTEGKLNVLSNRLGLWFEYAPLISSLLQEGFTPPTLEEITGISGVQQNTFVVGAQVRE 140
Query: 142 SLVQTINDADPDLIAAFDTGGAELLYEIRLLNAEKRAAAARYIVDNRLDGKGAQDLARAM 201
SLVQ+ ND+DPD+IA+FDT GAELLYEIRLL+ EKR AAA+YIV+NRLD KGAQDLARA+
Sbjct: 141 SLVQS-NDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYIVENRLDSKGAQDLARAI 200
Query: 202 KDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSNMSEARTSALEDALKVAVTEEARS 261
KDFPRR+GD+GWE F+YD GDCLA+M+YRLSREY+N SE RT+ALE+ALKV VTE+AR+
Sbjct: 201 KDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRTAALEEALKVGVTEKARN 260
Query: 262 LIVRDLEREGEGKDEAEEEIEAGVKVPVVRLKIGEVAEATTVVVLPVCNGEEGGKGVGEA 321
LIV DLER+G+GKD EEE AGV+VPVVRLKIGEVAEAT VVV+PVC EG KGVGEA
Sbjct: 261 LIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVVVMPVCKAGEGEKGVGEA 320
Query: 322 PMEVRSEGEFGVVVVEEGWRRWVVLPGWEPIAGLGKGG-VVVAFKDARALPWRVNRWYKE 381
PMEVRSEG+FGVVV E+GW RWVVLPGWEP+AGL KGG VVVAFKDAR LPWRVNRWYKE
Sbjct: 321 PMEVRSEGDFGVVVAEKGWSRWVVLPGWEPVAGLVKGGGVVVAFKDARVLPWRVNRWYKE 380
Query: 382 EAILVVADRSRKEVEAGDGFYLTGAT--GNDG--ELKVQRGSELMEMGLKESLGTVLLVV 441
E ILVVADRSRKEV AGDGFYL G T G DG ELKV+RG+ L EMG+KESLGTV+LVV
Sbjct: 381 EPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNALTEMGVKESLGTVVLVV 440
Query: 442 RPPKDMDDDQLSDEDWD 450
RPPK+M+DDQLSDEDWD
Sbjct: 441 RPPKEMEDDQLSDEDWD 454
BLAST of Cp4.1LG04g01890 vs. ExPASy TrEMBL
Match:
A0A5D3DZE4 (Rubisco accumulation factor 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G001420 PE=4 SV=1)
HSP 1 Score: 652 bits (1683), Expect = 2.30e-232
Identity = 344/437 (78.72%), Postives = 380/437 (86.96%), Query Frame = 0
Query: 22 TTTFLLHTP---PLRLFLRRPPNLISASLNPYPSPSPLVAKPQVYQPFRPPPSPLPSQYR 81
TT LH P PLRLFLRR N ISA +NP SPSPL AK QVYQPFRPPPSPLP QYR
Sbjct: 21 TTAIFLHQPIDSPLRLFLRRRSNPISAIINP--SPSPLAAKQQVYQPFRPPPSPLPPQYR 80
Query: 82 SLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPTIEEITGIGGVQQNTLVVGAQVRE 141
SLD GKL+VL+NRLGLWFEYAPLISSL+QEGFTPPT+EEITGI GVQQNT VVGAQVRE
Sbjct: 81 SLDTEGKLNVLSNRLGLWFEYAPLISSLLQEGFTPPTLEEITGISGVQQNTFVVGAQVRE 140
Query: 142 SLVQTINDADPDLIAAFDTGGAELLYEIRLLNAEKRAAAARYIVDNRLDGKGAQDLARAM 201
SLVQ+ ND+DPD+IA+FDT GAELLYEIRLL+ EKR AAA+YIV+NRLD KGAQDLARA+
Sbjct: 141 SLVQS-NDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYIVENRLDSKGAQDLARAI 200
Query: 202 KDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSNMSEARTSALEDALKVAVTEEARS 261
KDFPRR+GD+GWE F+YD GDCLA+M+YRLSREY+N SE RT+ALE+ALKV VTE+AR+
Sbjct: 201 KDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRTAALEEALKVVVTEKARN 260
Query: 262 LIVRDLEREGEGKDEAEEEIEAGVKVPVVRLKIGEVAEATTVVVLPVCNGEEGGKGVGEA 321
LIV DLER+G+GKD EEE AGV+VPVVRLKIGEVAEAT VVV+PVC EG KGVGEA
Sbjct: 261 LIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVVVMPVCKAGEGEKGVGEA 320
Query: 322 PMEVRSEGEFGVVVVEEGWRRWVVLPGWEPIAGLGKGG-VVVAFKDARALPWRVNRWYKE 381
PMEVRSEG+FGVVV E+GW RWVVLPGWEP+AGL KGG VVVAFKDAR LPWRVNRWYKE
Sbjct: 321 PMEVRSEGDFGVVVAEKGWSRWVVLPGWEPVAGLVKGGGVVVAFKDARVLPWRVNRWYKE 380
Query: 382 EAILVVADRSRKEVEAGDGFYLTGAT--GNDG--ELKVQRGSELMEMGLKESLGTVLLVV 441
E ILVVADRSRKEV AGDGFYL G T G DG ELKV+RG+ L EMG+KESLGTV+LVV
Sbjct: 381 EPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNALTEMGVKESLGTVVLVV 440
Query: 442 RPPKDMDDDQLSDEDWD 450
RPPK+M+DDQLSDEDWD
Sbjct: 441 RPPKEMEDDQLSDEDWD 454
BLAST of Cp4.1LG04g01890 vs. ExPASy TrEMBL
Match:
A0A1S3CHL8 (rubisco accumulation factor 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501013 PE=4 SV=1)
HSP 1 Score: 651 bits (1680), Expect = 6.59e-232
Identity = 343/437 (78.49%), Postives = 380/437 (86.96%), Query Frame = 0
Query: 22 TTTFLLHTP---PLRLFLRRPPNLISASLNPYPSPSPLVAKPQVYQPFRPPPSPLPSQYR 81
TT LH P PLRLFLRR N ISA +NP SPSPL AK QVYQPFRPPPSPLP QYR
Sbjct: 21 TTAIFLHQPIDSPLRLFLRRRSNPISAIINP--SPSPLAAKQQVYQPFRPPPSPLPPQYR 80
Query: 82 SLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPTIEEITGIGGVQQNTLVVGAQVRE 141
SLD GKL+VL+NRLGLWF+YAPLISSL+QEGFTPPT+EEITGI GVQQNT VVGAQVRE
Sbjct: 81 SLDTEGKLNVLSNRLGLWFQYAPLISSLLQEGFTPPTLEEITGISGVQQNTFVVGAQVRE 140
Query: 142 SLVQTINDADPDLIAAFDTGGAELLYEIRLLNAEKRAAAARYIVDNRLDGKGAQDLARAM 201
SLVQ+ ND+DPD+IA+FDT GAELLYEIRLL+ EKR AAA+YIV+NRLD KGAQDLARA+
Sbjct: 141 SLVQS-NDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYIVENRLDSKGAQDLARAI 200
Query: 202 KDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSNMSEARTSALEDALKVAVTEEARS 261
KDFPRR+GD+GWE F+YD GDCLA+M+YRLSREY+N SE RT+ALE+ALKV VTE+AR+
Sbjct: 201 KDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRTAALEEALKVVVTEKARN 260
Query: 262 LIVRDLEREGEGKDEAEEEIEAGVKVPVVRLKIGEVAEATTVVVLPVCNGEEGGKGVGEA 321
LIV DLER+G+GKD EEE AGV+VPVVRLKIGEVAEAT VVV+PVC EG KGVGEA
Sbjct: 261 LIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVVVMPVCKAGEGEKGVGEA 320
Query: 322 PMEVRSEGEFGVVVVEEGWRRWVVLPGWEPIAGLGKGG-VVVAFKDARALPWRVNRWYKE 381
PMEVRSEG+FGVVV E+GW RWVVLPGWEP+AGL KGG VVVAFKDAR LPWRVNRWYKE
Sbjct: 321 PMEVRSEGDFGVVVAEKGWSRWVVLPGWEPVAGLVKGGGVVVAFKDARVLPWRVNRWYKE 380
Query: 382 EAILVVADRSRKEVEAGDGFYLTGAT--GNDG--ELKVQRGSELMEMGLKESLGTVLLVV 441
E ILVVADRSRKEV AGDGFYL G T G DG ELKV+RG+ L EMG+KESLGTV+LVV
Sbjct: 381 EPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNALTEMGVKESLGTVVLVV 440
Query: 442 RPPKDMDDDQLSDEDWD 450
RPPK+M+DDQLSDEDWD
Sbjct: 441 RPPKEMEDDQLSDEDWD 454
BLAST of Cp4.1LG04g01890 vs. TAIR 10
Match:
AT3G04550.1 (unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28500.1); Has 110 Blast hits to 110 proteins in 51 species: Archae - 0; Bacteria - 67; Metazoa - 1; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )
HSP 1 Score: 446.0 bits (1146), Expect = 3.5e-125
Identity = 250/458 (54.59%), Postives = 333/458 (72.71%), Query Frame = 0
Query: 10 SLSAAAAHTTTTTTTFLLHTPPLRLFLRRPPNLIS----ASLNPYPSPSPLV-----AKP 69
SL + + T +TT L T P+ + P +S AS+ P S + ++ A+
Sbjct: 3 SLKSLISSPFTQSTTHGLFTNPITRPVNPLPRTVSFTVTASMIPKRSSANMIPKNPPARQ 62
Query: 70 QVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPTIEEIT 129
Q+YQPFRPP SP+P+Q+RSLD+AGK+++LA R+ LWFEYAPLISSL +GFTPPTIEE+T
Sbjct: 63 QLYQPFRPPSSPIPTQFRSLDSAGKIEILAGRMALWFEYAPLISSLYTDGFTPPTIEELT 122
Query: 130 GIGGVQQNTLVVGAQVRESLVQTINDADPDLIAAFDTGGAELLYEIRLLNAEKRAAAARY 189
GI ++QN L+VGAQVR+S++Q+I+ +P+LI+AFDTGGAELLYEIRLL+ +R AAA +
Sbjct: 123 GISSIEQNRLIVGAQVRDSILQSIH--EPELISAFDTGGAELLYEIRLLSTTQRVAAATF 182
Query: 190 IVDNRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSNMSEAR 249
I+D +D KGAQDLARA+KD+P RRGD GW F+Y+ PGDCL+F++YR SRE N S+ R
Sbjct: 183 IIDRNIDSKGAQDLARAIKDYPNRRGDVGWLDFDYNLPGDCLSFLYYRQSRENKNPSDQR 242
Query: 250 TSALEDALKVAVTEEARSLIVRDL------EREGEGKDEAEEEIEAGVKVPVVRLKIGEV 309
TS L AL VA +E+A++ + +L E+E E K + EEE++A +++PVVRLK GEV
Sbjct: 243 TSMLLQALGVAESEKAKNRLNTELYGDKEAEKEKE-KKKKEEEVKA-IRIPVVRLKFGEV 302
Query: 310 AEATTVVVLPVCNGEEGGKGVGEAPMEVRSEGEFGVVVVEEGWRRWVVLPGWEPIAGLGK 369
AEAT+VVVLPVC EEG K + EAPME+ + G+F VV E+GW+RWVVLP W P+A +GK
Sbjct: 303 AEATSVVVLPVCKAEEGEKKILEAPMEIIAGGDFKVVEAEKGWKRWVVLPSWNPVAAIGK 362
Query: 370 GGVVVAFKDAR-ALPWRVNRWYKEEAILVVADRSRKEVEAGDGFYLTGATGNDGELKVQR 429
GGV V+F+D R LPW KEE +LVVADR R VEA DG+YL A + LK+++
Sbjct: 363 GGVAVSFRDDRKVLPWD----GKEEPLLVVADRVRNVVEADDGYYLVVA---ENGLKLEK 422
Query: 430 GSELMEMGLKESLGTVLLVVRPPKDMDDD-QLSDEDWD 451
GS+L +KESLG V+LVVRPP++ DDD Q S ++WD
Sbjct: 423 GSDLKAREVKESLGMVVLVVRPPREDDDDWQTSHQNWD 449
BLAST of Cp4.1LG04g01890 vs. TAIR 10
Match:
AT5G28500.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04550.1); Has 109 Blast hits to 109 proteins in 49 species: Archae - 0; Bacteria - 67; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )
HSP 1 Score: 444.9 bits (1143), Expect = 7.7e-125
Identity = 261/452 (57.74%), Postives = 327/452 (72.35%), Query Frame = 0
Query: 1 MLSATAPATSLSAAAAHTTTTTTTFLLHTPPLRLFLRRPPNLISASLNPYPSPSPLVAKP 60
MLS T AT+LS++ T + T +T P+ R+P I+++L P S K
Sbjct: 1 MLSLT--ATTLSSSI--FTQSKTHGFFNTRPV---YRKPFTTITSALIP-ASNRQAPPKQ 60
Query: 61 QVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPTIEEIT 120
Q+YQPFRPPPSP+P ++RSLD AGK++VLA+RLGLWFEYAPLISSL EGFTPP+IEE+T
Sbjct: 61 QLYQPFRPPPSPIPPKFRSLDTAGKIEVLADRLGLWFEYAPLISSLYTEGFTPPSIEELT 120
Query: 121 GIGGVQQNTLVVGAQVRESLVQTINDADPDLIAAFDTGGAELLYEIRLLNAEKRAAAARY 180
GI GV+QN+L+VGAQVR+SLVQ + A P+LIAAFDT GAELLYEIRLLN +R AAA Y
Sbjct: 121 GISGVEQNSLIVGAQVRDSLVQ--SGAKPELIAAFDTNGAELLYEIRLLNTTQRVAAAEY 180
Query: 181 IVDNRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSNMSEAR 240
IVD+ D KGA DLARA+KDFP RRGD G F+Y+ PGDCL+FM YR SRE+ + SE R
Sbjct: 181 IVDHGFDTKGAGDLARAIKDFPHRRGDVGLGDFDYNLPGDCLSFMLYRKSREHRSPSEIR 240
Query: 241 TSALEDALKVAVTEEARSLIVRDLEREGEGKDEAEEEIEAGVKVPVVRLKIGEVAEATTV 300
T+ LE AL+ AVTE+A+ ++R+L E E + EEEI+ ++VPVVRL+ GEVA A++V
Sbjct: 241 TTLLEQALETAVTEKAKKAVLRELHGESEEERVKEEEIKI-IRVPVVRLRFGEVAGASSV 300
Query: 301 VVLPVCNGEEGGKGVGEAPMEVRSEGEFGVVVVEEGWRRWVVLPGWEPIAGLGKGGVVVA 360
VVLPVC EEG + + EAPME S GEFGVV E+ W RWVVLPGW+P+ + K GV V+
Sbjct: 301 VVLPVCKAEEGEEKLLEAPMEFESGGEFGVVEAEKDWSRWVVLPGWDPVVAVRK-GVAVS 360
Query: 361 FKDAR-ALPWRVNRWYKEEAILVVADRSRKEVEAGDGFYLTGATGNDGELKVQRGSELME 420
F D R LPW K EAI+VV DR +K VEA +G+Y DG +K+ RG L E
Sbjct: 361 FSDDREVLPWN----GKGEAIMVVIDREKKTVEADNGYYYLVVA--DGGMKLDRGLVLKE 420
Query: 421 MGLKESLGTVLLVVRPPKDMDDD-QLSDEDWD 451
G+ ESLG V+LVVRPP+D DD+ Q++DEDWD
Sbjct: 421 KGVNESLGMVVLVVRPPRDDDDEWQINDEDWD 434
BLAST of Cp4.1LG04g01890 vs. TAIR 10
Match:
AT5G28500.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04550.1). )
HSP 1 Score: 276.9 bits (707), Expect = 2.8e-74
Identity = 163/277 (58.84%), Postives = 206/277 (74.37%), Query Frame = 0
Query: 1 MLSATAPATSLSAAAAHTTTTTTTFLLHTPPLRLFLRRPPNLISASLNPYPSPSPLVAKP 60
MLS T AT+LS++ T + T +T P+ R+P I+++L P S K
Sbjct: 1 MLSLT--ATTLSSSI--FTQSKTHGFFNTRPV---YRKPFTTITSALIP-ASNRQAPPKQ 60
Query: 61 QVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPTIEEIT 120
Q+YQPFRPPPSP+P ++RSLD AGK++VLA+RLGLWFEYAPLISSL EGFTPP+IEE+T
Sbjct: 61 QLYQPFRPPPSPIPPKFRSLDTAGKIEVLADRLGLWFEYAPLISSLYTEGFTPPSIEELT 120
Query: 121 GIGGVQQNTLVVGAQVRESLVQTINDADPDLIAAFDTGGAELLYEIRLLNAEKRAAAARY 180
GI GV+QN+L+VGAQVR+SLVQ + A P+LIAAFDT GAELLYEIRLLN +R AAA Y
Sbjct: 121 GISGVEQNSLIVGAQVRDSLVQ--SGAKPELIAAFDTNGAELLYEIRLLNTTQRVAAAEY 180
Query: 181 IVDNRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSNMSEAR 240
IVD+ D KGA DLARA+KDFP RRGD G F+Y+ PGDCL+FM YR SRE+ + SE R
Sbjct: 181 IVDHGFDTKGAGDLARAIKDFPHRRGDVGLGDFDYNLPGDCLSFMLYRKSREHRSPSEIR 240
Query: 241 TSALEDALKVAVTEEARSLIVRDLEREGEGKDEAEEE 278
T+ LE AL+ AVTE+A+ ++R+L GE ++E +E
Sbjct: 241 TTLLEQALETAVTEKAKKAVLREL--HGESEEERGKE 265
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q9SR19 | 4.9e-124 | 54.59 | Rubisco accumulation factor 1.2, chloroplastic OS=Arabidopsis thaliana OX=3702 G... | [more] |
Q9LKR8 | 1.1e-123 | 57.74 | Rubisco accumulation factor 1.1, chloroplastic OS=Arabidopsis thaliana OX=3702 G... | [more] |
Q7XDY9 | 1.6e-95 | 44.77 | Rubisco accumulation factor 1, chloroplastic OS=Oryza sativa subsp. japonica OX=... | [more] |
B4FR29 | 1.4e-94 | 48.18 | Rubisco accumulation factor 1, chloroplastic OS=Zea mays OX=4577 GN=RAF1 PE=1 SV... | [more] |
Q8YLP6 | 9.5e-27 | 30.46 | RuBisCO accumulation factor 1 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX ... | [more] |
Match Name | E-value | Identity | Description | |
XP_023531170.1 | 0.0 | 100.00 | rubisco accumulation factor 1.1, chloroplastic-like [Cucurbita pepo subsp. pepo] | [more] |
KAG6588314.1 | 3.24e-309 | 97.78 | Rubisco accumulation factor 1.2, chloroplastic, partial [Cucurbita argyrosperma ... | [more] |
XP_022965491.1 | 3.24e-308 | 96.89 | rubisco accumulation factor 1.1, chloroplastic-like [Cucurbita maxima] | [more] |
XP_022933155.1 | 5.37e-308 | 97.56 | rubisco accumulation factor 1.1, chloroplastic-like [Cucurbita moschata] | [more] |
XP_038880540.1 | 3.02e-238 | 78.73 | rubisco accumulation factor 1.1, chloroplastic-like [Benincasa hispida] | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1HLU0 | 1.57e-308 | 96.89 | rubisco accumulation factor 1.1, chloroplastic-like OS=Cucurbita maxima OX=3661 ... | [more] |
A0A6J1F451 | 2.60e-308 | 97.56 | rubisco accumulation factor 1.1, chloroplastic-like OS=Cucurbita moschata OX=366... | [more] |
A0A5A7VA63 | 2.30e-232 | 78.72 | Rubisco accumulation factor 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... | [more] |
A0A5D3DZE4 | 2.30e-232 | 78.72 | Rubisco accumulation factor 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... | [more] |
A0A1S3CHL8 | 6.59e-232 | 78.49 | rubisco accumulation factor 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10350... | [more] |
Match Name | E-value | Identity | Description | |
AT3G04550.1 | 3.5e-125 | 54.59 | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplas... | [more] |
AT5G28500.1 | 7.7e-125 | 57.74 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |
AT5G28500.2 | 2.8e-74 | 58.84 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |