Cp4.1LG03g08310 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG03g08310
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	CRM domain-containing protein
Location	Cp4.1LG03: 2871203 .. 2875132 (-)
RNA-Seq Expression	Cp4.1LG03g08310
Synteny	Cp4.1LG03g08310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGTGATATTAGATTTTTTAAATAAAAATTATATGGTAAGAAATAAATTATGTATTAAAAATATTATTCGAAAAAATTAAATTAAAAAATAAAAAATATTTACTATAAAATGAAATTCAACCAAAATAAATGAAAATTTTAGCGAAAATGTAAAATGAAATAAACGTTACCGCCACCTCGCCCTGCTCCATCTCTACCTAGAATCGACTTGCTATCGGTTCGAGCCGACTCTTATTGGCTTGGGTTCAGCTCTCGCACCAATTCTCACCACCGTGGCTCACCATCGATCTCTCTCTCTCTCTCTCTGTGCGCAGGGTTCAGTCTCATTCACACTACCGTCGATTCTCTCTCCCAGCGTTGCCGTCGGTTGCTTTGACACGGCTGGTCTCTCGGATTCCCGCTATCCTCAGGTACAAGTTTTTCTGGGTTTTAAATTTCTTTTTAAGTTCGAGGAACTTGGAATTGTGATTTTCTTTGATTAGTGAGTATGTAAACGGATGATTTGGATTTTTTGTGGTTTTTTCCCCCTGAAATGTTAAGATAATGAGATGAAATTTCTGGTGTTACCTTTTGTCTGAGCTTTCTATATCGTTTCATTGTTAAATATTGTAAGTGATTATTAAAACTGTGGGAACAAAACTTGATTAATCATCTTCAAATTTATAGTGAGAAATGCCTAGGGGGATTTCTTTCTCATGTAATTTTCTTCCGTTCTAGTTAAAATGAAACAGGAGAGAGCAGAAATTTATCGAACCCAATCACTTAACTGGACTACGAGTGTGTAATTGTTGTTGGTTCGGCTCAGGTTTCATTTCAAAATGTCAGTGTCGCTCAATCTAGTTTAGTATGGAAGGGTTGGTGAATCGGTCTGATATCCAAGTTCTTTGTTGCCCATTGGTATGATCTGTAACTGAATTGGGAACTATTGCATTGGAGCTGCTAATGTATGAAGTTATTTGATTAATTATGGAATAAATTTATTTCCATTGTTTAAAAGTCTTTGAATTGAAAGTTGTACATGATGAAATAAGAACTTTATAAGGATTTTGATCAAACTTGTTTTGAATTATCGAGTTGCAGATACTTTCCACGAGTATGCTTTGTTCTTCGTTAAATCTATCTTTATTGTTTCCTTTTTCTTTTGCAGCATATTCAAATGAAATTATGGTCGCTTGACAACTAACTATGCTACAAGAAATATAGTTATATGGCAAAATCTTTGTTTCATAATCTTCGCAGAGCTTCTCTGCTTTTCAGGTCTTCATCTCTGAACCAACCATTTTTCAGGTACTCTTCAGTCAAGGTTCCTCCATCTTCTTAATATTATCGATGTGTTTTACTTTTGAACAGCAGTTTTCATCTTCTTTTCCTTAGATTTTCTGATCCATTGCTTTTAAAAAAATTTAACCTAGCTGACCGGGTTTGAGATTGGAAGAAAATGGATTGTATTTGACTTTGAAAGACAGAAATAGTGTAGAAGATATAACTTTTGATGAATTTTTTGGTTGAATTTTAACTGTGCTTACACCATATATTCTGTTGCAGACCTGTTTTTGGGGTTCCTGACTCTACTTTCTCTCATATAAAAATCTTTCCTCTGCTGAACATCTCAAAACCTTTGTTGGGATTTAGAAATTTAAGCTATGGTTCCGTGAATCTTGTCATATCCCAAGGGAAACCAAAGTTTGAAACACATGAAGTGGATCCTCCAAAAAAAGATAAGTGGAAGACTAAGAAAAAATTGAAGGTGCAGCGAAAGAGAGAGAAGCAGAAAAGAAAAGCAGCAAATAAGAAAGACCCTCGTCAACTGCGTGTAAAGGGGAAGAAAAAGCAGAAATTTTCAAATGCAGAAGAGAGAATCAAGCACAAGCTTGAAAAGGTCAGTAAAAAAAAGAACCGTTTCTATATATTTTATGGTATCACTAATGTTTTTGGCGAAGTTTTCTCATTTCAAAAGAAAAAGAATTACTTCATGAGCATTTCTCTTCGGTCTGATGCTGAACTACAGCGAGATGGTTTTCAAATTAATGGATGTTGGAAATTTTTCATATGTTTTCAGTTACAATTATAGAGATTTTGCTGCAGGCCAGGATTAAAGAAGCATTGCTGATTGAGAGATTGAAGCGGTATGAAGTTCCTAAAGTTCAAGGTCCTGTGGTGGAGCCACACAATCTGACTGCAGAGGAACGGTTTTATATGAAGAAAATGGGTCAAAAGAGGTCTAATTATGTACCTATTGGAAGAAGAGGAGTTTTTGGAGGTGTGATTTTAAACATGCACATGCATTGGAAGAAACACGAAACAGTTAAAGTTTTTTGCAAACCTTGTAAACCTGGCCAAGTGCGTGAGTACGCACAGGAAATTGCAAGATTGAGTGGAGGAATCCCGATACAGATAATTGGTGATGATACTATCATCTTCTATCGAGGAAAGGAATATGTGCAACCAGAAGTTATGTCACCAATTGATACATTGTCTAAGAAACGGGTTAGTTTTTAAATTTTCAGTTTTCATTAATGTATATGATGTCTTTTTCTTTTCTTTCTCTTTTTTATAATCGGAGTTCGTGGGCCAGTGCATCTTTATTTAAGACATAATAGCAAGGGAGGATATCAGTAGGACTATTTGGCTTTTCGACCATAAAATATGTGCGTGGGAGTCGGCTGTGTAGTTAAGTAATGGTATTGAAGTTAGAGAAGTGTGAGTTTCTCCTAAGCATATACTTTTCGTTTTTGGATTGATGGAGTGTCAATACATGGGAGGGAGAATTCAATCCTCTCAAAGACTTGGAGAGTGTAACGGCCCAAGTGGCCCAAGTCCACTGCTAGCAGATATTGTCCTCTTTGAGTTTTCTCTTTTGGGCTTTCTCTCAAGATTCTTAAGACGCGTCTGCTAGGGAGAGACTTCCACACCTTTATAAAGAAGTTTTCGTTCTCCTCTCTAACTGATGTGAGACTTTGTCAAGTTTTGACTCTTGTTGTGTAATTCCTATCAAGCTGTCGGTGTCGGTACCTAGAAAATAGTGCATCTTTTCCATTTTCATGTTTAGATTAGCTTGATCAGATAATAACGTGCTGACATTAGATTGTTGTATGAAAAGCTTTCATTTAACAGCAAATACCAAATGTTGCAAACTTGGTCTGTCTAATTAGATTTAATAGTTGTGTTATGGTAATGTTGACTTTTTGTTATCCAATCTGTTTGCTGCATGTATGCTTAAAACCTCAATGTTCATGTTTATGTGGATTCTGTTTGTAGGAAATTGATTATTAATAAAACATACCAATGGCTTCCCTCCTTGCAGGCACTAGAAAAGTCCAAGTACGAGCAATCCCTCGAGTGTGTTCGCCGATTCATTGCCATTGCTGAAAAGGAACTGGAGCTATATTACAGGCATGTTGCACTTTATGGTGACCCAAATGATAGGAATCCATTGTCCATCTTAGACCTTCCATCTGACAACTTGAAGAACTCACAGAAACATCAGGTCGATGAAATGGAAGACTCTCATTCTGCTGCTCTTTGCTTAGCATCTGATGTTATGAACAAGCAAAATCCTGAATTTTCGGATGACGAATCGTTAGAGATTGGAGAAGAATTTGCAGATTCCTGCTTTTCTACAAGTGAATCAGAATTTGAAAGTGACATATTAGATGATTTTGAACATGGGAGGATCGAAGGAAGTTTTTCTCAGACAGGAGAGATGTCCTCAACCACAATGAACACTTGTTCAGCTTCCCAGAACAAATTTGAGTATCATAACCAAGAACTACCGATACACATAAAAATGACATGAGACTGCAACCTGATTTTTTGTTCGACTTCAATGGATCTATGATCCAATGAAAACAGTTCATGGATGTATACCGAAACATTTTCAGAAATTATAGTAACTAACCGTTTCTAAGATGATATCAGCATGGGAA

mRNA sequence

ATGAACGGTTCAGTCTCATTCACACTACCGTCGATTCTCTCTCCCAGCGTTGCCGTCGGTTGCTTTGACACGGCTGGTCTCTCGGATTCCCGCTATCCTCAGAAATATAGTTATATGGCAAAATCTTTGTTTCATAATCTTCGCAGAGCTTCTCTGCTTTTCAGGTCTTCATCTCTGAACCAACCATTTTTCAGACCTGTTTTTGGGGTTCCTGACTCTACTTTCTCTCATATAAAAATCTTTCCTCTGCTGAACATCTCAAAACCTTTGTTGGGATTTAGAAATTTAAGCTATGGTTCCGTGAATCTTGTCATATCCCAAGGGAAACCAAAGTTTGAAACACATGAAGTGGATCCTCCAAAAAAAGATAAGTGGAAGACTAAGAAAAAATTGAAGGTGCAGCGAAAGAGAGAGAAGCAGAAAAGAAAAGCAGCAAATAAGAAAGACCCTCGTCAACTGCGTGTAAAGGGGAAGAAAAAGCAGAAATTTTCAAATGCAGAAGAGAGAATCAAGCACAAGCTTGAAAAGGCCAGGATTAAAGAAGCATTGCTGATTGAGAGATTGAAGCGGTATGAAGTTCCTAAAGTTCAAGGTCCTGTGGTGGAGCCACACAATCTGACTGCAGAGGAACGGTTTTATATGAAGAAAATGGGTCAAAAGAGGTCTAATTATGTACCTATTGGAAGAAGAGGAGCACTAGAAAAGTCCAAGTACGAGCAATCCCTCGAGTGTGTTCGCCGATTCATTGCCATTGCTGAAAAGGAACTGGAGCTATATTACAGGCATGTTGCACTTTATGGTGACCCAAATGATAGGAATCCATTGTCCATCTTAGACCTTCCATCTGACAACTTGAAGAACTCACAGAAACATCAGGTCGATGAAATGGAAGACTCTCATTCTGCTGCTCTTTGCTTAGCATCTGATGTTATGAACAAGCAAAATCCTGAATTTTCGGATGACGAATCGTTAGAGATTGGAGAAGAATTTGCAGATTCCTGCTTTTCTACAAGTGAATCAGAATTTGAAAGTGACATATTAGATGATTTTGAACATGGGAGGATCGAAGGAAGTTTTTCTCAGACAGGAGAGATGTCCTCAACCACAATGAACACTTGTTCAGCTTCCCAGAACAAATTTGAGTATCATAACCAAGAACTACCGATACACATAAAAATGACATGAGACTGCAACCTGATTTTTTGTTCGACTTCAATGGATCTATGATCCAATGAAAACAGTTCATGGATGTATACCGAAACATTTTCAGAAATTATAGTAACTAACCGTTTCTAAGATGATATCAGCATGGGAA

Coding sequence (CDS)

ATGAACGGTTCAGTCTCATTCACACTACCGTCGATTCTCTCTCCCAGCGTTGCCGTCGGTTGCTTTGACACGGCTGGTCTCTCGGATTCCCGCTATCCTCAGAAATATAGTTATATGGCAAAATCTTTGTTTCATAATCTTCGCAGAGCTTCTCTGCTTTTCAGGTCTTCATCTCTGAACCAACCATTTTTCAGACCTGTTTTTGGGGTTCCTGACTCTACTTTCTCTCATATAAAAATCTTTCCTCTGCTGAACATCTCAAAACCTTTGTTGGGATTTAGAAATTTAAGCTATGGTTCCGTGAATCTTGTCATATCCCAAGGGAAACCAAAGTTTGAAACACATGAAGTGGATCCTCCAAAAAAAGATAAGTGGAAGACTAAGAAAAAATTGAAGGTGCAGCGAAAGAGAGAGAAGCAGAAAAGAAAAGCAGCAAATAAGAAAGACCCTCGTCAACTGCGTGTAAAGGGGAAGAAAAAGCAGAAATTTTCAAATGCAGAAGAGAGAATCAAGCACAAGCTTGAAAAGGCCAGGATTAAAGAAGCATTGCTGATTGAGAGATTGAAGCGGTATGAAGTTCCTAAAGTTCAAGGTCCTGTGGTGGAGCCACACAATCTGACTGCAGAGGAACGGTTTTATATGAAGAAAATGGGTCAAAAGAGGTCTAATTATGTACCTATTGGAAGAAGAGGAGCACTAGAAAAGTCCAAGTACGAGCAATCCCTCGAGTGTGTTCGCCGATTCATTGCCATTGCTGAAAAGGAACTGGAGCTATATTACAGGCATGTTGCACTTTATGGTGACCCAAATGATAGGAATCCATTGTCCATCTTAGACCTTCCATCTGACAACTTGAAGAACTCACAGAAACATCAGGTCGATGAAATGGAAGACTCTCATTCTGCTGCTCTTTGCTTAGCATCTGATGTTATGAACAAGCAAAATCCTGAATTTTCGGATGACGAATCGTTAGAGATTGGAGAAGAATTTGCAGATTCCTGCTTTTCTACAAGTGAATCAGAATTTGAAAGTGACATATTAGATGATTTTGAACATGGGAGGATCGAAGGAAGTTTTTCTCAGACAGGAGAGATGTCCTCAACCACAATGAACACTTGTTCAGCTTCCCAGAACAAATTTGAGTATCATAACCAAGAACTACCGATACACATAAAAATGACATGA

Protein sequence

MNGSVSFTLPSILSPSVAVGCFDTAGLSDSRYPQKYSYMAKSLFHNLRRASLLFRSSSLNQPFFRPVFGVPDSTFSHIKIFPLLNISKPLLGFRNLSYGSVNLVISQGKPKFETHEVDPPKKDKWKTKKKLKVQRKREKQKRKAANKKDPRQLRVKGKKKQKFSNAEERIKHKLEKARIKEALLIERLKRYEVPKVQGPVVEPHNLTAEERFYMKKMGQKRSNYVPIGRRGALEKSKYEQSLECVRRFIAIAEKELELYYRHVALYGDPNDRNPLSILDLPSDNLKNSQKHQVDEMEDSHSAALCLASDVMNKQNPEFSDDESLEIGEEFADSCFSTSESEFESDILDDFEHGRIEGSFSQTGEMSSTTMNTCSASQNKFEYHNQELPIHIKMT

Homology

[Close]

BLAST of Cp4.1LG03g08310 vs. ExPASy Swiss-Prot
Match: Q9LT57 (CRM-domain containing factor CFM9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=CFM9 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 9.5e-07
Identity = 40/105 (38.10%), Postives = 66/105 (62.86%), Query Frame = 0


Query: 127 TKKKLKVQRKREKQKRKAANKKDPRQLRVKGKKKQKFSNAEERIKHKLEKARIKEALLIE 186
           T +   ++ K E + RK +  K  R++R   K K+K    EER+ + L++A+ K ALL++
Sbjct: 14  TSRGRSMRSKVESRMRKESG-KTLREIRRAKKLKKKLMTDEERLIYNLKRAKKKVALLLQ 73

Query: 187 RLKRYEVPKVQGPVVEPHNLTAEERFYMKKMGQKRSNYVPIGRRG 232
           +LK+Y++P++  PV +P   T+E+    KK+G K  NYVP+G RG
Sbjct: 74  KLKKYDLPELPSPVHDPELFTSEQVQAFKKIGFKNKNYVPVGVRG 117

[Close]

BLAST of Cp4.1LG03g08310 vs. ExPASy Swiss-Prot
Match: Q67XL4 (Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g25440 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 9.5e-07
Identity = 43/96 (44.79%), Postives = 57/96 (59.38%), Query Frame = 0


Query: 136 KREKQKRKAANKKDPRQLRVKGKKKQKFSNAEERIKHKLEKARIKEALLIERLKRYEVPK 195
           KR+K K K A  +  +  R K KK+ +   +EE+I +KL KAR KE  L+E +K+ E  +
Sbjct: 107 KRKKLKGKRAVVRWLKFFRWKKKKEFERMTSEEKILNKLRKARKKEERLMETMKKLEPSE 166

Query: 196 VQGPVVEPHNLTAEERFYMKKMGQKRSNYVPIGRRG 232
                 +P  LT EE FY  KMG K  NYVP+GRRG
Sbjct: 167 SAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRG 202

[Close]

BLAST of Cp4.1LG03g08310 vs. NCBI nr
Match: XP_023526219.1 (CRM-domain containing factor CFM2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 642 bits (1656), Expect = 3.40e-229
Identity = 356/435 (81.84%), Postives = 356/435 (81.84%), Query Frame = 0


Query: 39  MAKSLFHNLRRASLLFRSSSLNQPFFRPVFGVPDSTFSHIKIFPLLNISKPLLGFRNLSY 98
           MAKSLFHNLRRASLLFRSSSLNQPFFRPVFGVPDSTFSHIKIFPLLNISKPLLGFRNLSY
Sbjct: 1   MAKSLFHNLRRASLLFRSSSLNQPFFRPVFGVPDSTFSHIKIFPLLNISKPLLGFRNLSY 60

Query: 99  GSVNLVISQGKPKFETHEVDPPKKDKWKTKKKLKVQRKREKQKRKAANKKDPRQLRVKGK 158
           GSVNLVISQGKPKFETHEVDPPKKDKWKTKKKLKVQRKREKQKRKAANKKDPRQLRVKGK
Sbjct: 61  GSVNLVISQGKPKFETHEVDPPKKDKWKTKKKLKVQRKREKQKRKAANKKDPRQLRVKGK 120

Query: 159 KKQKFSNAEERIKHKLEKARIKEALLIERLKRYEVPKVQGPVVEPHNLTAEERFYMKKMG 218
           KKQKFSNAEERIKHKLEKARIKEALLIERLKRYEVPKVQGPVVEPHNLTAEERFYMKKMG
Sbjct: 121 KKQKFSNAEERIKHKLEKARIKEALLIERLKRYEVPKVQGPVVEPHNLTAEERFYMKKMG 180

Query: 219 QKRSNYVPIGRRG----------------------------------------------- 278
           QKRSNYVPIGRRG                                               
Sbjct: 181 QKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPCKPGQVREYAQEIARLSGGIPI 240

Query: 279 --------------------------------ALEKSKYEQSLECVRRFIAIAEKELELY 338
                                           ALEKSKYEQSLECVRRFIAIAEKELELY
Sbjct: 241 QIIGDDTIIFYRGKEYVQPEVMSPIDTLSKKRALEKSKYEQSLECVRRFIAIAEKELELY 300

Query: 339 YRHVALYGDPNDRNPLSILDLPSDNLKNSQKHQVDEMEDSHSAALCLASDVMNKQNPEFS 394
           YRHVALYGDPNDRNPLSILDLPSDNLKNSQKHQVDEMEDSHSAALCLASDVMNKQNPEFS
Sbjct: 301 YRHVALYGDPNDRNPLSILDLPSDNLKNSQKHQVDEMEDSHSAALCLASDVMNKQNPEFS 360

[Close]

BLAST of Cp4.1LG03g08310 vs. NCBI nr
Match: KAG7017679.1 (putative CRM domain-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 622 bits (1605), Expect = 1.97e-221
Identity = 346/435 (79.54%), Postives = 352/435 (80.92%), Query Frame = 0


Query: 39  MAKSLFHNLRRASLLFRSSSLNQPFFRPVFGVPDSTFSHIKIFPLLNISKPLLGFRNLSY 98
           MAKSLFHNLRRASLLFRSSSLNQPFFRPV GVPDSTFS IK FPLLNIS+PLLGFRNLSY
Sbjct: 1   MAKSLFHNLRRASLLFRSSSLNQPFFRPVLGVPDSTFSRIKNFPLLNISRPLLGFRNLSY 60

Query: 99  GSVNLVISQGKPKFETHEVDPPKKDKWKTKKKLKVQRKREKQKRKAANKKDPRQLRVKGK 158
           GSVNLVISQGKPKFETHEVDPPKKDKWKTKKKLK+QRKREKQKRKAANKKDPRQLRVKGK
Sbjct: 61  GSVNLVISQGKPKFETHEVDPPKKDKWKTKKKLKMQRKREKQKRKAANKKDPRQLRVKGK 120

Query: 159 KKQKFSNAEERIKHKLEKARIKEALLIERLKRYEVPKVQGPVVEPHNLTAEERFYMKKMG 218
           KKQKFSNAEERIKHKLEKARIKEALLIERLKRYEVP+VQGPVVEPHNLTAEERFYMKKMG
Sbjct: 121 KKQKFSNAEERIKHKLEKARIKEALLIERLKRYEVPRVQGPVVEPHNLTAEERFYMKKMG 180

Query: 219 QKRSNYVPIGRRG----------------------------------------------- 278
           QKRSNYVPIGRRG                                               
Sbjct: 181 QKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPCKPGQVHEYAQEIARLSGGIPI 240

Query: 279 --------------------------------ALEKSKYEQSLECVRRFIAIAEKELELY 338
                                           ALEKSKYEQSLE VRRFIAIAEKELELY
Sbjct: 241 QIIGDDTIIFYRGKEYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELY 300

Query: 339 YRHVALYGDPNDRNPLSILDLPSDNLKNSQKHQVDEMEDSHSAALCLASDVMNKQNPEFS 394
           YRHVALYGDPNDRNPLSILDLPSDNLKNSQKHQVDEMEDSHSAALCLASDVMNK+NPEFS
Sbjct: 301 YRHVALYGDPNDRNPLSILDLPSDNLKNSQKHQVDEMEDSHSAALCLASDVMNKRNPEFS 360

[Close]

BLAST of Cp4.1LG03g08310 vs. NCBI nr
Match: XP_022935659.1 (uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Cucurbita moschata])

HSP 1 Score: 622 bits (1604), Expect = 2.80e-221
Identity = 347/435 (79.77%), Postives = 351/435 (80.69%), Query Frame = 0


Query: 39  MAKSLFHNLRRASLLFRSSSLNQPFFRPVFGVPDSTFSHIKIFPLLNISKPLLGFRNLSY 98
           MAKSLFHNLRRASLLFRSSSLNQPFFRPV GVPDSTFS IK FPLLNISKPLLGFRNLSY
Sbjct: 1   MAKSLFHNLRRASLLFRSSSLNQPFFRPVLGVPDSTFSRIKNFPLLNISKPLLGFRNLSY 60

Query: 99  GSVNLVISQGKPKFETHEVDPPKKDKWKTKKKLKVQRKREKQKRKAANKKDPRQLRVKGK 158
           GSVNLVISQGKPKFETHEVDPPKKDKWKTKKKLK+QRKREKQKRKAANKKDPRQLRVKGK
Sbjct: 61  GSVNLVISQGKPKFETHEVDPPKKDKWKTKKKLKMQRKREKQKRKAANKKDPRQLRVKGK 120

Query: 159 KKQKFSNAEERIKHKLEKARIKEALLIERLKRYEVPKVQGPVVEPHNLTAEERFYMKKMG 218
           KKQKFSNAEERIKHKLEKARIKEALLIERLKRYEVP+VQGPVVEPHNLTAEERFYMKKMG
Sbjct: 121 KKQKFSNAEERIKHKLEKARIKEALLIERLKRYEVPRVQGPVVEPHNLTAEERFYMKKMG 180

Query: 219 QKRSNYVPIGRRG----------------------------------------------- 278
           QKRSNYVPIGRRG                                               
Sbjct: 181 QKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPCKPGQVHEYAQEIARLSGGIPI 240

Query: 279 --------------------------------ALEKSKYEQSLECVRRFIAIAEKELELY 338
                                           ALEKSKYEQSLE VRRFIAIAEKELELY
Sbjct: 241 QIIGDDTIIFYRGKEYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELY 300

Query: 339 YRHVALYGDPNDRNPLSILDLPSDNLKNSQKHQVDEMEDSHSAALCLASDVMNKQNPEFS 394
           YRHVALYGDPNDRNPLSILDLPSDNLKNS KHQVDEMEDSHSAALCLASDVMNK+NPEFS
Sbjct: 301 YRHVALYGDPNDRNPLSILDLPSDNLKNSLKHQVDEMEDSHSAALCLASDVMNKRNPEFS 360

[Close]

BLAST of Cp4.1LG03g08310 vs. NCBI nr
Match: KAG6580934.1 (putative CRM domain-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 601 bits (1549), Expect = 1.61e-212
Identity = 335/424 (79.01%), Postives = 341/424 (80.42%), Query Frame = 0


Query: 50  ASLLFRSSSLNQPFFRPVFGVPDSTFSHIKIFPLLNISKPLLGFRNLSYGSVNLVISQGK 109
           ASLLFRSSSLNQPFFRPV GVPDSTFS IK FPLLNIS+PLLGFRNLSYGSVNLVISQGK
Sbjct: 37  ASLLFRSSSLNQPFFRPVLGVPDSTFSRIKNFPLLNISRPLLGFRNLSYGSVNLVISQGK 96

Query: 110 PKFETHEVDPPKKDKWKTKKKLKVQRKREKQKRKAANKKDPRQLRVKGKKKQKFSNAEER 169
           PKFETHEVDPPKKDKWKTKKKLK+QRKREKQKRKAANKKDPRQLRVKGKKKQKFSNAEER
Sbjct: 97  PKFETHEVDPPKKDKWKTKKKLKMQRKREKQKRKAANKKDPRQLRVKGKKKQKFSNAEER 156

Query: 170 IKHKLEKARIKEALLIERLKRYEVPKVQGPVVEPHNLTAEERFYMKKMGQKRSNYVPIGR 229
           IKHKLEKARIKEALLIERLKRYEVP+VQGPVVEPHNLTAEERFYMKKMGQKRSNYVPIGR
Sbjct: 157 IKHKLEKARIKEALLIERLKRYEVPRVQGPVVEPHNLTAEERFYMKKMGQKRSNYVPIGR 216

Query: 230 RG---------------------------------------------------------- 289
           RG                                                          
Sbjct: 217 RGVFGGVILNMHMHWKKHETVKVFCKPCKPGQVHEYAQEIARLSGGIPIQIIGDDTIIFY 276

Query: 290 ---------------------ALEKSKYEQSLECVRRFIAIAEKELELYYRHVALYGDPN 349
                                ALEKSKYEQSLE VRRFIAIAEKELELYYRHVALYGDPN
Sbjct: 277 RGKEYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPN 336

Query: 350 DRNPLSILDLPSDNLKNSQKHQVDEMEDSHSAALCLASDVMNKQNPEFSDDESLEIGEEF 394
           DRNPLSILDLPSDNLKNSQKHQVDEMEDSHSAALCLASDVMNK+NPEFSDDESLEIGEEF
Sbjct: 337 DRNPLSILDLPSDNLKNSQKHQVDEMEDSHSAALCLASDVMNKRNPEFSDDESLEIGEEF 396

[Close]

BLAST of Cp4.1LG03g08310 vs. NCBI nr
Match: XP_038903000.1 (CRM-domain containing factor CFM9, mitochondrial [Benincasa hispida] >XP_038903001.1 CRM-domain containing factor CFM9, mitochondrial [Benincasa hispida])

HSP 1 Score: 525 bits (1352), Expect = 4.93e-183
Identity = 299/430 (69.53%), Postives = 324/430 (75.35%), Query Frame = 0


Query: 39  MAKSLFHNLRRASLLFRSSSLNQPFFRPVFGVPDSTFSHIKIFPLLNISKPLLGFRNLSY 98
           MAKSLFHNLRRASLLFRSSSLNQP FRP+ GV D+ FS I  F L NISKPLLGFRNLS+
Sbjct: 1   MAKSLFHNLRRASLLFRSSSLNQPSFRPILGVSDTIFSQINNFTLPNISKPLLGFRNLSH 60

Query: 99  GSVNLVISQGKPKFETHEVDPPKKDKWKTKKKLKVQRKREKQKRKAANKKDPRQLRVKGK 158
           GSVNLVISQGKPKFETHEVDPPKKDKWKTK+KLK+QRKREKQKRKA NKKDPRQLRVKGK
Sbjct: 61  GSVNLVISQGKPKFETHEVDPPKKDKWKTKRKLKMQRKREKQKRKAENKKDPRQLRVKGK 120

Query: 159 KKQKFSNAEERIKHKLEKARIKEALLIERLKRYEVPKVQGPVVEPHNLTAEERFYMKKMG 218
           KKQKFSNAEERIKHKLEKARIKEALL+ERLKRYEVP+VQGP+V+PHNLTAEERFYMKKMG
Sbjct: 121 KKQKFSNAEERIKHKLEKARIKEALLVERLKRYEVPRVQGPIVKPHNLTAEERFYMKKMG 180

Query: 219 QKRSNYVPIGRRG----------------------------------------------- 278
           QKRSNYVPIGRRG                                               
Sbjct: 181 QKRSNYVPIGRRGIFGGVILNMHMHWKKHETVKVFCKPCKPGQVHEYAQEIARLSGGIPI 240

Query: 279 --------------------------------ALEKSKYEQSLECVRRFIAIAEKELELY 338
                                           ALEKSKYEQSLE VRRFIAIAEKELELY
Sbjct: 241 QIIGDDTIIFYRGKEYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELY 300

Query: 339 YRHVALYGDPNDRNPLSILDLPSDNLKNSQKHQVDEMEDSHSAALCLASDVMNKQNPEFS 389
           YRHVALYGDPNDRNPLSILD+PS+N   S KHQV++++DSHSAALCLAS+V N++NP+F 
Sbjct: 301 YRHVALYGDPNDRNPLSILDIPSNNY--SHKHQVNKLDDSHSAALCLASEVTNQRNPDFW 360

[Close]

BLAST of Cp4.1LG03g08310 vs. ExPASy TrEMBL
Match: A0A6J1F621 (uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111442450 PE=4 SV=1)

HSP 1 Score: 622 bits (1604), Expect = 1.35e-221
Identity = 347/435 (79.77%), Postives = 351/435 (80.69%), Query Frame = 0


Query: 39  MAKSLFHNLRRASLLFRSSSLNQPFFRPVFGVPDSTFSHIKIFPLLNISKPLLGFRNLSY 98
           MAKSLFHNLRRASLLFRSSSLNQPFFRPV GVPDSTFS IK FPLLNISKPLLGFRNLSY
Sbjct: 1   MAKSLFHNLRRASLLFRSSSLNQPFFRPVLGVPDSTFSRIKNFPLLNISKPLLGFRNLSY 60

Query: 99  GSVNLVISQGKPKFETHEVDPPKKDKWKTKKKLKVQRKREKQKRKAANKKDPRQLRVKGK 158
           GSVNLVISQGKPKFETHEVDPPKKDKWKTKKKLK+QRKREKQKRKAANKKDPRQLRVKGK
Sbjct: 61  GSVNLVISQGKPKFETHEVDPPKKDKWKTKKKLKMQRKREKQKRKAANKKDPRQLRVKGK 120

Query: 159 KKQKFSNAEERIKHKLEKARIKEALLIERLKRYEVPKVQGPVVEPHNLTAEERFYMKKMG 218
           KKQKFSNAEERIKHKLEKARIKEALLIERLKRYEVP+VQGPVVEPHNLTAEERFYMKKMG
Sbjct: 121 KKQKFSNAEERIKHKLEKARIKEALLIERLKRYEVPRVQGPVVEPHNLTAEERFYMKKMG 180

Query: 219 QKRSNYVPIGRRG----------------------------------------------- 278
           QKRSNYVPIGRRG                                               
Sbjct: 181 QKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPCKPGQVHEYAQEIARLSGGIPI 240

Query: 279 --------------------------------ALEKSKYEQSLECVRRFIAIAEKELELY 338
                                           ALEKSKYEQSLE VRRFIAIAEKELELY
Sbjct: 241 QIIGDDTIIFYRGKEYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELY 300

Query: 339 YRHVALYGDPNDRNPLSILDLPSDNLKNSQKHQVDEMEDSHSAALCLASDVMNKQNPEFS 394
           YRHVALYGDPNDRNPLSILDLPSDNLKNS KHQVDEMEDSHSAALCLASDVMNK+NPEFS
Sbjct: 301 YRHVALYGDPNDRNPLSILDLPSDNLKNSLKHQVDEMEDSHSAALCLASDVMNKRNPEFS 360

[Close]

BLAST of Cp4.1LG03g08310 vs. ExPASy TrEMBL
Match: A0A5A7UFD6 (CRM-domain containing factor CFM3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G007520 PE=4 SV=1)

HSP 1 Score: 521 bits (1342), Expect = 8.47e-182
Identity = 293/431 (67.98%), Postives = 322/431 (74.71%), Query Frame = 0


Query: 39  MAKSLFHNLRRASLLFRSSSLNQPFFRPVFGVPDSTFSHIKIFPLLNISKPLLGFRNLSY 98
           MAKSLFHNLRRASLLFRSSSLNQ  FRP+  +PD+ FS IK FP  NISKPLLGFRNLS+
Sbjct: 1   MAKSLFHNLRRASLLFRSSSLNQLSFRPILVIPDTVFSQIKNFPEANISKPLLGFRNLSH 60

Query: 99  GSVNLVISQGKPKFETHEVDPPKKDKWKTKKKLKVQRKREKQKRKAANKKDPRQLRVKGK 158
           GSVNLV++QGKPKFETH VDPPKK+KWKTKKKLK+QR R KQKRKAANK+DPRQLRVKGK
Sbjct: 61  GSVNLVVTQGKPKFETHVVDPPKKEKWKTKKKLKMQRMRSKQKRKAANKRDPRQLRVKGK 120

Query: 159 KKQKFSNAEERIKHKLEKARIKEALLIERLKRYEVPKVQGPVVEPHNLTAEERFYMKKMG 218
           KKQKF NA ERIK+KLE+ARIKEALLIERLKRYEVP+VQGP+V+PHNLTAEERFY+KKMG
Sbjct: 121 KKQKFPNAAERIKNKLERARIKEALLIERLKRYEVPEVQGPIVKPHNLTAEERFYIKKMG 180

Query: 219 QKRSNYVPIGRRG----------------------------------------------- 278
           QKRSNYVPIGRRG                                               
Sbjct: 181 QKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPI 240

Query: 279 --------------------------------ALEKSKYEQSLECVRRFIAIAEKELELY 338
                                           ALEKSKYEQSLE VRRFIAIAEKELELY
Sbjct: 241 QIIGDDTIIFYRGKEYVQPEVMSPIGTLSKKRALEKSKYEQSLESVRRFIAIAEKELELY 300

Query: 339 YRHVALYGDPNDRNPLSILDLPSDNLKNSQKHQVDEMEDSHSAALCLASDVMNKQNPEFS 390
           YRH+ALYGDPNDRNPLSIL++PSDNLKNS KHQ+  MEDSHSAALCL SDVMN++NP+FS
Sbjct: 301 YRHIALYGDPNDRNPLSILNVPSDNLKNSDKHQITNMEDSHSAALCLESDVMNQRNPDFS 360

[Close]

BLAST of Cp4.1LG03g08310 vs. ExPASy TrEMBL
Match: A0A1S3B7C2 (CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Cucumis melo OX=3656 GN=LOC103486957 PE=4 SV=1)

HSP 1 Score: 521 bits (1342), Expect = 8.47e-182
Identity = 293/431 (67.98%), Postives = 322/431 (74.71%), Query Frame = 0


Query: 39  MAKSLFHNLRRASLLFRSSSLNQPFFRPVFGVPDSTFSHIKIFPLLNISKPLLGFRNLSY 98
           MAKSLFHNLRRASLLFRSSSLNQ  FRP+  +PD+ FS IK FP  NISKPLLGFRNLS+
Sbjct: 1   MAKSLFHNLRRASLLFRSSSLNQLSFRPILVIPDTVFSQIKNFPEANISKPLLGFRNLSH 60

Query: 99  GSVNLVISQGKPKFETHEVDPPKKDKWKTKKKLKVQRKREKQKRKAANKKDPRQLRVKGK 158
           GSVNLV++QGKPKFETH VDPPKK+KWKTKKKLK+QR R KQKRKAANK+DPRQLRVKGK
Sbjct: 61  GSVNLVVTQGKPKFETHVVDPPKKEKWKTKKKLKMQRMRSKQKRKAANKRDPRQLRVKGK 120

Query: 159 KKQKFSNAEERIKHKLEKARIKEALLIERLKRYEVPKVQGPVVEPHNLTAEERFYMKKMG 218
           KKQKF NA ERIK+KLE+ARIKEALLIERLKRYEVP+VQGP+V+PHNLTAEERFY+KKMG
Sbjct: 121 KKQKFPNAAERIKNKLERARIKEALLIERLKRYEVPEVQGPIVKPHNLTAEERFYIKKMG 180

Query: 219 QKRSNYVPIGRRG----------------------------------------------- 278
           QKRSNYVPIGRRG                                               
Sbjct: 181 QKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPI 240

Query: 279 --------------------------------ALEKSKYEQSLECVRRFIAIAEKELELY 338
                                           ALEKSKYEQSLE VRRFIAIAEKELELY
Sbjct: 241 QIIGDDTIIFYRGKEYVQPEVMSPIGTLSKKRALEKSKYEQSLESVRRFIAIAEKELELY 300

Query: 339 YRHVALYGDPNDRNPLSILDLPSDNLKNSQKHQVDEMEDSHSAALCLASDVMNKQNPEFS 390
           YRH+ALYGDPNDRNPLSIL++PSDNLKNS KHQ+  MEDSHSAALCL SDVMN++NP+FS
Sbjct: 301 YRHIALYGDPNDRNPLSILNVPSDNLKNSDKHQITNMEDSHSAALCLESDVMNQRNPDFS 360

[Close]

BLAST of Cp4.1LG03g08310 vs. ExPASy TrEMBL
Match: A0A6J1J3F1 (uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111482313 PE=4 SV=1)

HSP 1 Score: 506 bits (1302), Expect = 1.54e-176
Identity = 287/378 (75.93%), Postives = 290/378 (76.72%), Query Frame = 0


Query: 39  MAKSLFHNLRRASLLFRSSSLNQPFFRPVFGVPDSTFSHIKIFPLLNISKPLLGFRNLSY 98
           MAKSLFHNLRRASLLFRS SL QPFFRPV GVPDSTFSHIK  PLLNISKP LGFRNLSY
Sbjct: 1   MAKSLFHNLRRASLLFRSLSLKQPFFRPVLGVPDSTFSHIKNIPLLNISKPFLGFRNLSY 60

Query: 99  GSVNLVISQGKPKFETHEVDPPKKDKWKTKKKLKVQRKREKQKRKAANKKDPRQLRVKGK 158
           GSVNLVISQGKPKFETHEVDPPKKDKWKTKKKLK+QR REKQKRKAANKKDPRQLRVKGK
Sbjct: 61  GSVNLVISQGKPKFETHEVDPPKKDKWKTKKKLKMQRMREKQKRKAANKKDPRQLRVKGK 120

Query: 159 KKQKFSNAEERIKHKLEKARIKEALLIERLKRYEVPKVQGPVVEPHNLTAEERFYMKKMG 218
           KKQKFSNAEERIKHKLEKARIKEALLIERLKRYEVPKVQGPVVEPHNLTAEERFYMKKMG
Sbjct: 121 KKQKFSNAEERIKHKLEKARIKEALLIERLKRYEVPKVQGPVVEPHNLTAEERFYMKKMG 180

Query: 219 QKRSNYVPIGRRG----------------------------------------------- 278
           QKRSNYVPIGRRG                                               
Sbjct: 181 QKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPCKPGQVHEYAQEIARLSGGIPI 240

Query: 279 --------------------------------ALEKSKYEQSLECVRRFIAIAEKELELY 337
                                           ALEKSKYEQSLE VRRFIAIAEKELELY
Sbjct: 241 QIIGDDTIIFYRGKEYVQPVVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELY 300

[Close]

BLAST of Cp4.1LG03g08310 vs. ExPASy TrEMBL
Match: A0A0A0LF61 (CRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G823620 PE=4 SV=1)

HSP 1 Score: 465 bits (1197), Expect = 3.97e-160
Identity = 271/431 (62.88%), Postives = 300/431 (69.61%), Query Frame = 0


Query: 39  MAKSLFHNLRRASLLFRSSSLNQPFFRPVFGVPDSTFSHIKIFPLLNISKPLLGFRNLSY 98
           MAKSLFHNLRRA LLFRSSSLNQ  FRP+  +PD+ FS IK FP  NISKPLLGFRNLS+
Sbjct: 1   MAKSLFHNLRRAPLLFRSSSLNQLSFRPILEIPDTVFSQIKKFPEANISKPLLGFRNLSH 60

Query: 99  GSVNLVISQGKPKFETHEVDPPKKDKWKTKKKLKVQRKREKQKRKAANKKDPRQLRVKGK 158
           GSVNLV+SQGKPKFETHEVDPPKK+KWKTKKKLK+QR R KQKRKAANK+DPRQLR    
Sbjct: 61  GSVNLVVSQGKPKFETHEVDPPKKEKWKTKKKLKMQRMRLKQKRKAANKRDPRQLR---- 120

Query: 159 KKQKFSNAEERIKHKLEKARIKEALLIERLKRYEVPKVQGPVVEPHNLTAEERFYMKKMG 218
                             ARIKEALLIERL+RYEVPKVQGP+V+PH+LT EERFY+KKMG
Sbjct: 121 ------------------ARIKEALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKMG 180

Query: 219 QKRSNYVPIGRRG----------------------------------------------- 278
           QKRSNYVPIGRRG                                               
Sbjct: 181 QKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPI 240

Query: 279 --------------------------------ALEKSKYEQSLECVRRFIAIAEKELELY 338
                                           ALEKSKYEQSLE VRRFIAIAEKELELY
Sbjct: 241 QIIGDDTIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELY 300

Query: 339 YRHVALYGDPNDRNPLSILDLPSDNLKNSQKHQVDEMEDSHSAALCLASDVMNKQNPEFS 390
           YRH+ALYGDPNDRNPLSIL++PSDNL NS K+Q+  MEDSHSAALCLASDVMN++NP+FS
Sbjct: 301 YRHIALYGDPNDRNPLSILNVPSDNL-NSDKYQITNMEDSHSAALCLASDVMNQRNPDFS 360

[Close]

BLAST of Cp4.1LG03g08310 vs. TAIR 10
Match: AT2G28480.1 (RNA-binding CRS1 / YhbY (CRM) domain protein )

HSP 1 Score: 248.1 bits (632), Expect = 1.2e-65
Identity = 177/386 (45.85%), Postives = 213/386 (55.18%), Query Frame = 0


Query: 39  MAKSLFHNLRRASLLFRSSSLNQPFFRPVFGVPDSTFSHIKIFPLLNISKPLLGFRNLSY 98
           MA +    LR+AS   RSS    P       +P S   +      +  ++P+    +  Y
Sbjct: 1   MAIAFARGLRKASSFLRSS---YPLLISSRLLPISQEFYDSTLTFVLPTRPICRNFSHGY 60

Query: 99  GSVNLVISQGKPKFETHEVDPPKKDKWKTKKKLKVQRKREKQKRKAANKKDPRQLRVKGK 158
           G+VNLVIS+GKPKFET E+DPPKK KW TKK+LK++RK+E+++R AAN+KDPR+L VKGK
Sbjct: 61  GTVNLVISEGKPKFETRELDPPKKYKWLTKKRLKLKRKKEREERNAANRKDPRRLTVKGK 120

Query: 159 KKQKFSNAEERIKHKLEKARIKEALLIERLKRYEVPKVQGPVVEPHNLTAEERFYMKKMG 218
           KK KF NAEERIK+KLEKA+IKEALLIERLKRYEV KVQGP V PH +T EERFY+KKMG
Sbjct: 121 KK-KFVNAEERIKYKLEKAKIKEALLIERLKRYEVAKVQGPEVRPHEITGEERFYLKKMG 180

Query: 219 QKRSNYVPIGRRG----------------------------------------------- 278
           QKRSNYVPIGRRG                                               
Sbjct: 181 QKRSNYVPIGRRGVFGGVILNMHLHWKKHETVKVICNNSKPGQVQQYAEELAKLSGGVPV 240

Query: 279 --------------------------------ALEKSKYEQSLECVRRFIAIAEKELELY 338
                                           A EKSKYEQSLE VR FIAIAEKELELY
Sbjct: 241 NIIGDDTIIFYRGKGYVQPQVMSPIDTLSKKRAYEKSKYEQSLESVRHFIAIAEKELELY 300

Query: 339 YRHVALYGDPNDRNPLSILDLPSDNLKNSQKHQVDEMEDSHSAALCLASDVMNKQNPEFS 346
           YRHVALY DPN+RNPLSILD   D+   S++H  +E            SD  +    E  
Sbjct: 301 YRHVALYDDPNNRNPLSILD---DSPSESRQHHENEF-------FLSCSDTDSSSEDEDE 360

[Close]

BLAST of Cp4.1LG03g08310 vs. TAIR 10
Match: AT4G13070.1 (RNA-binding CRS1 / YhbY (CRM) domain protein )

HSP 1 Score: 73.6 bits (179), Expect = 4.1e-13
Identity = 75/262 (28.63%), Postives = 107/262 (40.84%), Query Frame = 0


Query: 90  LLGFRNLSYGSVNLVISQGKPKFETHEVDPPKKDKWKTKKKLKVQRKREKQKRKAANKKD 149
           L   R LS  ++ L       +F  + V     +   T+K+ K +R +  +K K     +
Sbjct: 69  LFSRRYLSNSTIELRTDDNVVRFAFNNVSSSGNNVVPTRKEKKWKRAKLSRKAKV---NE 128

Query: 150 PRQLRVKGKKKQKFSNAEERIKHKLEKARIKEALLIERLKRYEVPKVQGPVVEPHNLTAE 209
            R  R+K KKK    N E RI++KLEKA+ KE  LIE+L++Y+VPK      +P +LT E
Sbjct: 129 LRFYRLKAKKKMNSPNPEVRIRYKLEKAKRKEEWLIEKLRKYDVPKSPAEPYDPESLTEE 188

Query: 210 ERFYMKKMGQKRSNYVPIGRRG-------------------------------------- 269
           E+ Y+K+ G+KR N+V +GRRG                                      
Sbjct: 189 EQHYLKRTGEKRKNFVLVGRRGVFGGVVLNLHLHWKKHETVKVICKPCNKPGQVHEYAEE 248

Query: 270 ------------------------------------------ALEKSKYEQSLECVRRFI 272
                                                     ALEK +YEQSLE    FI
Sbjct: 249 LARLSKGIVIDVKPNNTIVLYRGKNYVRPEVMSPVDTLSKDKALEKYRYEQSLEHTSEFI 308

[Close]

BLAST of Cp4.1LG03g08310 vs. TAIR 10
Match: AT3G27550.1 (RNA-binding CRS1 / YhbY (CRM) domain protein )

HSP 1 Score: 56.2 bits (134), Expect = 6.8e-08
Identity = 40/105 (38.10%), Postives = 66/105 (62.86%), Query Frame = 0


Query: 127 TKKKLKVQRKREKQKRKAANKKDPRQLRVKGKKKQKFSNAEERIKHKLEKARIKEALLIE 186
           T +   ++ K E + RK +  K  R++R   K K+K    EER+ + L++A+ K ALL++
Sbjct: 14  TSRGRSMRSKVESRMRKESG-KTLREIRRAKKLKKKLMTDEERLIYNLKRAKKKVALLLQ 73

Query: 187 RLKRYEVPKVQGPVVEPHNLTAEERFYMKKMGQKRSNYVPIGRRG 232
           +LK+Y++P++  PV +P   T+E+    KK+G K  NYVP+G RG
Sbjct: 74  KLKKYDLPELPSPVHDPELFTSEQVQAFKKIGFKNKNYVPVGVRG 117

[Close]

BLAST of Cp4.1LG03g08310 vs. TAIR 10
Match: AT3G25440.1 (RNA-binding CRS1 / YhbY (CRM) domain protein )

HSP 1 Score: 56.2 bits (134), Expect = 6.8e-08
Identity = 43/96 (44.79%), Postives = 57/96 (59.38%), Query Frame = 0


Query: 136 KREKQKRKAANKKDPRQLRVKGKKKQKFSNAEERIKHKLEKARIKEALLIERLKRYEVPK 195
           KR+K K K A  +  +  R K KK+ +   +EE+I +KL KAR KE  L+E +K+ E  +
Sbjct: 107 KRKKLKGKRAVVRWLKFFRWKKKKEFERMTSEEKILNKLRKARKKEERLMETMKKLEPSE 166

Query: 196 VQGPVVEPHNLTAEERFYMKKMGQKRSNYVPIGRRG 232
                 +P  LT EE FY  KMG K  NYVP+GRRG
Sbjct: 167 SAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRG 202

[Close]

BLAST of Cp4.1LG03g08310 vs. TAIR 10
Match: AT3G25440.2 (RNA-binding CRS1 / YhbY (CRM) domain protein )

HSP 1 Score: 56.2 bits (134), Expect = 6.8e-08
Identity = 43/96 (44.79%), Postives = 57/96 (59.38%), Query Frame = 0


Query: 136 KREKQKRKAANKKDPRQLRVKGKKKQKFSNAEERIKHKLEKARIKEALLIERLKRYEVPK 195
           KR+K K K A  +  +  R K KK+ +   +EE+I +KL KAR KE  L+E +K+ E  +
Sbjct: 43  KRKKLKGKRAVVRWLKFFRWKKKKEFERMTSEEKILNKLRKARKKEERLMETMKKLEPSE 102

Query: 196 VQGPVVEPHNLTAEERFYMKKMGQKRSNYVPIGRRG 232
                 +P  LT EE FY  KMG K  NYVP+GRRG
Sbjct: 103 SAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRG 138

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g08310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LT57	9.5e-07	38.10	CRM-domain containing factor CFM9, mitochondrial OS=Arabidopsis thaliana OX=3702...	[more]
Q67XL4	9.5e-07	44.79	Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabid...	[more]

BLAST of Cp4.1LG03g08310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023526219.1	3.40e-229	81.84	CRM-domain containing factor CFM2, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
KAG7017679.1	1.97e-221	79.54	putative CRM domain-containing protein, chloroplastic, partial [Cucurbita argyro...	[more]
XP_022935659.1	2.80e-221	79.77	uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Cucurbit...	[more]
KAG6580934.1	1.61e-212	79.01	putative CRM domain-containing protein, chloroplastic, partial [Cucurbita argyro...	[more]
XP_038903000.1	4.93e-183	69.53	CRM-domain containing factor CFM9, mitochondrial [Benincasa hispida] >XP_0389030...	[more]

BLAST of Cp4.1LG03g08310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F621	1.35e-221	79.77	uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Cucurb...	[more]
A0A5A7UFD6	8.47e-182	67.98	CRM-domain containing factor CFM3 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3B7C2	8.47e-182	67.98	CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Cucumis melo O...	[more]
A0A6J1J3F1	1.54e-176	75.93	uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Cucurb...	[more]
A0A0A0LF61	3.97e-160	62.88	CRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G823620 PE=4 SV...	[more]

BLAST of Cp4.1LG03g08310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G28480.1	1.2e-65	45.85	RNA-binding CRS1 / YhbY (CRM) domain protein	[more]
AT4G13070.1	4.1e-13	28.63	RNA-binding CRS1 / YhbY (CRM) domain protein	[more]
AT3G27550.1	6.8e-08	38.10	RNA-binding CRS1 / YhbY (CRM) domain protein	[more]
AT3G25440.1	6.8e-08	44.79	RNA-binding CRS1 / YhbY (CRM) domain protein	[more]
AT3G25440.2	6.8e-08	44.79	RNA-binding CRS1 / YhbY (CRM) domain protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 128..148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..159
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..164
None	No IPR available	PANTHER	PTHR31426:SF2	GROUP II INTRON SPLICING FACTOR CRS1-LIKE	coord: 232..348
None	No IPR available	PANTHER	PTHR31426:SF2	GROUP II INTRON SPLICING FACTOR CRS1-LIKE	coord: 39..231
IPR040286	CRM domain-containing protein At3g25440-like	PANTHER	PTHR31426	GROUP II INTRON SPLICING FACTOR CRS1-LIKE	coord: 232..348
IPR040286	CRM domain-containing protein At3g25440-like	PANTHER	PTHR31426	GROUP II INTRON SPLICING FACTOR CRS1-LIKE	coord: 39..231

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g08310.1	Cp4.1LG03g08310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding