Cp4.1LG03g12000 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG03g12000
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	signal recognition particle 19 kDa protein
Location	Cp4.1LG03: 10590729 .. 10593777 (+)
RNA-Seq Expression	Cp4.1LG03g12000
Synteny	Cp4.1LG03g12000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGTGGTGAAAAAAAAAATCCCTTCTGTCTTCGGCGTCGCCCCATTTTCCGATTCTCTCTTTTTTCCTGTTTCGCTCAATCTCACCCATTGTCGCGGTTCGGCTGGAACAGAAAATCAGATCTCCTTTTAGCTTCTCAATTTGGTAATCGTATTTAGTTGATTCTTGGTTTAGTGGATTTGTAACTTGTTTCATACGATCTTGTGTTTTAGGATGTTTACATCTTCTTTGGGATTGTTTCTCTCTTCTTCTACTGAAGCTCATTGGCAGTAATTGGCATAGCATATGAGGAATTTATTCACTTTTTTGTCATTTTGATTGCAATGATCAGATAAATGAGCTTTATCCAGCTAGGAATTTGTTAAGTAGTTGAAATCCTGTTCAATTAGGTGCTTTCTGATTACTAGAATGTTATACTTCTTTAGCAGTATGAATCTTCAATCGGTGGATCAGACAAAGAAAATCTGGTCAAATTTAATCAAATATTAGGAACTTAAAGTCAAATTCAAACTTCACTTCATTTTCTTTCGGCAAATTTTAGAATATCCTTGTTTGGAACTAGAATTTATTGAATGAAATGGATTATTGATAAATTTACTTGAAGTGTTGATTTTCTTTCATCATGCTTTGCAATGTATTTGCAAATGTGGGGGAATTAGACGGTTTGTTTATTTCAACTTTGTCTTGACTTTGTCTCAACGTTGCATTTTCTCGATATTTTTCCCCCTTTATTTTCCATAGATGTGCTGTTTGAACATGTTTATGTATAGCATATTGAAAAGCATTAACAAAAATTTGTTGTTATTATTGGATAGTGTGGTGTTAAATTTTCAATTTTATTGTTTGAGGTGGTGGTTATATTAATGGCCTAAAATTGTAGAACATTAAGGTGTCCCAGCTTTCCTTTCTATAAATTGTTGGAAATTTCACTCAAGTTTTCAATTCATAATGTCCCAATTTGAGACTGTATGAAGAATATATTTCTGTCAGATAACCAAAAACTGAATTGAGTTGAACAGTTTCTTGTCGAGGGAACATTCGTACTAATGTCTGAAGAATATATTTTGTTTTGCCCTATACTGATTGAATATGCATTATGATAGAAATTTTTTATGTGCTATTATAGGAATTTGGTTGGAACATGGATGGAGAAATCCCCAACATAAAGAGATGGGTAGTTTTGTATCCCGTCTATATTAATTCAAAGAAGACAATAGCTGAAGGAAGACGTATCGGTGTTAGCAAAGCATGTGAGAATCCAACGTGTGCTGAGATTGGTGATTGCTGCAGTCATCTCAAACTGCCCTTTGCTATTGAGGTTTTCTGGCAATGATCTGTCATTGATTAAATCTTCCCTTCCTATTAATTTTTGTTCTCCCTGCTGTTTGTTTGGATTGAAGTTAGCTGCATCCTGCGTCGAGTTTATATGAGACTATGATCATTGATAGAATACGTTAATTCATGTTCTGAGCATTCCTGCAGATTGATAAAGCTTATCCTCGTGATTTCATGCAACGAGGGAGAGTGCGGGTTCTGCTGAAGAAGGAGGATGGAACTCTGTCAAATCCAGCTATTCCTTCCAGTAAGACTTATACTTGTCTCTTTGGACCCGTTTTATCCCTTGGGAAAAAAAAAATAGCTGTCTGTTTCCGATTAATATTGAAATAGTTATCTGTTTTTCATTAACAAAGTTATAATAAGCTATGAATCAAAGATATACTTATTAACTAAAGAAAAATACTGCTTCTAAATAATTTCTTTCGACATTCTACACGTTTATGAAAATGAGAACTTGCCCTCCAGTTTGATTGAAACACCTATGTCTTGTAGGAAGCATAGAATCAATTTGAGAATTCTGTTTGAAGCTCATTTCAAATCGAAAGTGGTAACAAAGCAGTGCTATTAGGTCTTGAACTTTAATAGATTGTTAAACTTTCTATTTTGTATCCAGTAGGTTTCTAAACTTTCAGTCTCGTTTCTATTTTGTATCCAGTAGGTTTCTAAACTTTCAATCTCGTGTACAATAGGTCCTTAATTTTTTTATTTTATGTCAAATAGGTTCCCTAAATTTTTAATGTTAATGACTTATTATACATTTTCTAAAATCTATCATACAAAAGTTCAAAATTTAGGGTCATATTCAAAACGAAACTTAATTTTATATCATATAGATCTATTAATTTATTCCTATTAGATGCAAGATTGAAATTCATGAATCTATTAAACATGAAATTATTAGACACATTTTAGGGTTTAGAAACTTGGGAGAAAACCCATAATTTAACCTAAAAGTATCTTATTCCCCTTTTGAGTTCTTATTGTCAATGGGAATACCCTAATGATTACAACTTTACATATGAGGTATGTGGCTATATTGCAGGAAAACAAATGATGCTTCGTATAGCCGAACTTGTTCCTAGACATCCTGGAAGGATAAAGAAGCAGGAGCCTGCATCATCATCAACTGCAGGACCTTCAAAAGGCAAGGGTGGAAGAAAGAAGAAATAATTACATTATGTAATTGCAAGAACCAGATTGTTAGCAACCAGGCAAGCAGTTTCATATTTAGGTCTTATTTCTTAATTCTTATCAACCTTTGAGTATTGGCGCTCTGCCCCTGCCCCCATCCGAAACGAAAACTACACAGTGGGTTTGTTTTGAACAATTTTGTAAAATAGTGGATCATGGAGTTTTACTGAGATGAATTTGCTGATAGGAGAAACGGATTATGGATGAGAATTAAGTTGAATGATCCACTCTTTTGCTTAAATCTTTCGAGATTGCCCGTCTTTGAATATGATCCAGGTTTCGAGATTGAAAAATGTGGAAATTTCTCAATATTTTTCCAGGGTCGGAATCTGGAAATATGAAAATATTGAGATCTTAGCTTATAATCTTGATCACAAACAGACTTGAAACTCTTTCCAGGTTTTGTGAAGATCAAGTTGTTTGTCATCTTCAGATTATTCAACATGAATTGGAGCTGTTCTTAGTGCACAGATACCTTCTTTTATACATATTGAATTTCTGGTGGTGGGTTATTTTGTGCC

mRNA sequence

CGGTGGTGAAAAAAAAAATCCCTTCTGTCTTCGGCGTCGCCCCATTTTCCGATTCTCTCTTTTTTCCTGTTTCGCTCAATCTCACCCATTGTCGCGGTTCGGCTGGAACAGAAAATCAGATCTCCTTTTAGCTTCTCAATTTGGAATTTGGTTGGAACATGGATGGAGAAATCCCCAACATAAAGAGATGGGTAGTTTTGTATCCCGTCTATATTAATTCAAAGAAGACAATAGCTGAAGGAAGACGTATCGGTGTTAGCAAAGCATGTGAGAATCCAACGTGTGCTGAGATTGGTGATTGCTGCAGTCATCTCAAACTGCCCTTTGCTATTGAGATTGATAAAGCTTATCCTCGTGATTTCATGCAACGAGGGAGAGTGCGGGTTCTGCTGAAGAAGGAGGATGGAACTCTGTCAAATCCAGCTATTCCTTCCAGAAAACAAATGATGCTTCGTATAGCCGAACTTGTTCCTAGACATCCTGGAAGGATAAAGAAGCAGGAGCCTGCATCATCATCAACTGCAGGACCTTCAAAAGGCAAGGGTGGAAGAAAGAAGAAATAATTACATTATGTAATTGCAAGAACCAGATTGTTAGCAACCAGGCAAGCAGTTTCATATTTAGGTCTTATTTCTTAATTCTTATCAACCTTTGAGTATTGGCGCTCTGCCCCTGCCCCCATCCGAAACGAAAACTACACAGTGGGTTTGTTTTGAACAATTTTGTAAAATAGTGGATCATGGAGTTTTACTGAGATGAATTTGCTGATAGGAGAAACGGATTATGGATGAGAATTAAGTTGAATGATCCACTCTTTTGCTTAAATCTTTCGAGATTGCCCGTCTTTGAATATGATCCAGGTTTCGAGATTGAAAAATGTGGAAATTTCTCAATATTTTTCCAGGGTCGGAATCTGGAAATATGAAAATATTGAGATCTTAGCTTATAATCTTGATCACAAACAGACTTGAAACTCTTTCCAGGTTTTGTGAAGATCAAGTTGTTTGTCATCTTCAGATTATTCAACATGAATTGGAGCTGTTCTTAGTGCACAGATACCTTCTTTTATACATATTGAATTTCTGGTGGTGGGTTATTTTGTGCC

Coding sequence (CDS)

ATGGATGGAGAAATCCCCAACATAAAGAGATGGGTAGTTTTGTATCCCGTCTATATTAATTCAAAGAAGACAATAGCTGAAGGAAGACGTATCGGTGTTAGCAAAGCATGTGAGAATCCAACGTGTGCTGAGATTGGTGATTGCTGCAGTCATCTCAAACTGCCCTTTGCTATTGAGATTGATAAAGCTTATCCTCGTGATTTCATGCAACGAGGGAGAGTGCGGGTTCTGCTGAAGAAGGAGGATGGAACTCTGTCAAATCCAGCTATTCCTTCCAGAAAACAAATGATGCTTCGTATAGCCGAACTTGTTCCTAGACATCCTGGAAGGATAAAGAAGCAGGAGCCTGCATCATCATCAACTGCAGGACCTTCAAAAGGCAAGGGTGGAAGAAAGAAGAAATAA

Protein sequence

MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQMMLRIAELVPRHPGRIKKQEPASSSTAGPSKGKGGRKKK

Homology

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BLAST of Cp4.1LG03g12000 vs. ExPASy Swiss-Prot
Match: P49964 (Signal recognition particle 19 kDa protein OS=Oryza sativa subsp. japonica OX=39947 GN=SRP19 PE=1 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.2e-49
Identity = 93/128 (72.66%), Postives = 111/128 (86.72%), Query Frame = 0


Query: 7   NIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPR 66
           +IK+W V+YPVY+NSKKT+AEGRRI   KAC +PTC EI DCCSHLK+P AIE+DKAYPR
Sbjct: 9   SIKKWNVIYPVYLNSKKTVAEGRRIASGKACPDPTCVEIADCCSHLKIPHAIELDKAYPR 68

Query: 67  DFMQRGRVRVLLKKEDGTLSNPAIPSRKQMMLRIAELVPRHPGRIKKQEPASSSTAGPSK 126
           DF Q GRVRV LKK+DG+  NPAI ++KQ+M++IAELVP+H GR KKQEPA+SSTAG SK
Sbjct: 69  DFFQVGRVRVQLKKDDGSPVNPAIKTKKQLMIQIAELVPKHHGRTKKQEPAASSTAGTSK 128

Query: 127 GKGGRKKK 135
           GKGG+KKK
Sbjct: 129 GKGGKKKK 136

[Close]

BLAST of Cp4.1LG03g12000 vs. ExPASy Swiss-Prot
Match: Q943Z6 (Signal recognition particle 19 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SRP19 PE=1 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 2.6e-49
Identity = 100/145 (68.97%), Postives = 114/145 (78.62%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MD    NIK+WVV+YPVYINSKKT+AEGRRI VSK+CENP C EI DCC HLKLP A+EI
Sbjct: 1   MDSGTINIKKWVVIYPVYINSKKTVAEGRRISVSKSCENPNCIEISDCCKHLKLPSAVEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQMMLRIAELVPRHPGRIKKQE----- 120
           DKAYPRDFMQ GRVRV LK+EDGTL NPAI SRK +M +IAELVPRHP R+KKQE     
Sbjct: 61  DKAYPRDFMQVGRVRVQLKREDGTLLNPAITSRKHLMQKIAELVPRHPERVKKQEAQKAK 120

Query: 121 ----PASSSTAGPS--KGKGGRKKK 135
                A++ST+G S   GKGG+KK+
Sbjct: 121 KQEPQATTSTSGTSSKSGKGGKKKR 145

[Close]

BLAST of Cp4.1LG03g12000 vs. ExPASy Swiss-Prot
Match: Q9D7A6 (Signal recognition particle 19 kDa protein OS=Mus musculus OX=10090 GN=Srp19 PE=1 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 5.0e-24
Identity = 64/131 (48.85%), Postives = 83/131 (63.36%), Query Frame = 0


Query: 10  RWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYP---- 69
           R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D CS + L   +E +K Y     
Sbjct: 14  RFIFIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNAFLEKNKMYSREWN 73

Query: 70  RDFMQRGRVRVLLKKEDGTLSNPAIPSRKQMMLRIAELVPRHPGRIKKQ---EPASSSTA 129
           RD   RGRVRV LK+EDG+L     PSRK +ML +AE++P+   R +K    +P      
Sbjct: 74  RDVQFRGRVRVQLKQEDGSLCLVQFPSRKSVMLYVAEMIPKLKTRTQKSGGADPILQQGE 133

Query: 130 GPSKGKGGRKK 134
           G  KGKG +KK
Sbjct: 134 GSKKGKGKKKK 144

[Close]

BLAST of Cp4.1LG03g12000 vs. ExPASy Swiss-Prot
Match: P09132 (Signal recognition particle 19 kDa protein OS=Homo sapiens OX=9606 GN=SRP19 PE=1 SV=3)

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-23
Identity = 65/131 (49.62%), Postives = 82/131 (62.60%), Query Frame = 0


Query: 10  RWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYP---- 69
           R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D CS + L   +E +K Y     
Sbjct: 14  RFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWN 73

Query: 70  RDFMQRGRVRVLLKKEDGTLSNPAIPSRKQMMLRIAELVPRHPGRIKKQEPASSST---A 129
           RD   RGRVRV LK+EDG+L     PSRK +ML  AE++P+   R +K   A  S     
Sbjct: 74  RDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQKTGGADQSLQQGE 133

Query: 130 GPSKGKGGRKK 134
           G  KGKG +KK
Sbjct: 134 GSKKGKGKKKK 144

[Close]

BLAST of Cp4.1LG03g12000 vs. ExPASy Swiss-Prot
Match: Q5RBR1 (Signal recognition particle 19 kDa protein OS=Pongo abelii OX=9601 GN=SRP19 PE=1 SV=2)

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-23
Identity = 65/131 (49.62%), Postives = 82/131 (62.60%), Query Frame = 0


Query: 10  RWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYP---- 69
           R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D CS + L   +E +K Y     
Sbjct: 14  RFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWN 73

Query: 70  RDFMQRGRVRVLLKKEDGTLSNPAIPSRKQMMLRIAELVPRHPGRIKKQEPASSST---A 129
           RD   RGRVRV LK+EDG+L     PSRK +ML  AE++P+   R +K   A  S     
Sbjct: 74  RDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQKTGGADQSLQQGE 133

Query: 130 GPSKGKGGRKK 134
           G  KGKG +KK
Sbjct: 134 GSKKGKGKKKK 144

[Close]

BLAST of Cp4.1LG03g12000 vs. NCBI nr
Match: XP_023526150.1 (signal recognition particle 19 kDa protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 269 bits (687), Expect = 8.78e-91
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQMMLRIAELVPRHPGRIKKQEPASSS 120
           DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQMMLRIAELVPRHPGRIKKQEPASSS
Sbjct: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQMMLRIAELVPRHPGRIKKQEPASSS 120

Query: 121 TAGPSKGKGGRKKK 134
           TAGPSKGKGGRKKK
Sbjct: 121 TAGPSKGKGGRKKK 134

[Close]

BLAST of Cp4.1LG03g12000 vs. NCBI nr
Match: XP_022955603.1 (signal recognition particle 19 kDa protein [Cucurbita moschata] >KAG7018547.1 Signal recognition particle 19 kDa protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 268 bits (684), Expect = 2.52e-90
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQMMLRIAELVPRHPGRIKKQEPASSS 120
           DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQ+MLRIAELVPRHPGRIKKQEPASSS
Sbjct: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQEPASSS 120

Query: 121 TAGPSKGKGGRKKK 134
           TAGPSKGKGGRKKK
Sbjct: 121 TAGPSKGKGGRKKK 134

[Close]

BLAST of Cp4.1LG03g12000 vs. NCBI nr
Match: XP_022979984.1 (signal recognition particle 19 kDa protein [Cucurbita maxima])

HSP 1 Score: 267 bits (683), Expect = 3.58e-90
Identity = 132/134 (98.51%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGEIPNIKRWVVLYP+YINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQMMLRIAELVPRHPGRIKKQEPASSS 120
           DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQ+MLRIAELVPRHPGRIKKQEPASSS
Sbjct: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQEPASSS 120

Query: 121 TAGPSKGKGGRKKK 134
           TAGPSKGKGGRKKK
Sbjct: 121 TAGPSKGKGGRKKK 134

[Close]

BLAST of Cp4.1LG03g12000 vs. NCBI nr
Match: KAG6582147.1 (Signal recognition particle 19 kDa protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 268 bits (684), Expect = 1.09e-89
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI
Sbjct: 44  MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 103

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQMMLRIAELVPRHPGRIKKQEPASSS 120
           DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQ+MLRIAELVPRHPGRIKKQEPASSS
Sbjct: 104 DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQEPASSS 163

Query: 121 TAGPSKGKGGRKKK 134
           TAGPSKGKGGRKKK
Sbjct: 164 TAGPSKGKGGRKKK 177

[Close]

BLAST of Cp4.1LG03g12000 vs. NCBI nr
Match: XP_038879562.1 (signal recognition particle 19 kDa protein [Benincasa hispida])

HSP 1 Score: 262 bits (670), Expect = 3.44e-88
Identity = 130/134 (97.01%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGEIPNIKRWVVLYP+YINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQMMLRIAELVPRHPGRIKKQEPASSS 120
           DKAYPRDFMQRGRVRVLLKKEDGTLSNPAI SRKQ+MLRIAELVPRHPGR KKQEPASSS
Sbjct: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120

Query: 121 TAGPSKGKGGRKKK 134
           TAGPSKGKGGRKKK
Sbjct: 121 TAGPSKGKGGRKKK 134

[Close]

BLAST of Cp4.1LG03g12000 vs. ExPASy TrEMBL
Match: A0A6J1GUF8 (signal recognition particle 19 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111457558 PE=4 SV=1)

HSP 1 Score: 268 bits (684), Expect = 1.22e-90
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQMMLRIAELVPRHPGRIKKQEPASSS 120
           DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQ+MLRIAELVPRHPGRIKKQEPASSS
Sbjct: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQEPASSS 120

Query: 121 TAGPSKGKGGRKKK 134
           TAGPSKGKGGRKKK
Sbjct: 121 TAGPSKGKGGRKKK 134

[Close]

BLAST of Cp4.1LG03g12000 vs. ExPASy TrEMBL
Match: A0A6J1IY39 (signal recognition particle 19 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111479513 PE=4 SV=1)

HSP 1 Score: 267 bits (683), Expect = 1.73e-90
Identity = 132/134 (98.51%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGEIPNIKRWVVLYP+YINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQMMLRIAELVPRHPGRIKKQEPASSS 120
           DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQ+MLRIAELVPRHPGRIKKQEPASSS
Sbjct: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQEPASSS 120

Query: 121 TAGPSKGKGGRKKK 134
           TAGPSKGKGGRKKK
Sbjct: 121 TAGPSKGKGGRKKK 134

[Close]

BLAST of Cp4.1LG03g12000 vs. ExPASy TrEMBL
Match: A0A1S3AYC2 (signal recognition particle 19 kDa protein OS=Cucumis melo OX=3656 GN=LOC103483920 PE=4 SV=1)

HSP 1 Score: 259 bits (663), Expect = 1.95e-87
Identity = 128/134 (95.52%), Postives = 131/134 (97.76%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGEIPNIKRWVVLYP+YINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQMMLRIAELVPRHPGRIKKQEPASSS 120
           DKAYPRDFMQRGRVRV LKKEDGTLSNPAI SRKQ+MLR+AELVPRHPGR KKQEPASSS
Sbjct: 61  DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRVAELVPRHPGRTKKQEPASSS 120

Query: 121 TAGPSKGKGGRKKK 134
           TAGPSKGKGGRKKK
Sbjct: 121 TAGPSKGKGGRKKK 134

[Close]

BLAST of Cp4.1LG03g12000 vs. ExPASy TrEMBL
Match: A0A6J1CAM2 (signal recognition particle 19 kDa protein OS=Momordica charantia OX=3673 GN=LOC111009488 PE=4 SV=1)

HSP 1 Score: 258 bits (660), Expect = 5.77e-87
Identity = 130/135 (96.30%), Postives = 132/135 (97.78%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGE+PNIKRWVVLYP+YINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI
Sbjct: 1   MDGEVPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQMMLRIAELVPRHPGRIKKQEPASSS 120
           DKAYPRDFMQRGRVRVLLKKEDGTLSNPAI SRKQMMLRIAELVPRHPGR KKQEPASSS
Sbjct: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQMMLRIAELVPRHPGRTKKQEPASSS 120

Query: 121 TAGPSK-GKGGRKKK 134
           TAGPSK GKGGRKKK
Sbjct: 121 TAGPSKSGKGGRKKK 135

[Close]

BLAST of Cp4.1LG03g12000 vs. ExPASy TrEMBL
Match: A0A0A0L5F9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171080 PE=4 SV=1)

HSP 1 Score: 258 bits (659), Expect = 7.64e-86
Identity = 128/134 (95.52%), Postives = 130/134 (97.01%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MDGEIPNIKRWVVLYP+YINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI
Sbjct: 68  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 127

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQMMLRIAELVPRHPGRIKKQEPASSS 120
           DKAYPRDFMQRGRVRV LKKEDG LSNPAI SRKQ+MLRIAELVPRHPGR KKQEPASSS
Sbjct: 128 DKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 187

Query: 121 TAGPSKGKGGRKKK 134
           TAGPSKGKGGRKKK
Sbjct: 188 TAGPSKGKGGRKKK 201

[Close]

BLAST of Cp4.1LG03g12000 vs. TAIR 10
Match: AT1G48160.1 (signal recognition particle 19 kDa protein, putative / SRP19, putative )

HSP 1 Score: 196.1 bits (497), Expect = 1.9e-50
Identity = 100/145 (68.97%), Postives = 114/145 (78.62%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60
           MD    NIK+WVV+YPVYINSKKT+AEGRRI VSK+CENP C EI DCC HLKLP A+EI
Sbjct: 1   MDSGTINIKKWVVIYPVYINSKKTVAEGRRISVSKSCENPNCIEISDCCKHLKLPSAVEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQMMLRIAELVPRHPGRIKKQE----- 120
           DKAYPRDFMQ GRVRV LK+EDGTL NPAI SRK +M +IAELVPRHP R+KKQE     
Sbjct: 61  DKAYPRDFMQVGRVRVQLKREDGTLLNPAITSRKHLMQKIAELVPRHPERVKKQEAQKAK 120

Query: 121 ----PASSSTAGPS--KGKGGRKKK 135
                A++ST+G S   GKGG+KK+
Sbjct: 121 KQEPQATTSTSGTSSKSGKGGKKKR 145

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g12000 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49964	1.2e-49	72.66	Signal recognition particle 19 kDa protein OS=Oryza sativa subsp. japonica OX=39...	[more]
Q943Z6	2.6e-49	68.97	Signal recognition particle 19 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
Q9D7A6	5.0e-24	48.85	Signal recognition particle 19 kDa protein OS=Mus musculus OX=10090 GN=Srp19 PE=...	[more]
P09132	1.1e-23	49.62	Signal recognition particle 19 kDa protein OS=Homo sapiens OX=9606 GN=SRP19 PE=1...	[more]
Q5RBR1	1.1e-23	49.62	Signal recognition particle 19 kDa protein OS=Pongo abelii OX=9601 GN=SRP19 PE=1...	[more]

BLAST of Cp4.1LG03g12000 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023526150.1	8.78e-91	100.00	signal recognition particle 19 kDa protein [Cucurbita pepo subsp. pepo]	[more]
XP_022955603.1	2.52e-90	99.25	signal recognition particle 19 kDa protein [Cucurbita moschata] >KAG7018547.1 Si...	[more]
XP_022979984.1	3.58e-90	98.51	signal recognition particle 19 kDa protein [Cucurbita maxima]	[more]
KAG6582147.1	1.09e-89	99.25	Signal recognition particle 19 kDa protein, partial [Cucurbita argyrosperma subs...	[more]
XP_038879562.1	3.44e-88	97.01	signal recognition particle 19 kDa protein [Benincasa hispida]	[more]

BLAST of Cp4.1LG03g12000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GUF8	1.22e-90	99.25	signal recognition particle 19 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1IY39	1.73e-90	98.51	signal recognition particle 19 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A1S3AYC2	1.95e-87	95.52	signal recognition particle 19 kDa protein OS=Cucumis melo OX=3656 GN=LOC1034839...	[more]
A0A6J1CAM2	5.77e-87	96.30	signal recognition particle 19 kDa protein OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A0A0L5F9	7.64e-86	95.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171080 PE=4 SV=1	[more]

BLAST of Cp4.1LG03g12000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G48160.1	1.9e-50	68.97	signal recognition particle 19 kDa protein, putative / SRP19, putative	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036521	Signal recognition particle, subunit SRP19-like superfamily	GENE3D	3.30.56.30		coord: 2..118 e-value: 6.3E-43 score: 148.0
IPR036521	Signal recognition particle, subunit SRP19-like superfamily	SUPERFAMILY	69695	SRP19	coord: 6..109
IPR002778	Signal recognition particle, SRP19 subunit	PFAM	PF01922	SRP19	coord: 13..106 e-value: 2.8E-29 score: 101.9
IPR002778	Signal recognition particle, SRP19 subunit	PANTHER	PTHR17453	SIGNAL RECOGNITION PARTICLE 19 KD PROTEIN	coord: 8..131
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g12000.1	Cp4.1LG03g12000.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006614	SRP-dependent cotranslational protein targeting to membrane
cellular_component	GO:0005786	signal recognition particle, endoplasmic reticulum targeting
cellular_component	GO:0048500	signal recognition particle
molecular_function	GO:0008312	7S RNA binding
molecular_function	GO:0004386	helicase activity