Cp4.1LG03g12470 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG03g12470
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionBifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
LocationCp4.1LG03: 10276093 .. 10276386 (-)
RNA-Seq ExpressionCp4.1LG03g12470
SyntenyCp4.1LG03g12470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGCTGTGGCTGTGGCTTTGGCATTGGTTTTGATAGCTATGATTGGTTTGGGTGAAGCTCAAACCGTATGCAACATGTCATTTCCTGATATATTTTCATGTAGTTCGTCGATGATGCCTCCGAACCCGACACCGCCTACCGCCCAGTGCTGCACGGCGCTCTCGCACGCCGACTTGAAATGCTTATGCGACTACCTAAAAGCTGGAGCCTTTTCTTATCTTGGCATTGACCCTAGTCTTGCCTTGCAGCTCCCTAACAAGTGCAACATTCCTAACCCACCAACTTGTTAG

mRNA sequence

ATGAAGGCTGTGGCTGTGGCTTTGGCATTGGTTTTGATAGCTATGATTGGTTTGGGTGAAGCTCAAACCGTATGCAACATGTCATTTCCTGATATATTTTCATGTAGTTCGTCGATGATGCCTCCGAACCCGACACCGCCTACCGCCCAGTGCTGCACGGCGCTCTCGCACGCCGACTTGAAATGCTTATGCGACTACCTAAAAGCTGGAGCCTTTTCTTATCTTGGCATTGACCCTAGTCTTGCCTTGCAGCTCCCTAACAAGTGCAACATTCCTAACCCACCAACTTGTTAG

Coding sequence (CDS)

ATGAAGGCTGTGGCTGTGGCTTTGGCATTGGTTTTGATAGCTATGATTGGTTTGGGTGAAGCTCAAACCGTATGCAACATGTCATTTCCTGATATATTTTCATGTAGTTCGTCGATGATGCCTCCGAACCCGACACCGCCTACCGCCCAGTGCTGCACGGCGCTCTCGCACGCCGACTTGAAATGCTTATGCGACTACCTAAAAGCTGGAGCCTTTTCTTATCTTGGCATTGACCCTAGTCTTGCCTTGCAGCTCCCTAACAAGTGCAACATTCCTAACCCACCAACTTGTTAG

Protein sequence

MKAVAVALALVLIAMIGLGEAQTVCNMSFPDIFSCSSSMMPPNPTPPTAQCCTALSHADLKCLCDYLKAGAFSYLGIDPSLALQLPNKCNIPNPPTC
Homology
BLAST of Cp4.1LG03g12470 vs. ExPASy Swiss-Prot
Match: Q8W453 (Putative lipid-transfer protein DIR1 OS=Arabidopsis thaliana OX=3702 GN=DIR1 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.2e-13
Identity = 35/94 (37.23%), Postives = 52/94 (55.32%), Query Frame = 0

Query: 4   VAVALALVLIAMIGLGEAQTVCNMSFPDIFSCSSSMMPPNPTPPTAQCCTALSHADLKCL 63
           V +A+ +++  ++    A  +C MS  ++  C  ++   NPT P+  CCTAL HAD  CL
Sbjct: 9   VMMAMIVIMAMLVDTSVAIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACL 68

Query: 64  CDYLKAGAFSYLGIDPSLALQLPNKCNIPNPPTC 98
           C Y  +      G+DP LA  LP +C + N PTC
Sbjct: 69  CGYKNSPWLGSFGVDPELASALPKQCGLANAPTC 102

BLAST of Cp4.1LG03g12470 vs. NCBI nr
Match: KAG6582086.1 (putative lipid-transfer protein DIR1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 176 bits (447), Expect = 2.34e-55
Identity = 86/97 (88.66%), Postives = 90/97 (92.78%), Query Frame = 0

Query: 1  MKAVAVALALVLIAMIGLGEAQTVCNMSFPDIFSCSSSMMPPNPTPPTAQCCTALSHADL 60
          MKAV  ALALVLIAMIGLGEAQT+CNMSFPDIFSCSSS+MPPNPTPPT QCCTAL HADL
Sbjct: 1  MKAVVGALALVLIAMIGLGEAQTICNMSFPDIFSCSSSVMPPNPTPPTTQCCTALLHADL 60

Query: 61 KCLCDYLKAGAFSYLGIDPSLALQLPNKCNIPNPPTC 97
           CLC+Y K GAFSYLGIDP+LALQLPNKCNIPNPPTC
Sbjct: 61 TCLCNYQKTGAFSYLGIDPNLALQLPNKCNIPNPPTC 97

BLAST of Cp4.1LG03g12470 vs. NCBI nr
Match: KAG7018501.1 (putative lipid-transfer protein DIR1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 152 bits (385), Expect = 9.16e-45
Identity = 76/87 (87.36%), Postives = 80/87 (91.95%), Query Frame = 0

Query: 1  MKAVAVALALVLIAMIGLGEAQTVCNMSFPDIFSCSSSMMPPNPTPPTAQCCTALSHADL 60
          MKAV  ALALVLIAMIGLGEAQT+CNMSFPDIFSCSSS+MPPNPTPPT QCCTAL HADL
Sbjct: 1  MKAVVGALALVLIAMIGLGEAQTICNMSFPDIFSCSSSVMPPNPTPPTTQCCTALLHADL 60

Query: 61 KCLCDYLKAGAFSYLGIDPSLALQLPN 87
           CLC+Y K GAFSYLGIDP+LALQLPN
Sbjct: 61 TCLCNYQKTGAFSYLGIDPNLALQLPN 87

BLAST of Cp4.1LG03g12470 vs. NCBI nr
Match: XP_038898435.1 (putative lipid-transfer protein DIR1 [Benincasa hispida])

HSP 1 Score: 126 bits (316), Expect = 2.34e-35
Identity = 58/92 (63.04%), Postives = 72/92 (78.26%), Query Frame = 0

Query: 6  VALALVLIAMIGLGEAQTVCNMSFPDIFSCSSSMMPPNPTPPTAQCCTALSHADLKCLCD 65
          VALALVL+ +IG GEAQT+CNM++  +++C  S+ PPNPTPPTA+CC ALSHADL C C 
Sbjct: 8  VALALVLMVVIGFGEAQTICNMTYAGLYACRPSVTPPNPTPPTARCCMALSHADLHCFCA 67

Query: 66 YLKAGAFSYLGIDPSLALQLPNKCNIPNPPTC 97
          Y  +GA S LGIDP+LA+QLP  C +PN P C
Sbjct: 68 YRNSGALSSLGIDPNLAMQLPKICKLPNSPNC 99

BLAST of Cp4.1LG03g12470 vs. NCBI nr
Match: XP_022979997.1 (putative lipid-transfer protein DIR1 [Cucurbita maxima])

HSP 1 Score: 124 bits (312), Expect = 9.53e-35
Identity = 57/93 (61.29%), Postives = 71/93 (76.34%), Query Frame = 0

Query: 5  AVALALVLIAMIGLGEAQTVCNMSFPDIFSCSSSMMPPNPTPPTAQCCTALSHADLKCLC 64
          AVALALVL+ ++GLGEAQT+CNM    +++C  ++ PPNPTPP AQCC ALS ADL C C
Sbjct: 7  AVALALVLMTVMGLGEAQTICNMPVAGLYACRPAVTPPNPTPPNAQCCMALSQADLHCFC 66

Query: 65 DYLKAGAFSYLGIDPSLALQLPNKCNIPNPPTC 97
           Y  +GA   LG+DP+LA+QLP KCN+PN P C
Sbjct: 67 SYRNSGALPSLGVDPNLAMQLPKKCNLPNSPNC 99

BLAST of Cp4.1LG03g12470 vs. NCBI nr
Match: XP_022955375.1 (putative lipid-transfer protein DIR1 [Cucurbita moschata] >XP_023526472.1 putative lipid-transfer protein DIR1 [Cucurbita pepo subsp. pepo] >KAG6582085.1 putative lipid-transfer protein DIR1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 124 bits (311), Expect = 1.35e-34
Identity = 57/93 (61.29%), Postives = 72/93 (77.42%), Query Frame = 0

Query: 5  AVALALVLIAMIGLGEAQTVCNMSFPDIFSCSSSMMPPNPTPPTAQCCTALSHADLKCLC 64
          AVALALVL+A++GLGEAQT+CNM    +++C  ++ PPNPTPP AQCC ALS A+L C C
Sbjct: 7  AVALALVLMAVMGLGEAQTICNMPVAGLYACRPAVTPPNPTPPNAQCCMALSQANLHCFC 66

Query: 65 DYLKAGAFSYLGIDPSLALQLPNKCNIPNPPTC 97
           Y  +GA   LG+DP+LA+QLP KCN+PN P C
Sbjct: 67 SYRNSGALPSLGVDPNLAMQLPKKCNLPNSPNC 99

BLAST of Cp4.1LG03g12470 vs. ExPASy TrEMBL
Match: A0A6J1IQ87 (putative lipid-transfer protein DIR1 OS=Cucurbita maxima OX=3661 GN=LOC111479523 PE=4 SV=1)

HSP 1 Score: 124 bits (312), Expect = 4.61e-35
Identity = 57/93 (61.29%), Postives = 71/93 (76.34%), Query Frame = 0

Query: 5  AVALALVLIAMIGLGEAQTVCNMSFPDIFSCSSSMMPPNPTPPTAQCCTALSHADLKCLC 64
          AVALALVL+ ++GLGEAQT+CNM    +++C  ++ PPNPTPP AQCC ALS ADL C C
Sbjct: 7  AVALALVLMTVMGLGEAQTICNMPVAGLYACRPAVTPPNPTPPNAQCCMALSQADLHCFC 66

Query: 65 DYLKAGAFSYLGIDPSLALQLPNKCNIPNPPTC 97
           Y  +GA   LG+DP+LA+QLP KCN+PN P C
Sbjct: 67 SYRNSGALPSLGVDPNLAMQLPKKCNLPNSPNC 99

BLAST of Cp4.1LG03g12470 vs. ExPASy TrEMBL
Match: A0A6J1GUZ3 (putative lipid-transfer protein DIR1 OS=Cucurbita moschata OX=3662 GN=LOC111457423 PE=4 SV=1)

HSP 1 Score: 124 bits (311), Expect = 6.55e-35
Identity = 57/93 (61.29%), Postives = 72/93 (77.42%), Query Frame = 0

Query: 5  AVALALVLIAMIGLGEAQTVCNMSFPDIFSCSSSMMPPNPTPPTAQCCTALSHADLKCLC 64
          AVALALVL+A++GLGEAQT+CNM    +++C  ++ PPNPTPP AQCC ALS A+L C C
Sbjct: 7  AVALALVLMAVMGLGEAQTICNMPVAGLYACRPAVTPPNPTPPNAQCCMALSQANLHCFC 66

Query: 65 DYLKAGAFSYLGIDPSLALQLPNKCNIPNPPTC 97
           Y  +GA   LG+DP+LA+QLP KCN+PN P C
Sbjct: 67 SYRNSGALPSLGVDPNLAMQLPKKCNLPNSPNC 99

BLAST of Cp4.1LG03g12470 vs. ExPASy TrEMBL
Match: A0A6J1CC99 (putative lipid-transfer protein DIR1 OS=Momordica charantia OX=3673 GN=LOC111009409 PE=4 SV=1)

HSP 1 Score: 124 bits (310), Expect = 9.30e-35
Identity = 58/92 (63.04%), Postives = 70/92 (76.09%), Query Frame = 0

Query: 6  VALALVLIAMIGLGEAQTVCNMSFPDIFSCSSSMMPPNPTPPTAQCCTALSHADLKCLCD 65
          VA+ALVLI  +G GEAQT+CNMS   +++C  S+ PPNPTPP+A CCTALSHADL C C 
Sbjct: 8  VAMALVLIVALGWGEAQTLCNMSIVGLYACRPSVTPPNPTPPSANCCTALSHADLHCFCA 67

Query: 66 YLKAGAFSYLGIDPSLALQLPNKCNIPNPPTC 97
          Y  +GA   LGIDP+LAL+LP KC +PN P C
Sbjct: 68 YRNSGALPSLGIDPNLALKLPEKCKLPNSPNC 99

BLAST of Cp4.1LG03g12470 vs. ExPASy TrEMBL
Match: A0A0A0KZ41 (AAI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G017140 PE=4 SV=1)

HSP 1 Score: 116 bits (291), Expect = 7.72e-32
Identity = 53/97 (54.64%), Postives = 70/97 (72.16%), Query Frame = 0

Query: 1   MKAVAVALALVLIAMIGLGEAQTVCNMSFPDIFSCSSSMMPPNPTPPTAQCCTALSHADL 60
           MK VA+AL L+++  IG GEAQ++CNM    +++C  S+ PPNPTPPT QCC+AL+HADL
Sbjct: 5   MKVVALALVLMVVNNIGFGEAQSICNMPIAGLYACRPSVTPPNPTPPTTQCCSALTHADL 64

Query: 61  KCLCDYLKAGAFSYLGIDPSLALQLPNKCNIPNPPTC 97
            C C Y  +GA S  GI+P LA++LP +CNI   P C
Sbjct: 65  HCFCAYRNSGALSSFGINPELAMELPKRCNISKSPNC 101

BLAST of Cp4.1LG03g12470 vs. ExPASy TrEMBL
Match: A0A0A1IXE5 (Lipid binding/ Lipid transporter protein OS=Cucumis sativus OX=3659 GN=LBP PE=2 SV=1)

HSP 1 Score: 115 bits (287), Expect = 3.14e-31
Identity = 52/97 (53.61%), Postives = 70/97 (72.16%), Query Frame = 0

Query: 1   MKAVAVALALVLIAMIGLGEAQTVCNMSFPDIFSCSSSMMPPNPTPPTAQCCTALSHADL 60
           MK VA+AL L+++  IG G+AQ++CNM    +++C  S+ PPNPTPPT QCC+AL+HADL
Sbjct: 5   MKVVALALVLMVVNNIGFGKAQSICNMPIAGLYACRPSVTPPNPTPPTTQCCSALTHADL 64

Query: 61  KCLCDYLKAGAFSYLGIDPSLALQLPNKCNIPNPPTC 97
            C C Y  +GA S  GI+P LA++LP +CNI   P C
Sbjct: 65  HCFCAYRNSGALSSFGINPELAMELPKRCNISKSPNC 101

BLAST of Cp4.1LG03g12470 vs. TAIR 10
Match: AT5G48485.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 76.3 bits (186), Expect = 1.6e-14
Identity = 35/94 (37.23%), Postives = 52/94 (55.32%), Query Frame = 0

Query: 4   VAVALALVLIAMIGLGEAQTVCNMSFPDIFSCSSSMMPPNPTPPTAQCCTALSHADLKCL 63
           V +A+ +++  ++    A  +C MS  ++  C  ++   NPT P+  CCTAL HAD  CL
Sbjct: 9   VMMAMIVIMAMLVDTSVAIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACL 68

Query: 64  CDYLKAGAFSYLGIDPSLALQLPNKCNIPNPPTC 98
           C Y  +      G+DP LA  LP +C + N PTC
Sbjct: 69  CGYKNSPWLGSFGVDPELASALPKQCGLANAPTC 102

BLAST of Cp4.1LG03g12470 vs. TAIR 10
Match: AT5G55460.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 50.1 bits (118), Expect = 1.2e-06
Identity = 31/94 (32.98%), Postives = 49/94 (52.13%), Query Frame = 0

Query: 7   ALALVLIAMIGLGE--AQTVCNMSFPDIFSCSSSMMPPNPTPPTAQCCTALSHADLKCLC 66
           ALA+VL A++ + E  + T CN++   +  C  +++  NP  P  +CC  L  A+LKC+C
Sbjct: 13  ALAIVLAALVLMEEPTSITACNINANHLEKCRPAVIGDNPPSPIKECCELLQAANLKCIC 72

Query: 67  DYLKAGAFSYLGIDPSLALQLPNKCNIPN-PPTC 98
            +        L + PS    L +KC +   PP C
Sbjct: 73  RF--KSVLPVLAVYPSKVQALLSKCGLTTIPPAC 104

BLAST of Cp4.1LG03g12470 vs. TAIR 10
Match: AT3G52130.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 48.9 bits (115), Expect = 2.7e-06
Identity = 26/64 (40.62%), Postives = 36/64 (56.25%), Query Frame = 0

Query: 32  IFSCSSSMMPPNPTPPTAQCCTALSHADLKCLCDYLKAGAFSYLGIDPSLALQLPNKCNI 91
           +  C +++ P +P PPT  CC+A+      CLC  L A      GID S+ALQLP +C+ 
Sbjct: 59  LIPCRAAVAPFSPIPPTEICCSAVVTLGRPCLC--LLANGPPLSGIDRSMALQLPQRCSA 118

Query: 92  PNPP 96
             PP
Sbjct: 119 NFPP 120

BLAST of Cp4.1LG03g12470 vs. TAIR 10
Match: AT3G53980.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 40.4 bits (93), Expect = 9.5e-04
Identity = 32/104 (30.77%), Postives = 47/104 (45.19%), Query Frame = 0

Query: 1   MKAVAVALALVLIAMI--GLGEAQTVCNMSFPD-----IFSCSSSMMPPNPTPPTAQCCT 60
           MK + +   ++LI  +  G GE    C  S PD     +  C+ +    N   P   CCT
Sbjct: 5   MKFLCILGLILLIGTVVDGAGE----CGRSSPDNEAMKLAPCAGAAQDANSAVP-GGCCT 64

Query: 61  ALSH--ADLKCLCDYLKAGAFSYLGIDPSLALQLPNKCNIPNPP 96
            +     + KCLC  L +      G+DP +AL +P +CN  N P
Sbjct: 65  QIKRFSQNPKCLCAILLSDTAKASGVDPEVALTIPKRCNFANRP 103

BLAST of Cp4.1LG03g12470 vs. TAIR 10
Match: AT3G53980.2 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 40.4 bits (93), Expect = 9.5e-04
Identity = 32/104 (30.77%), Postives = 47/104 (45.19%), Query Frame = 0

Query: 1   MKAVAVALALVLIAMI--GLGEAQTVCNMSFPD-----IFSCSSSMMPPNPTPPTAQCCT 60
           MK + +   ++LI  +  G GE    C  S PD     +  C+ +    N   P   CCT
Sbjct: 5   MKFLCILGLILLIGTVVDGAGE----CGRSSPDNEAMKLAPCAGAAQDANSAVP-GGCCT 64

Query: 61  ALSH--ADLKCLCDYLKAGAFSYLGIDPSLALQLPNKCNIPNPP 96
            +     + KCLC  L +      G+DP +AL +P +CN  N P
Sbjct: 65  QIKRFSQNPKCLCAILLSDTAKASGVDPEVALTIPKRCNFANRP 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q8W4532.2e-1337.23Putative lipid-transfer protein DIR1 OS=Arabidopsis thaliana OX=3702 GN=DIR1 PE=... [more]
Match NameE-valueIdentityDescription
KAG6582086.12.34e-5588.66putative lipid-transfer protein DIR1, partial [Cucurbita argyrosperma subsp. sor... [more]
KAG7018501.19.16e-4587.36putative lipid-transfer protein DIR1, partial [Cucurbita argyrosperma subsp. arg... [more]
XP_038898435.12.34e-3563.04putative lipid-transfer protein DIR1 [Benincasa hispida][more]
XP_022979997.19.53e-3561.29putative lipid-transfer protein DIR1 [Cucurbita maxima][more]
XP_022955375.11.35e-3461.29putative lipid-transfer protein DIR1 [Cucurbita moschata] >XP_023526472.1 putati... [more]
Match NameE-valueIdentityDescription
A0A6J1IQ874.61e-3561.29putative lipid-transfer protein DIR1 OS=Cucurbita maxima OX=3661 GN=LOC111479523... [more]
A0A6J1GUZ36.55e-3561.29putative lipid-transfer protein DIR1 OS=Cucurbita moschata OX=3662 GN=LOC1114574... [more]
A0A6J1CC999.30e-3563.04putative lipid-transfer protein DIR1 OS=Momordica charantia OX=3673 GN=LOC111009... [more]
A0A0A0KZ417.72e-3254.64AAI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G017140 PE=4 SV... [more]
A0A0A1IXE53.14e-3153.61Lipid binding/ Lipid transporter protein OS=Cucumis sativus OX=3659 GN=LBP PE=2 ... [more]
Match NameE-valueIdentityDescription
AT5G48485.11.6e-1437.23Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil... [more]
AT5G55460.11.2e-0632.98Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil... [more]
AT3G52130.12.7e-0640.63Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil... [more]
AT3G53980.19.5e-0430.77Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil... [more]
AT3G53980.29.5e-0430.77Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainSMARTSM00499aai_6coord: 25..97
e-value: 2.9E-7
score: 40.1
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainPFAMPF14368LTP_2coord: 16..97
e-value: 1.6E-12
score: 47.4
IPR036312Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamilyGENE3D1.10.110.10coord: 21..97
e-value: 5.9E-20
score: 72.9
IPR036312Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamilySUPERFAMILY47699Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumincoord: 25..96
NoneNo IPR availablePANTHERPTHR33122:SF63BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEINcoord: 3..97
IPR039265Putative lipid-transfer protein DIR1-likePANTHERPTHR33122LIPID BINDING PROTEIN-RELATEDcoord: 3..97

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g12470.1Cp4.1LG03g12470.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009627 systemic acquired resistance
molecular_function GO:0005504 fatty acid binding