Cp4.1LG03g18130 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG03g18130
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG03: 12129503 .. 12133825 (-)
RNA-Seq ExpressionCp4.1LG03g18130
SyntenyCp4.1LG03g18130
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGGAAGAGGGTCAAGCGGCGATTTGCTGAGCATTCTCGATGCCATTTCGTCTTCAGATGTAATTTCCGTTTATCCATTGCATCTCACTTTGAAGTTTCTTTCTTCTGGTTTTCGGAAAATGATTTTGAGTCGAATTCTATTTTGTTAGCAATGTTTCGGGTGTGATCATGCTTCGATTGTTTGTTACTACTCGCAATCTGTGGTTGAATCCGCAAGGATTTATCGGTATCCATATTTGTTCTATAATATTTTCTTCATTTTCTGGACTAAGTCCTTCAGCATTTGCTCTCGTATGTTGTTGAATTTCTGCTATTAGATTTCGTGAACGGCAGATACTTCCTTCCAGTGACTGATTGATGTACAATTATATTTTACAGGCCGTCGAGAATCGTGTTCAGCTGCTCAATAAACTGGAGGATTTGAATTTATCAAGTAAATCAGGCTTGATTTCATTGGTCGAAAGCCTCACCGTATCCGCTCTGCGATTTCTTTTAATCTTTAATGTTTTTTTTTTCTTTGGCGATTCTCATTGTCGCGTGTTTTTACGGTATGTGAAGACGAGGCATTGGCATGGCATTTACCTTTCAGATTTGCACGTAATTAGCAGCTAATTAAATTTTGACGCAGTTTTTTAATCTGTTTATTCTTAATTTATTACTACTGAGTTCTGAAAAGTCGTTATATATTACTCTTATGAGTAAATGCTTGTATATCTTGACGGATAGCTTGATATTTTGGGAATGTAAGAGCATGGAGATCGTTTAAGGACCATCTAGCAGGAAAAGAAAGCTTCCTGAAGGAATCGGTAAGGGAATGGAATCGGTAAGGGAATGGAATTGCTAACTAATCGATTAAAGGTTATGCACCAGTGTCTCTCACTGTTGGAAGAAAGTCATGTCGATTCCTGAGAACTTCATAAAGAACTTTTGAATCACTTTTCTGGCCTTGAAGATGAAATATATCGGTTAAGCAGCCTGGGTGAGATTGACTAAGCCAGTCTCAATTCCAAAGGTACACTATTCTTATGGTATGGCTTACATGCGAATGAATGGAACTGTTCATAGGTTTTAGCATTCTTGTGAATAAATATATTCTTGTACTGCTAGGTCGCTTTTATCTTTGTGAAATAATAACCTCATTTTTCTTTCCTTTTAGTTCAAACATTGTCTTGGCTAAAGTATATGCCTTAGTTGGTTTAGCTATGCTTTGTTTGACACTCCTGCGCTTACTACAGATGGTTATTTTTATCTTTTTCAATGTGATGGGGGACATTCATAAGCATGGTCTTGTAATCGTGGCTTCAAATTAATGGAGTATGCTCTTTTCAAATTGTTATGCCTTTTTCTTCTTTCCGTTCCAGACGGGAAAACCCAGCACTATGCCCGTGGGTCGGTGATTTATGGTTCAGTCCCTGCCATCGTTCTGTTGCAGAAGGAACCGAATGCCAGTTTGCATAGTGGAACCACACTTGTCATTGGTCGTTACCTAATGAACCATATTGGTTCGTGCTCGGTGGTGAGGCCGAGAAGTAGTCTGCCTCACAGCCTTTCTTTAGTGCCAAGGTTAGAAAGGTTTTTTTTTACTTCTCATCTCAGTAATTTTCTCTCCAAAAACTGTTAGGTTTGTTTACCATTGATGTTGGTTACAAATCATCTCTCTTTTAAGATCACTCAAACTTCCAATGAGATCATTATTTATGTATTGAAACCATTGATGCATTTGGCTTTATGGTCCATTTCAGGTACTAAAGTTAATTAAAGACGAGTTGACTGTAGCGAAGTCTTAGAGAAAGTAGAAACAAATAATCTGATTTGTCGAACGTGATGCATTGCTAGTGAACAGAAATTGAGGCGTCAATATAGTATAATGGTAAGGCGACTGATATTGTTTCAATATGGGAGAATTAGAACCATCATTTTATACCCAAGTATAATTGGTCACATTCTAAGGACTGTTAGACACGATAGGACCGTGACAGACACCATTTTGTTCGTAGAGTGGATAAGGCACCATATCTTTTTTCTTTTCTTTTCTTTTTTTTTCTTTTTCCATTTTTTGTTCTGTAGGCTGAAGATTTGAGTTTATCTAGGAGTGTGCCACAAGTGGATTGATATAAATTATATCGTAATAGTTGATATTAATACATAGGATAGCGATAAGATGGGGGGAGTGAATTTGAGAGATCTAATTGGTGCTCCTATGAGGCTAAACCTTGTTTGGGTAAGGGTGTAGAGGTCAGTTTTACATATTGCCGAACTCTGAAAATGGTAAACGTAGCGTTCTATAAAAAATGATCGATAACTGTTTACTTAAGCACCACTGAACAGTCGGTATTTATTTATTTATTTATTTTTTAAAAAGTCTGGAGTAAAGTAGACTTGTGTAGTATGTATGATGAACAATGATCTAGACTTTGACATACACTTTGACCGCAGCTTTCCAACCTGAAAATGTCAGCGGAGCTCACGAAGATTATTTTTCGAAGGAGGTACTTTCAGTGGACCCTATAAGTACAGGTACTCTGAAATTCTTGGGTCATTATTTTCGAAGCAAGAGTATAGTTAATCGATAATCGTCTCGAGTATCTTGTAGTCCTTGGATCCAAGGGTAGCATTTGAGTAATATTCTTTCTCAGGGACCTTAGATAAAAGGAATAGTTGAAATTAGAATTTGGTAGATAATTAAGCTAATGTCTTTTTAGTTTTCTATTTTTAAAACTAAACTTGTTAACGAACATAACAAGTTTGTCTAGAATTTTCACTTTTGAAACACTTTGGAAAGAAAAGCACGTTTTTTTTGGAACGAGTATTAGTTTATTATTATTTTATATCTATGAATGTATGATTTAGCTCATGAATTTTGATTGATTAGATTTTTAAACCCCATTTCAATAAAAGATTACAGGATGATTAGAAAGAAAATAATTATCGAAGAGCTTCTAAACTATTATATTCAATTTTGTGAATTCAAAGTGTTTACATGAGCACTAAGATTTTCGGATGATTATAGTTTAGTATTTTTTTTTTTTATAGAAGTTTATAGTAATCGGAAAGTACTTTCTGAACTATTGGCGTTGGTGTTGCATAAAGCTCATTCACATCGCATATTTTGGTCCACGGTGTGATTATTAAAGTACACTGCCATTTTCTTCAGGGGGGCTAGCTTGAAAACACTGTCATTTAAGATTTTCATCATTTTCCTAAAGAAAGTTCTGAACAAAATCACGCGCCGCGTCGCTGCTAGTAGGTTTCCGTCTATATGTCTTTTCCAAATGTTCGATATATAGAAAACGTGTCAAATTAATGGAGGAGCATATAATCCTCTCTCGATTTGTTTACAAGAATATCTAGAAAAGATAAAATACGGTTCTGATATCTAAGTTTTTCACAACCATTTCATTTCATATTTAACACAGAATATGAATAGTGGAAGTGCATTTCACCGAACTAGTACATTCTCATCATAGAGAACGTAAATAGTCTAGAATTACCATTTTGAGAGCATATAAAGCTTGAACAAGACTGCCATCGTTTACACCAGAAATTTCCAATTTCCATTCTTAATGATCATGAAGATACTCATTAGTATTCTGATGCTCATTTTATTTCCATTCTTCACTGTTTTCATGTCATTGTTACCTCCAGAGCAACTGTATGGCATAGAATACGAAGTCCGTGTGATCAATGGCTTCACAAACAACTCCTCACTTCCTCTGGTGATATGGTGCGCGTCCAAAGACAGTGATATCGGCGGGCGTGCGCTCCAAGAGCATGATGATTTCAGTTGGCCCGTCAGGACCAACTTCTGGATTACTACAACCTCTCAATTCTCATGCACTGTCAAGCTTGACCGTACAAGGAAGAGTTTTGACGCATTCAAGGTACCAAGAGATATATATCGCTGTAGTGCCCTCAGGAAATGCTCTTGGTTGGTTTTGGAAGATGGGTTTTATTTCAGTGACGACGAAGTAAACTGGAAGAAGGATTTCTCGTGGTGAAGCACCAGACCAGCTAAGTTCACTCTACTCTGTTCTACTTCTCTACTAGTTTTACTTTTACTGTCATGATCTTGGCCTTTCCAAAGCTAGATTCTATAATGTAGTTCAGGAAAGGAAGGCTATTTTGCGTCATGAATATGAGTATAGCGAAGGAATTTGAATTCCCCGGTTATCTTAGGGCAGTATTTCCTAGTAAAGGTCACCTTTTTTTTTTTTTTTTTTTTTTTTTACCATGTACCTTTGAGGTTATTAATAATATATCAACGTTTGTTCAGTACTCCTGTGGCATATAATGGTCGGTAATAATTGCATTTCATGTTA

mRNA sequence

ATGGACGGAAGAGGGTCAAGCGGCGATTTGCTGAGCATTCTCGATGCCATTTCGTCTTCAGATGCCGTCGAGAATCGTGTTCAGCTGCTCAATAAACTGGAGGATTTGAATTTATCAAACGGGAAAACCCAGCACTATGCCCGTGGGTCGGTGATTTATGGTTCAGTCCCTGCCATCGTTCTGTTGCAGAAGGAACCGAATGCCAGTTTGCATAGTGGAACCACACTTGTCATTGGTCGTTACCTAATGAACCATATTGGTTCGTGCTCGGTGGTGAGGCCGAGAAGTAGTCTGCCTCACAGCCTTTCTTTAGTGCCAAGGTACTAAAGTTAATTAAAGACGAGTTGACTGTAGCGAAGTCTTAGAGAAAGTAGAAACAAATAATCTGATTTGTCGAACGTGATGCATTGCTAGTGAACAGAAATTGAGGCGTCAATATAGTATAATGCTTTCCAACCTGAAAATGTCAGCGGAGCTCACGAAGATTATTTTTCGAAGGAGGTACTTTCAGTGGACCCTATAAGTACAGAGCAACTGTATGGCATAGAATACGAAGTCCGTGTGATCAATGGCTTCACAAACAACTCCTCACTTCCTCTGGTGATATGGTGCGCGTCCAAAGACAGTGATATCGGCGGGCGTGCGCTCCAAGAGCATGATGATTTCAGTTGGCCCGTCAGGACCAACTTCTGGATTACTACAACCTCTCAATTCTCATGCACTGTCAAGCTTGACCGTACAAGGAAGAGTTTTGACGCATTCAAGGTACCAAGAGATATATATCGCTGTAGTGCCCTCAGGAAATGCTCTTGGTTGGTTTTGGAAGATGGGTTTTATTTCAGTGACGACGAAGTAAACTGGAAGAAGGATTTCTCGTGGTGAAGCACCAGACCAGCTAAGTTCACTCTACTCTGTTCTACTTCTCTACTAGTTTTACTTTTACTGTCATGATCTTGGCCTTTCCAAAGCTAGATTCTATAATGTAGTTCAGGAAAGGAAGGCTATTTTGCGTCATGAATATGAGTATAGCGAAGGAATTTGAATTCCCCGGTTATCTTAGGGCAGTATTTCCTAGTAAAGGTCACCTTTTTTTTTTTTTTTTTTTTTTTTTACCATGTACCTTTGAGGTTATTAATAATATATCAACGTTTGTTCAGTACTCCTGTGGCATATAATGGTCGGTAATAATTGCATTTCATGTTA

Coding sequence (CDS)

ATGGACGGAAGAGGGTCAAGCGGCGATTTGCTGAGCATTCTCGATGCCATTTCGTCTTCAGATGCCGTCGAGAATCGTGTTCAGCTGCTCAATAAACTGGAGGATTTGAATTTATCAAACGGGAAAACCCAGCACTATGCCCGTGGGTCGGTGATTTATGGTTCAGTCCCTGCCATCGTTCTGTTGCAGAAGGAACCGAATGCCAGTTTGCATAGTGGAACCACACTTGTCATTGGTCGTTACCTAATGAACCATATTGGTTCGTGCTCGGTGGTGAGGCCGAGAAGTAGTCTGCCTCACAGCCTTTCTTTAGTGCCAAGGTACTAA

Protein sequence

MDGRGSSGDLLSILDAISSSDAVENRVQLLNKLEDLNLSNGKTQHYARGSVIYGSVPAIVLLQKEPNASLHSGTTLVIGRYLMNHIGSCSVVRPRSSLPHSLSLVPRY
Homology
[Close]
BLAST of Cp4.1LG03g18130 vs. NCBI nr
Match: KAG6582443.1 (S-protein-like 24, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 100 bits (250), Expect = 7.48e-24
Identity = 62/106 (58.49%), Postives = 62/106 (58.49%), Query Frame = 0 

Query: 1   MDGRGSSGDLLSILDAISSSDAVENRVQLLNKLEDLNLSNGKTQHYARGSVIYGSVPAIV 60
           MDGRGSSGDLLSILDAISSSD                                       
Sbjct: 1   MDGRGSSGDLLSILDAISSSD--------------------------------------- 60

Query: 61  LLQKEPNASLHSGTTLVIGRYLMNHIGSCSVVRPRSSLPHSLSLVP 106
              KEPNASLHSGTTLVIGRYLMNHIGSCSVVR RSS PHSLSLVP
Sbjct: 61  ---KEPNASLHSGTTLVIGRYLMNHIGSCSVVRQRSSPPHSLSLVP 64

[Close]
BLAST of Cp4.1LG03g18130 vs. NCBI nr
Match: XP_038877575.1 (uncharacterized protein LOC120069810 isoform X4 [Benincasa hispida])

HSP 1 Score: 58.9 bits (141), Expect = 2.31e-07
Identity = 32/40 (80.00%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 1  MDGRGSSGDLLSILDAISSSDAVENRVQLLNKLEDLNLSN 40
          MDG  SSGDL SILDAISSSD VE+RVQLLNKLED  LS+
Sbjct: 1  MDGSRSSGDLQSILDAISSSDVVESRVQLLNKLEDFELSS 40

[Close]
BLAST of Cp4.1LG03g18130 vs. NCBI nr
Match: XP_038877564.1 (uncharacterized protein LOC120069810 isoform X2 [Benincasa hispida])

HSP 1 Score: 58.9 bits (141), Expect = 2.33e-07
Identity = 32/40 (80.00%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 1  MDGRGSSGDLLSILDAISSSDAVENRVQLLNKLEDLNLSN 40
          MDG  SSGDL SILDAISSSD VE+RVQLLNKLED  LS+
Sbjct: 1  MDGSRSSGDLQSILDAISSSDVVESRVQLLNKLEDFELSS 40

[Close]
BLAST of Cp4.1LG03g18130 vs. NCBI nr
Match: XP_038877557.1 (uncharacterized protein LOC120069810 isoform X1 [Benincasa hispida])

HSP 1 Score: 58.9 bits (141), Expect = 2.33e-07
Identity = 32/40 (80.00%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 1  MDGRGSSGDLLSILDAISSSDAVENRVQLLNKLEDLNLSN 40
          MDG  SSGDL SILDAISSSD VE+RVQLLNKLED  LS+
Sbjct: 1  MDGSRSSGDLQSILDAISSSDVVESRVQLLNKLEDFELSS 40

[Close]
BLAST of Cp4.1LG03g18130 vs. NCBI nr
Match: XP_031738820.1 (uncharacterized protein LOC101206663 isoform X3 [Cucumis sativus])

HSP 1 Score: 58.5 bits (140), Expect = 3.15e-07
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 0 

Query: 1  MDGRGSSGDLLSILDAISSSDAVENRVQLLNKLEDLNLSN 40
          MDG  SSGDL SILDAISSSD VE+RVQLL KLEDL+LS+
Sbjct: 1  MDGSRSSGDLQSILDAISSSDVVESRVQLLKKLEDLDLSS 40

[Close]
BLAST of Cp4.1LG03g18130 vs. ExPASy TrEMBL
Match: A0A0A0L820 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G133230 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.68e-08
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 0 

Query: 1  MDGRGSSGDLLSILDAISSSDAVENRVQLLNKLEDLNLSN 40
          MDG  SSGDL SILDAISSSD VE+RVQLL KLEDL+LS+
Sbjct: 1  MDGSRSSGDLQSILDAISSSDVVESRVQLLKKLEDLDLSS 40

[Close]
BLAST of Cp4.1LG03g18130 vs. ExPASy TrEMBL
Match: A0A6J1CZS0 (uncharacterized protein LOC111016053 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111016053 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.86e-07
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 0 

Query: 1  MDGRGSSGDLLSILDAISSSDAVENRVQLLNKLEDLNLSN 40
          M+GR SSGDL SILDAISSSD VE+R+QLL KLEDL+LS+
Sbjct: 1  MEGRRSSGDLQSILDAISSSDVVESRIQLLIKLEDLDLSS 40

[Close]
BLAST of Cp4.1LG03g18130 vs. ExPASy TrEMBL
Match: A0A6J1CYX4 (uncharacterized protein LOC111016053 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111016053 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.86e-07
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 0 

Query: 1  MDGRGSSGDLLSILDAISSSDAVENRVQLLNKLEDLNLSN 40
          M+GR SSGDL SILDAISSSD VE+R+QLL KLEDL+LS+
Sbjct: 1  MEGRRSSGDLQSILDAISSSDVVESRIQLLIKLEDLDLSS 40

[Close]
BLAST of Cp4.1LG03g18130 vs. ExPASy TrEMBL
Match: A0A1S4DT76 (uncharacterized protein LOC103483511 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483511 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.35e-06
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 1  MDGRGSSGDLLSILDAISSSDAVENRVQLLNKLEDLNLSN 40
          MDG  SS DL SILDAISSSD VE+R+QLL KLEDL+LS+
Sbjct: 1  MDGSRSSADLQSILDAISSSDVVESRIQLLKKLEDLDLSS 40

[Close]
BLAST of Cp4.1LG03g18130 vs. ExPASy TrEMBL
Match: A0A1S3AWX7 (uncharacterized protein LOC103483511 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483511 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.36e-06
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 1  MDGRGSSGDLLSILDAISSSDAVENRVQLLNKLEDLNLSN 40
          MDG  SS DL SILDAISSSD VE+R+QLL KLEDL+LS+
Sbjct: 1  MDGSRSSADLQSILDAISSSDVVESRIQLLKKLEDLDLSS 40

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g18130 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g18130 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6582443.17.48e-2458.49S-protein-like 24, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_038877575.12.31e-0780.00uncharacterized protein LOC120069810 isoform X4 [Benincasa hispida][more]
XP_038877564.12.33e-0780.00uncharacterized protein LOC120069810 isoform X2 [Benincasa hispida][more]
XP_038877557.12.33e-0780.00uncharacterized protein LOC120069810 isoform X1 [Benincasa hispida][more]
XP_031738820.13.15e-0780.00uncharacterized protein LOC101206663 isoform X3 [Cucumis sativus][more]
BLAST of Cp4.1LG03g18130 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8202.68e-0880.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G133230 PE=4 SV=1[more]
A0A6J1CZS02.86e-0777.50uncharacterized protein LOC111016053 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J1CYX42.86e-0777.50uncharacterized protein LOC111016053 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A1S4DT761.35e-0675.00uncharacterized protein LOC103483511 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S3AWX71.36e-0675.00uncharacterized protein LOC103483511 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
BLAST of Cp4.1LG03g18130 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g18130.1Cp4.1LG03g18130.1mRNA