Cp4.1LG04g00300 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG04g00300
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionRibosome assembly factor mrt4
LocationCp4.1LG04: 1889082 .. 1893157 (+)
RNA-Seq ExpressionCp4.1LG04g00300
SyntenyCp4.1LG04g00300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGACACCTATTTATACCCTTAAAACCTTCTTTCCGCCCTCACTCATCATAGCCAGCCGCATCACTCACTTTTATCGCCGTTTCCTTCTACGCCCTATCGGTAAGCCCTCCCTCGCCCTCTCCGGTAACCCTCGTTCTTCTCGTTCTTCTCGTTCTTCTTCTCTCTTTCTCCCTCACGGAACTTATGAATCTGCCGTCTTAGCAGGTACCGAAGTTATTTGCAACGATCAAAGATGCCCAAGTCGAAGCGTGATAGACCAGGTCCGTTTTCATAGCTTTGCTCATATTCATGCCTAAATCGCTCTTCTTTTGGATATAAAAGAATTTGGTATTTGTTAGGGTAGGTATTGTTTAGGTTTGAGATCATATTGATATCTCTTCACCAGTAATTGAGAGATTTCACACTTTACCTTCGTTCTTACGGTAGTCCTACATGTTCATAGTACGTTTCCTGGTAGGTCAGATTTACGAAAGAATTTTGATTGCTTAGTATTTTAGCTCCATATTTTTCTTCTAAGGTTCTTCCACGTTCTAAAGAAGTATGCACTGTGTTACTTGAGCAAACATTTCAAGAGTGTGGAATTTGTGGGGATATCCTATTAGTGGGTTGGTTACAACTTGATGGTCTGTGTTTGTTAAAATTTGAGGAATAACTTGAGTATCTATTGTGTTAGGCTGAGGTAGACAGGGCTGTAGACAAGCCTCAAGCACGTTTTCGCTGATTGTAGGAGTCGCTGTAGTTTGCCTCAGAAGTTAGTTTGAGCTTTATAGTGTGATGGAAGAACCATTGTAGTATAAGGTGTTTCCAAGGGGTGGCTGAGGTGAAAGGTTTCTGTCTATATGCAAAATGTAGAGTTGCTTACAACACAGGGAGCTAAAGTTAAACACAGATCAATTTTTTAAATAAGAATAAGGAATATTTTTAGTAGGGTAATGAATGTTGTTAAAGAGAAACCAAACTGTGAATCTGGTTGAACTTAATGACTGCTTTAACATTAGAAATATGCTTAAATTTGTTATTTTAATTCGAGGTTTTTGTTAAACTATGGGCTAGTCTGTCTGAGTTATGTTCTTGTCAAAAGTACTATGCAATTTAAGAATTTAAATGACATGTGGTGGTTGTATTCAGTGTCAAATATGTGTGGGTTTTTAGTTAATAGAGGAAAAATTCAACAATTCAGTCTACTGTCAACTGTTTTGACTAATTGTTTGCTGTTTGATGGGATAAATGCAGTTACTTTATCAAAAACCAAGAAGAAAGGAAGGGAACATAAGAAATCAATGGTGGATCTAATCAGGCAGGCTGTGGAAAATTACAACTCAATTTATGTTTTCACTGTTGAGAACATGAGAAACCTCAAGTTCAAGGAACTCAGGGAGCAACTAAAGTCGTCTAGCAGGCAAGTTGTATTTTCTGACTTTTTTTATTGTATATTTTCTGCATCACTTCAAATATTAATTAGTGATGAGAATGTTACTTCCTATATGTTGTTTGATTTGTGTTTTGTTGGAAGAAAGGAGAAAATGAAAATATTGAATGGCATGTTTTAGAACTTGAATAAAAATGAATAGCATGTTCTAGGAGAAAAGATGAGACCATTTGGTAACAGGTTATGGTAACAGCATTGCTTTATGATCTTAAATGTAGTATCTGTTGATATGATTACAGAGCAACCTTCTGTCCTTGTTTTAAGAAGCGTCAATCAAAAAAGGTTTACAACCTTCATCGTCCTTCTTCCCCTTGTGCTTGATGTGGTCTCACCTGGGGCTGCAGCTTGTATACATTTGTTCTCTTTATTCTTTTTCCCTTTTTAAGCATGAATGATATGAAAAATATATTAACTCACCTTGGAATTATATTTTAGCCGTACATTATTGTCTTTGGCCTCTGATGCTTGTCTACATTTTTGAAGTGTAGAAATGTTTAAGCCTCTGGTCACTAATTGGGATATTTTGTTTGTGAACTTTGTTTAGTGCAATTTTTGAAGTGATGCTGCATTTGAGTGGCGCTCACTCTATTTCTCTAATGAAATGATTTTGACCTTATCTGACCTGACTGTACCTTACATGGATTCCCAAATTGATTTTCTTTTCTCTCATGGATAGATTGTTTTTTGGAGCAAACAAAGTCATGCAGGTTTCTCTTGGTCGAACTGCTTCCGAAGAGATTCAACCAGGCCTATACAAGGTTTCTAAGGTGAACCACTTTTTCCATATTGCATATAATTCAAGTGCTCTTTTTCTTTGTAACTTTAACGAATTAACATCCACTCTTCTATTTTTCAGCTTCTGCATGGCAATACTGGACTTTGTTTCACAAACTTACCGAAAGAAGAGGTTGAGAGGTAAACCAGACATGCTCTAGTTTTAACATTGGCAAGCACCGCCAAAAGCGATGAATTGTTAAGTTGCTATTTTGTTTTACAATTTAAATGCGCATATTTAAAATTTATTCATTATGTGTTCTTTTTTTGTTTTAGAAATTGAAGTATCTGATAAATTGTAGTTTCAGTTGATTTCCATATCTATGAATACAACATTCTGAAGTTTTGATTTGGGAAAGACTGTTAAAAGTGAACATAATTATTTTGGTGTTGGAAAGAACAAAAAAGAAAATGTTAAATCCTTGAAGTTGAAGTTTTAAAAAATTGAAACTGGTTCGTCTTCAAGGTCAAAACAAATTTCCAACTTCATATTGTCACATGCTTATGATGATTTTTCTGTGCTAAATTCGGTTGGAAGTCCTACTACCCTACTAGTGGAAAATGAATAAAGAAACCCAAAACAGAAACAAAAGAAGATTGTTTCTGTCAGTAGTAAGATTCTCTTAATGGGTTATTTACATTTCAATTTTAAAATAAGGGATTTCTGTATTTGATTTGGTTTACATTAATGCTTGATTTAATTTTCAATGTTTTGTTCTGCAGATTATTTAACGAGTATGTGGATTATGATTATGCAAGGACTGGAAGTGAAGCCACAGAAAAGGTTTCTGCCCCTTTTGAAATCAACTTATTTTAATTTTTCATCATTCTAATACTGATGTCACTTTTTGAGTGCACTGATTCAACAAAAAGGTCTAGAATCATTCCATATCGTTAGTGTTATAACATGCATGAACTTGGTGGTTGGTTTCCTTATCGAAGTTCAATGATATTAGGTTGAGCTTAAGGAAGGTCCTCTGGAGCAGTTCAGCCATGAAATGGAGCCTTCTCTACGGAAGCTTGGATTGCCAGTTCGCTTGAACAAGGGTCAGTAAACACACTTTTTGCTTGCAAGCCCTACTTATTGACGTAAACACACACTTTTTGCTTGCAAGCCTTACTTATGATAAACAAAAATTTGGTTGTAAATCATAATTGTTGAGGGAATTGCAGGTGTGGTGGAGCTTGTATCGGACTTTACTGTATGTGAGGAGGGCAAGTCTCTTTCACCAGAGTCAGCTGGCATACTGGTTTGTATCATTTCACGACTTTCTCTTTCTTTATATATATATATATATATATATATATATTGAATATGAATGCCTTGTAAACGAGGTTTGAAGTAGCACTTATTGATATCGATGTCGATATTTGTTTGGTTGCAGCGTGCGTTGGGGATAAGGATGGCAACTTTTCGCCTGAATTTGGTATGCAGGTGGAGTCCTGGTGAGTTTGAACTTTACATTGATGGACCAGATAATTCTGACATTGAAACTGCGTAGAAGAACCCCCAACACAATATTTTCCGATTAGAATTATATATATATATGGGATGGACGGATGAATGAATGCATGGATGAATGACTCTCCCCTAGGATTAGATGCTATAATTTGAATGGGATCGGGACATCTCTTTTCTTTCTTTCTTTCTTTTGTGTAAATTATTCAAGAAATTTTGAAGGGCATGTGCCCAAATCTTCAGTTTTGTTGTCTCTAGTGAGGATGAACGGATGTAACTGTGACTGGTTGGTAGATTTTGATTTGTATTATTGCCAGATCGTTGGTCTTTAAATTCTTCAAATATAGTATAGTATTATTTTATGAAATTCTGTATGTGTTATTTATTAGCTTAATGTAATGAGACCGAAGAAT

mRNA sequence

GAGACACCTATTTATACCCTTAAAACCTTCTTTCCGCCCTCACTCATCATAGCCAGCCGCATCACTCACTTTTATCGCCGTTTCCTTCTACGCCCTATCGGTACCGAAGTTATTTGCAACGATCAAAGATGCCCAAGTCGAAGCGTGATAGACCAGTTACTTTATCAAAAACCAAGAAGAAAGGAAGGGAACATAAGAAATCAATGGTGGATCTAATCAGGCAGGCTGTGGAAAATTACAACTCAATTTATGTTTTCACTGTTGAGAACATGAGAAACCTCAAGTTCAAGGAACTCAGGGAGCAACTAAAATTGTTTTTTGGAGCAAACAAAGTCATGCAGGTTTCTCTTGGTCGAACTGCTTCCGAAGAGATTCAACCAGGCCTATACAAGGTTTCTAAGCTTCTGCATGGCAATACTGGACTTTGTTTCACAAACTTACCGAAAGAAGAGGTTGAGAGATTATTTAACGAGTATGTGGATTATGATTATGCAAGGACTGGAAGTGAAGCCACAGAAAAGGTTGAGCTTAAGGAAGGTCCTCTGGAGCAGTTCAGCCATGAAATGGAGCCTTCTCTACGGAAGCTTGGATTGCCAGTTCGCTTGAACAAGGGTGTGGTGGAGCTTGTATCGGACTTTACTGTATGTGAGGAGGGCAAGTCTCTTTCACCAGAGTCAGCTGGCATACTGCGTGCGTTGGGGATAAGGATGGCAACTTTTCGCCTGAATTTGGTATGCAGGTGGAGTCCTGGTGAGTTTGAACTTTACATTGATGGACCAGATAATTCTGACATTGAAACTGCGTAGAAGAACCCCCAACACAATATTTTCCGATTAGAATTATATATATATATGGGATGGACGGATGAATGAATGCATGGATGAATGACTCTCCCCTAGGATTAGATGCTATAATTTGAATGGGATCGGGACATCTCTTTTCTTTCTTTCTTTCTTTTGTGTAAATTATTCAAGAAATTTTGAAGGGCATGTGCCCAAATCTTCAGTTTTGTTGTCTCTAGTGAGGATGAACGGATGTAACTGTGACTGGTTGGTAGATTTTGATTTGTATTATTGCCAGATCGTTGGTCTTTAAATTCTTCAAATATAGTATAGTATTATTTTATGAAATTCTGTATGTGTTATTTATTAGCTTAATGTAATGAGACCGAAGAAT

Coding sequence (CDS)

ATGCCCAAGTCGAAGCGTGATAGACCAGTTACTTTATCAAAAACCAAGAAGAAAGGAAGGGAACATAAGAAATCAATGGTGGATCTAATCAGGCAGGCTGTGGAAAATTACAACTCAATTTATGTTTTCACTGTTGAGAACATGAGAAACCTCAAGTTCAAGGAACTCAGGGAGCAACTAAAATTGTTTTTTGGAGCAAACAAAGTCATGCAGGTTTCTCTTGGTCGAACTGCTTCCGAAGAGATTCAACCAGGCCTATACAAGGTTTCTAAGCTTCTGCATGGCAATACTGGACTTTGTTTCACAAACTTACCGAAAGAAGAGGTTGAGAGATTATTTAACGAGTATGTGGATTATGATTATGCAAGGACTGGAAGTGAAGCCACAGAAAAGGTTGAGCTTAAGGAAGGTCCTCTGGAGCAGTTCAGCCATGAAATGGAGCCTTCTCTACGGAAGCTTGGATTGCCAGTTCGCTTGAACAAGGGTGTGGTGGAGCTTGTATCGGACTTTACTGTATGTGAGGAGGGCAAGTCTCTTTCACCAGAGTCAGCTGGCATACTGCGTGCGTTGGGGATAAGGATGGCAACTTTTCGCCTGAATTTGGTATGCAGGTGGAGTCCTGGTGAGTTTGAACTTTACATTGATGGACCAGATAATTCTGACATTGAAACTGCGTAG

Protein sequence

MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLKLFFGANKVMQVSLGRTASEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEGKSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA
Homology
[Close]
BLAST of Cp4.1LG04g00300 vs. ExPASy Swiss-Prot
Match: A4FV84 (mRNA turnover protein 4 homolog OS=Bos taurus OX=9913 GN=MRTO4 PE=2 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 2.7e-54
Identity = 106/208 (50.96%), Postives = 146/208 (70.19%), Query Frame = 0 

Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKRD+ V+L+KT KKG E K+++++ +R+ V+ Y  +++F+V NMRN K K++R   
Sbjct: 1   MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60

Query: 61  K---LFFGANKVMQVSLGRTASEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYV 120
           K   +FFG NKVM V+LGR+ S+E +  L++VSK L G  GL FTN  KEEV+  F +Y 
Sbjct: 61  KHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVDEWFTKYT 120

Query: 121 DYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEGK 180
           + DYAR G++AT  V L  GPLEQF H MEP LR+LGLP  L KGVV L+SD+ VC+EG 
Sbjct: 121 EMDYARAGNKATFTVNLDPGPLEQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCKEGD 180

Query: 181 SLSPESAGILRALGIRMATFRLNLVCRW 206
            L+PE A +L+  G  MA F++++   W
Sbjct: 181 VLTPEQARVLKLFGYEMAEFKVSIKYMW 208

[Close]
BLAST of Cp4.1LG04g00300 vs. ExPASy Swiss-Prot
Match: Q9UKD2 (mRNA turnover protein 4 homolog OS=Homo sapiens OX=9606 GN=MRTO4 PE=1 SV=2)

HSP 1 Score: 209.1 bits (531), Expect = 5.0e-53
Identity = 104/208 (50.00%), Postives = 143/208 (68.75%), Query Frame = 0 

Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKRD+ V+L+KT KKG E K+++++ +R+ V+ Y  +++F+V NMRN K K++R   
Sbjct: 1   MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60

Query: 61  K---LFFGANKVMQVSLGRTASEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYV 120
           K   +FFG NKVM V+LGR+ S+E +  L++VSK L G  GL FTN  KEEV   F +Y 
Sbjct: 61  KHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKRLRGEVGLLFTNRTKEEVNEWFTKYT 120

Query: 121 DYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEGK 180
           + DYAR G++A   V L  GPLEQF H MEP LR+LGLP  L +GVV L+SD+ VC+EG 
Sbjct: 121 EMDYARAGNKAAFTVSLDPGPLEQFPHSMEPQLRQLGLPTALKRGVVTLLSDYEVCKEGD 180

Query: 181 SLSPESAGILRALGIRMATFRLNLVCRW 206
            L+PE A +L+  G  MA F++ +   W
Sbjct: 181 VLTPEQARVLKLFGYEMAEFKVTIKYMW 208

[Close]
BLAST of Cp4.1LG04g00300 vs. ExPASy Swiss-Prot
Match: Q9D0I8 (mRNA turnover protein 4 homolog OS=Mus musculus OX=10090 GN=Mrto4 PE=1 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 8.6e-53
Identity = 105/208 (50.48%), Postives = 144/208 (69.23%), Query Frame = 0 

Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKRD+ V+L+KT KKG E K+++++ +R+ V+ Y  +++F+V NMRN K K++R   
Sbjct: 1   MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60

Query: 61  K---LFFGANKVMQVSLGRTASEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYV 120
           K   +FFG NKVM V+LGR+ S+E +  L++VSK L G  GL FTN  KEEV   F +Y 
Sbjct: 61  KHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVNEWFTKYT 120

Query: 121 DYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEGK 180
           + D+AR G++AT  V L  GPL+QF H MEP LR+LGLP  L KGVV L+SD+ VC+EG 
Sbjct: 121 EMDFARAGNKATLTVSLDPGPLKQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCKEGD 180

Query: 181 SLSPESAGILRALGIRMATFRLNLVCRW 206
            L+PE A IL+  G  MA F++ +   W
Sbjct: 181 VLTPEQARILKLFGYEMAEFKVIIKYMW 208

[Close]
BLAST of Cp4.1LG04g00300 vs. ExPASy Swiss-Prot
Match: Q86HD3 (Ribosome assembly factor mrt4 OS=Dictyostelium discoideum OX=44689 GN=mrt4 PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.9e-39
Identity = 84/215 (39.07%), Postives = 130/215 (60.47%), Query Frame = 0 

Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQ- 60
           M KSKR+  V ++K  K   E KK +V  I+  V+ Y  IY+FT ENMRN K K +R + 
Sbjct: 1   MVKSKRNVVVNMTKVTKNPGEKKKKLVSTIKDIVDQYKFIYLFTFENMRNNKLKSVRTEW 60

Query: 61  --LKLFFGANKVMQVSLGRTASEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYV 120
              K  FG NKV+ V LG++  +E++P L+K+++ L G  GL FTN PK++V   F  Y 
Sbjct: 61  STSKFLFGKNKVLSVGLGKSEEDELKPNLHKLTEHLEGECGLFFTNEPKDKVFEYFTNYS 120

Query: 121 DYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEGK 180
           + D+ R+G  + E + +KEGP+   +H ME  LR LGLP  L  GV+ +  ++T+CE G 
Sbjct: 121 EKDFPRSGFVSEETITIKEGPIVGMTHSMETYLRGLGLPTTLKNGVIFVDREYTLCEAGV 180

Query: 181 SLSPESAGILRALGIRMATFRLNLVCRWSPGEFEL 213
           +++PE + +L+     ++ F+ ++   W+  EF L
Sbjct: 181 AVTPEQSQLLKLFNHEISEFKFHIKGFWNEDEFTL 215

[Close]
BLAST of Cp4.1LG04g00300 vs. ExPASy Swiss-Prot
Match: Q7S302 (Ribosome assembly factor mrt4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=mrt4 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.3e-34
Identity = 83/233 (35.62%), Postives = 127/233 (54.51%), Query Frame = 0 

Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKR +   L++  KK RE K+ + + IR+ + NY   +VF+++NMRN   K++R++L
Sbjct: 1   MPKSKRAKVYNLTQVTKKNREQKEKLFENIRECIPNYQHCFVFSIDNMRNNYLKDVRKEL 60

Query: 61  ---KLFFGANKVMQVSLGRTASEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYV 120
              ++FFG  K+   +LG T  +    GL K+SK L G+ GL FTN    E++  F    
Sbjct: 61  NDCRIFFGKTKLTARALGTTPEDAQADGLDKLSKYLSGSVGLIFTNRDPSEIKDYFVNLT 120

Query: 121 DYDYARTGSEATEKVELKEGPLEQ------------FSHEMEPSLRKLGLPVRLNKGVVE 180
             D+AR GS AT  + +  GPL               SH +EP LR+LG+P R+ KG V 
Sbjct: 121 QVDFARAGSVATRTITIPSGPLYSTGGEVPAEHDVPVSHTLEPELRRLGMPTRMVKGKVC 180

Query: 181 L------VSDFTVCEEGKSLSPESAGILRALGIRMATFRLNLVCRWSPGEFEL 213
           L        D+ +C+EG++L      +L+   I ++ FR+ L+  WS    E+
Sbjct: 181 LGDEAGEGDDYVICKEGETLDSRQTRLLKLFSICLSEFRVKLLAYWSAASGEV 233

[Close]
BLAST of Cp4.1LG04g00300 vs. NCBI nr
Match: XP_023529350.1 (mRNA turnover protein 4 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 439 bits (1128), Expect = 5.75e-155
Identity = 225/229 (98.25%), Postives = 225/229 (98.25%), Query Frame = 0 

Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60

Query: 61  K----LFFGANKVMQVSLGRTASEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           K    LFFGANKVMQVSLGRTASEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY
Sbjct: 61  KSSSRLFFGANKVMQVSLGRTASEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120

Query: 121 VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG 180
           VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG
Sbjct: 121 VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG 180

Query: 181 KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 225
           KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA
Sbjct: 181 KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 229

[Close]
BLAST of Cp4.1LG04g00300 vs. NCBI nr
Match: XP_022933518.1 (mRNA turnover protein 4 homolog [Cucurbita moschata] >KAG6588508.1 mRNA turnover protein 4-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 437 bits (1125), Expect = 1.65e-154
Identity = 224/229 (97.82%), Postives = 225/229 (98.25%), Query Frame = 0 

Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60

Query: 61  K----LFFGANKVMQVSLGRTASEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           K    LFFGANKVMQVSLGRTAS+EIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY
Sbjct: 61  KSSSRLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120

Query: 121 VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG 180
           VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG
Sbjct: 121 VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG 180

Query: 181 KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 225
           KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA
Sbjct: 181 KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 229

[Close]
BLAST of Cp4.1LG04g00300 vs. NCBI nr
Match: XP_022969955.1 (mRNA turnover protein 4 homolog [Cucurbita maxima])

HSP 1 Score: 434 bits (1117), Expect = 2.73e-153
Identity = 223/229 (97.38%), Postives = 224/229 (97.82%), Query Frame = 0 

Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60

Query: 61  K----LFFGANKVMQVSLGRTASEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           K    LFFGANKVMQVSLGRTAS+EIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY
Sbjct: 61  KSSSRLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120

Query: 121 VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG 180
           VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG
Sbjct: 121 VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG 180

Query: 181 KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 225
           KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPD SDIETA
Sbjct: 181 KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDYSDIETA 229

[Close]
BLAST of Cp4.1LG04g00300 vs. NCBI nr
Match: XP_038902849.1 (mRNA turnover protein 4 homolog [Benincasa hispida])

HSP 1 Score: 419 bits (1078), Expect = 2.41e-147
Identity = 213/229 (93.01%), Postives = 222/229 (96.94%), Query Frame = 0 

Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGREHKKSMV+LIRQAVENYNSI+VFTVENMRNLKFKELREQL
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVELIRQAVENYNSIFVFTVENMRNLKFKELREQL 60

Query: 61  K----LFFGANKVMQVSLGRTASEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           K    LFFGANKVMQVSLGR+AS EI+PGL+KVSKLLHGNTGLCFTNLPKEEVERLFNEY
Sbjct: 61  KSSSRLFFGANKVMQVSLGRSASNEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120

Query: 121 VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG 180
           VDYDYARTGS ATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDF VCEEG
Sbjct: 121 VDYDYARTGSAATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEG 180

Query: 181 KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 225
           KSLSPESAGILRALGIRMATFRL+LVCRWSPG+FELYIDGPDNSD+E+A
Sbjct: 181 KSLSPESAGILRALGIRMATFRLHLVCRWSPGDFELYIDGPDNSDVESA 229

[Close]
BLAST of Cp4.1LG04g00300 vs. NCBI nr
Match: XP_022157470.1 (mRNA turnover protein 4 homolog [Momordica charantia])

HSP 1 Score: 412 bits (1060), Expect = 1.34e-144
Identity = 208/229 (90.83%), Postives = 220/229 (96.07%), Query Frame = 0 

Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60

Query: 61  K----LFFGANKVMQVSLGRTASEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           K    LFFGANKVMQVSLGRT S+EI+PGL+K+SKLLHGNTGLCFTNLPKEEVERLFNEY
Sbjct: 61  KSTSRLFFGANKVMQVSLGRTVSDEIRPGLHKISKLLHGNTGLCFTNLPKEEVERLFNEY 120

Query: 121 VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG 180
            DYDYARTGS ATEKVELKEGPLEQFSHEMEPSLRKLG+PVRLNKGVVELVSDF VCEEG
Sbjct: 121 EDYDYARTGSTATEKVELKEGPLEQFSHEMEPSLRKLGMPVRLNKGVVELVSDFVVCEEG 180

Query: 181 KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 225
           K+LSPESAGILRALGIRMA+FRLNLVCRWSPG+F+LYI+G DNSD+E+A
Sbjct: 181 KALSPESAGILRALGIRMASFRLNLVCRWSPGDFQLYIEGLDNSDVESA 229

[Close]
BLAST of Cp4.1LG04g00300 vs. ExPASy TrEMBL
Match: A0A6J1F4Z2 (Ribosome assembly factor mrt4 OS=Cucurbita moschata OX=3662 GN=LOC111440919 PE=3 SV=1)

HSP 1 Score: 437 bits (1125), Expect = 7.98e-155
Identity = 224/229 (97.82%), Postives = 225/229 (98.25%), Query Frame = 0 

Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60

Query: 61  K----LFFGANKVMQVSLGRTASEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           K    LFFGANKVMQVSLGRTAS+EIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY
Sbjct: 61  KSSSRLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120

Query: 121 VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG 180
           VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG
Sbjct: 121 VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG 180

Query: 181 KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 225
           KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA
Sbjct: 181 KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 229

[Close]
BLAST of Cp4.1LG04g00300 vs. ExPASy TrEMBL
Match: A0A6J1I1E2 (Ribosome assembly factor mrt4 OS=Cucurbita maxima OX=3661 GN=LOC111468997 PE=3 SV=1)

HSP 1 Score: 434 bits (1117), Expect = 1.32e-153
Identity = 223/229 (97.38%), Postives = 224/229 (97.82%), Query Frame = 0 

Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60

Query: 61  K----LFFGANKVMQVSLGRTASEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           K    LFFGANKVMQVSLGRTAS+EIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY
Sbjct: 61  KSSSRLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120

Query: 121 VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG 180
           VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG
Sbjct: 121 VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG 180

Query: 181 KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 225
           KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPD SDIETA
Sbjct: 181 KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDYSDIETA 229

[Close]
BLAST of Cp4.1LG04g00300 vs. ExPASy TrEMBL
Match: A0A6J1DT71 (Ribosome assembly factor mrt4 OS=Momordica charantia OX=3673 GN=LOC111024162 PE=3 SV=1)

HSP 1 Score: 412 bits (1060), Expect = 6.47e-145
Identity = 208/229 (90.83%), Postives = 220/229 (96.07%), Query Frame = 0 

Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60

Query: 61  K----LFFGANKVMQVSLGRTASEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           K    LFFGANKVMQVSLGRT S+EI+PGL+K+SKLLHGNTGLCFTNLPKEEVERLFNEY
Sbjct: 61  KSTSRLFFGANKVMQVSLGRTVSDEIRPGLHKISKLLHGNTGLCFTNLPKEEVERLFNEY 120

Query: 121 VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG 180
            DYDYARTGS ATEKVELKEGPLEQFSHEMEPSLRKLG+PVRLNKGVVELVSDF VCEEG
Sbjct: 121 EDYDYARTGSTATEKVELKEGPLEQFSHEMEPSLRKLGMPVRLNKGVVELVSDFVVCEEG 180

Query: 181 KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 225
           K+LSPESAGILRALGIRMA+FRLNLVCRWSPG+F+LYI+G DNSD+E+A
Sbjct: 181 KALSPESAGILRALGIRMASFRLNLVCRWSPGDFQLYIEGLDNSDVESA 229

[Close]
BLAST of Cp4.1LG04g00300 vs. ExPASy TrEMBL
Match: A0A6P5T8Z8 (Ribosome assembly factor mrt4 OS=Prunus avium OX=42229 GN=LOC110764858 PE=3 SV=1)

HSP 1 Score: 352 bits (904), Expect = 3.80e-121
Identity = 175/229 (76.42%), Postives = 205/229 (89.52%), Query Frame = 0 

Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGREHK+++V+ IRQA E+Y+S+YVF+ ENMRNLKFKE R+QL
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKETIVNSIRQAAEDYSSVYVFSFENMRNLKFKEFRDQL 60

Query: 61  K----LFFGANKVMQVSLGRTASEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           K     F G+NKVMQ+SLGR+ S+EI+P L+K+SK+LHGN GLCFTNLPKEEVERLFNEY
Sbjct: 61  KSSSRFFLGSNKVMQISLGRSDSDEIRPDLHKISKVLHGNAGLCFTNLPKEEVERLFNEY 120

Query: 121 VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG 180
            +YD+ARTGS ATEKVEL+EGPLEQF+HEMEP LRK G+PVRLNKGVVELVSDF VC+EG
Sbjct: 121 KEYDFARTGSIATEKVELQEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFLVCDEG 180

Query: 181 KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 225
           KSLSPESA ILR LGI+MATFRL+L+ RWSPGEFELY  GPD+S +E++
Sbjct: 181 KSLSPESARILRLLGIKMATFRLHLISRWSPGEFELYGPGPDDSGVESS 229

[Close]
BLAST of Cp4.1LG04g00300 vs. ExPASy TrEMBL
Match: A0A6P4AGB2 (Ribosome assembly factor mrt4 OS=Ziziphus jujuba OX=326968 GN=LOC107427781 PE=3 SV=1)

HSP 1 Score: 352 bits (903), Expect = 5.39e-121
Identity = 174/229 (75.98%), Postives = 204/229 (89.08%), Query Frame = 0 

Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGREHK+++V+ IRQAVE+Y+SIYVF  ENMRNLKFKE RE++
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKEAIVNAIRQAVEDYSSIYVFKFENMRNLKFKEFREKM 60

Query: 61  K----LFFGANKVMQVSLGRTASEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           K     F G+NKVMQVSLGR+A++E++PG+YKVSKLL G+ GLCFTNL KEEVERLFNEY
Sbjct: 61  KSTSRFFLGSNKVMQVSLGRSAADEMRPGIYKVSKLLRGDAGLCFTNLAKEEVERLFNEY 120

Query: 121 VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG 180
            DYD+ RTGS ATEKVELKEGPL+QFSHEMEP LRK G+PVRLNKGVVELV+D+ VCEEG
Sbjct: 121 EDYDFGRTGSIATEKVELKEGPLDQFSHEMEPFLRKQGMPVRLNKGVVELVADYVVCEEG 180

Query: 181 KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 225
           K LSPE+A ILR LGI+MATFRL+L+CRWSP +FELYID P +SD+E++
Sbjct: 181 KPLSPEAARILRLLGIKMATFRLHLICRWSPSDFELYIDAPGDSDVESS 229

[Close]
BLAST of Cp4.1LG04g00300 vs. TAIR 10
Match: AT1G25260.1 (Ribosomal protein L10 family protein )

HSP 1 Score: 314.7 bits (805), Expect = 6.0e-86
Identity = 159/235 (67.66%), Postives = 192/235 (81.70%), Query Frame = 0 

Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGREHK+ +V+ IR+AVE Y+S+YVF+ ENMRN+KFKE R+Q 
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKECIVNGIREAVEKYSSVYVFSFENMRNIKFKEFRQQF 60

Query: 61  ----KLFFGANKVMQVSLGRTASEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
               K F G+NKVMQV+LGR+A +E++ G+YKVSKLL G+TGL  T++PKEEVE LFN Y
Sbjct: 61  RHNGKFFLGSNKVMQVALGRSAEDELRSGIYKVSKLLRGDTGLLVTDMPKEEVESLFNAY 120

Query: 121 VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG 180
            D D++RTGS A E VELKEGPLEQF+HEMEP LRKL +PVRLNKG VELV+DF VCEEG
Sbjct: 121 EDSDFSRTGSIAVETVELKEGPLEQFTHEMEPLLRKLEMPVRLNKGTVELVADFVVCEEG 180

Query: 181 KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDG------PDNSDIETA 226
           K LSP+SA ILR L ++MATF+LNL+CRWSP +FELY +        D SD+ET+
Sbjct: 181 KQLSPKSAHILRLLRMKMATFKLNLLCRWSPSDFELYREDLSELYREDLSDVETS 235

[Close]
BLAST of Cp4.1LG04g00300 vs. TAIR 10
Match: AT3G11250.1 (Ribosomal protein L10 family protein )

HSP 1 Score: 62.8 bits (151), Expect = 4.1e-10
Identity = 49/192 (25.52%), Postives = 89/192 (46.35%), Query Frame = 0 

Query: 17  KKGREHKKSMVDL-IRQAVENYNSIYVFTVENMRNLKFKELREQLK----LFFGANKVMQ 76
           K  +  KK   D  + Q ++ Y  I V   +N+ + + + +R+ L+    +  G N +M+
Sbjct: 3   KATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMK 62

Query: 77  VSLGRTASEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYDYARTGSEATEK 136
            S+   +       +  +  LL GN GL FT    +EV     +Y     AR G  A   
Sbjct: 63  RSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPID 122

Query: 137 VELKEGPLEQFSHEMEPS----LRKLGLPVRLNKGVVELVSDFTVCEEGKSLSPESAGIL 196
           V ++ G     +  ++PS     + L +P ++NKG VE+++   + ++G  +    A +L
Sbjct: 123 VVVQPG-----NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALL 182

Query: 197 RALGIRMATFRL 200
             LGIR  ++ L
Sbjct: 183 AKLGIRPFSYGL 189

[Close]
BLAST of Cp4.1LG04g00300 vs. TAIR 10
Match: AT3G09200.1 (Ribosomal protein L10 family protein )

HSP 1 Score: 62.4 bits (150), Expect = 5.4e-10
Identity = 49/192 (25.52%), Postives = 89/192 (46.35%), Query Frame = 0 

Query: 17  KKGREHKKSMVDL-IRQAVENYNSIYVFTVENMRNLKFKELREQLK----LFFGANKVMQ 76
           K  +  KK   D  + Q ++ Y  I V   +N+ + + + +R+ L+    +  G N +M+
Sbjct: 3   KATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMK 62

Query: 77  VSLGRTASEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYDYARTGSEATEK 136
            S+   +       +  +  LL GN GL FT    +EV     +Y     AR G  A   
Sbjct: 63  RSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPID 122

Query: 137 VELKEGPLEQFSHEMEPS----LRKLGLPVRLNKGVVELVSDFTVCEEGKSLSPESAGIL 196
           V ++ G     +  ++PS     + L +P ++NKG VE+++   + ++G  +    A +L
Sbjct: 123 VVVQPG-----NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALL 182

Query: 197 RALGIRMATFRL 200
             LGIR  ++ L
Sbjct: 183 AKLGIRPFSYGL 189

[Close]
BLAST of Cp4.1LG04g00300 vs. TAIR 10
Match: AT3G09200.2 (Ribosomal protein L10 family protein )

HSP 1 Score: 51.2 bits (121), Expect = 1.2e-06
Identity = 39/146 (26.71%), Postives = 67/146 (45.89%), Query Frame = 0 

Query: 58  EQLKLFFGANKVMQVSLGRTASEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYV 117
           E  ++   + ++   + G TA   + P       LL GN GL FT    +EV     +Y 
Sbjct: 23  EYTQILVRSVRIHSENTGNTAILNLLP-------LLQGNVGLIFTKGDLKEVSEEVAKYK 82

Query: 118 DYDYARTGSEATEKVELKEGPLEQFSHEMEPS----LRKLGLPVRLNKGVVELVSDFTVC 177
               AR G  A   V ++ G     +  ++PS     + L +P ++NKG VE+++   + 
Sbjct: 83  VGAPARVGLVAPIDVVVQPG-----NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI 142

Query: 178 EEGKSLSPESAGILRALGIRMATFRL 200
           ++G  +    A +L  LGIR  ++ L
Sbjct: 143 KQGDKVGSSEAALLAKLGIRPFSYGL 156

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g00300 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A4FV842.7e-5450.96mRNA turnover protein 4 homolog OS=Bos taurus OX=9913 GN=MRTO4 PE=2 SV=1[more]
Q9UKD25.0e-5350.00mRNA turnover protein 4 homolog OS=Homo sapiens OX=9606 GN=MRTO4 PE=1 SV=2[more]
Q9D0I88.6e-5350.48mRNA turnover protein 4 homolog OS=Mus musculus OX=10090 GN=Mrto4 PE=1 SV=1[more]
Q86HD31.9e-3939.07Ribosome assembly factor mrt4 OS=Dictyostelium discoideum OX=44689 GN=mrt4 PE=3 ... [more]
Q7S3022.3e-3435.62Ribosome assembly factor mrt4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-... [more]
BLAST of Cp4.1LG04g00300 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023529350.15.75e-15598.25mRNA turnover protein 4 homolog [Cucurbita pepo subsp. pepo][more]
XP_022933518.11.65e-15497.82mRNA turnover protein 4 homolog [Cucurbita moschata] >KAG6588508.1 mRNA turnover... [more]
XP_022969955.12.73e-15397.38mRNA turnover protein 4 homolog [Cucurbita maxima][more]
XP_038902849.12.41e-14793.01mRNA turnover protein 4 homolog [Benincasa hispida][more]
XP_022157470.11.34e-14490.83mRNA turnover protein 4 homolog [Momordica charantia][more]
BLAST of Cp4.1LG04g00300 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1F4Z27.98e-15597.82Ribosome assembly factor mrt4 OS=Cucurbita moschata OX=3662 GN=LOC111440919 PE=3... [more]
A0A6J1I1E21.32e-15397.38Ribosome assembly factor mrt4 OS=Cucurbita maxima OX=3661 GN=LOC111468997 PE=3 S... [more]
A0A6J1DT716.47e-14590.83Ribosome assembly factor mrt4 OS=Momordica charantia OX=3673 GN=LOC111024162 PE=... [more]
A0A6P5T8Z83.80e-12176.42Ribosome assembly factor mrt4 OS=Prunus avium OX=42229 GN=LOC110764858 PE=3 SV=1[more]
A0A6P4AGB25.39e-12175.98Ribosome assembly factor mrt4 OS=Ziziphus jujuba OX=326968 GN=LOC107427781 PE=3 ... [more]
BLAST of Cp4.1LG04g00300 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G25260.16.0e-8667.66Ribosomal protein L10 family protein [more]
AT3G11250.14.1e-1025.52Ribosomal protein L10 family protein [more]
AT3G09200.15.4e-1025.52Ribosomal protein L10 family protein [more]
AT3G09200.21.2e-0626.71Ribosomal protein L10 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001790Ribosomal protein L10PPFAMPF00466Ribosomal_L10coord: 19..116
e-value: 1.2E-15
score: 57.4
IPR04063760S ribosomal protein L10P, insertion domainPFAMPF17777RL10P_insertcoord: 122..192
e-value: 4.8E-23
score: 81.0
IPR043141Ribosomal protein L10-like domain superfamilyGENE3D3.30.70.1730coord: 30..206
e-value: 2.2E-67
score: 228.2
IPR043141Ribosomal protein L10-like domain superfamilySUPERFAMILY160369Ribosomal protein L10-likecoord: 20..138
IPR04316450S ribosomal protein L10, insertion domain superfamilyGENE3D3.90.105.20coord: 121..194
e-value: 2.2E-67
score: 228.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availablePANTHERPTHR45841MRNA TURNOVER PROTEIN 4 MRTO4coord: 1..224
NoneNo IPR availablePANTHERPTHR45841:SF4RIBOSOME ASSEMBLY FACTOR MRT4coord: 1..224
IPR033867Ribosome assembly factor Mrt4CDDcd05796Ribosomal_P0_likecoord: 21..180
e-value: 2.63671E-84
score: 245.565

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g00300.1Cp4.1LG04g00300.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000956 nuclear-transcribed mRNA catabolic process
biological_process GO:0000027 ribosomal large subunit assembly
biological_process GO:0006364 rRNA processing
cellular_component GO:0022626 cytosolic ribosome
cellular_component GO:0005730 nucleolus
cellular_component GO:0030687 preribosome, large subunit precursor